BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18240.1

Length=3395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936006 jgi|Araly1|936006|scaffold_500197.1                        320    4e-86
  Ahg359025 jgi|Araly1|359025|fgenesh1_pg.C_scaffold_9000065           198    2e-49


> Ahg936006 jgi|Araly1|936006|scaffold_500197.1
Length=247

 Score =  320 bits (173),  Expect = 4e-86
 Identities = 190/198 (96%), Gaps = 2/198 (1%)
 Strand=Plus/Plus

Query  1511  ACCGGTTG-ATGATATGCCTTGGGATTATTGGAGTCGGTTACTTTTAACTGTTGATGGAT  1569
             ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  8     ACCGG-TGAATGATATGCCTTGGGATTATTGGAGTCGGTTACTTTTAACTGTTGATGGAT  66

Query  1570  GGCTGCTTGAAAAGAAAATAGCAAGCAACGATGCTGACTTACTGAGAGACATGGTATGGA  1629
             ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  67    GGCTGCTTGAAAAGAAAATTGCAAGCAACGAAGCTGACTTACTGAGAGACATGGTATGGA  126

Query  1630  AGAAAGATCGAAGAATTCATGATACCTATATTGACGTCAAAGATAAGAATGAACGTGATG  1689
             |||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct  127   AGAAAGATAGAAGAATTCATGATACGTATCTCGACGTCAAAGATAAGAATGAACGTGATG  186

Query  1690  CCATCTCTGCATTTCTCA  1707
             ||||||||||||||||||
Sbjct  187   CCATCTCTGCATTTCTCA  204


> Ahg359025 jgi|Araly1|359025|fgenesh1_pg.C_scaffold_9000065
Length=1179

 Score =  198 bits (107),  Expect = 2e-49
 Identities = 122/129 (95%), Gaps = 1/129 (1%)
 Strand=Plus/Plus

Query  114  ATGACGACGAAGCTATCGAGCTTCTGTTTCTTAACCCATGGATTAGCAGGAATCTCCTGC  173
            ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct  1    ATGACGAGGAAGCTATCGAGCTTCTGTTTCTTGACCCATGGATTAGCGGGAATCTCTTGC  60

Query  174  GAGAGAGAACATGGAAGTTCTCGTCGAT-TTTTCTATCTCCCTTCTCGTCGATTAGTTTC  232
            |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct  61   GAGAGAGAACATGGAAGTTCTCGTCGGTATTTTCTATCTCCCTTCTCGTCGATTAGCTTC  120

Query  233  TACTTCGTG  241
            |||||||||
Sbjct  121  TACTTCGTG  129



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 128177905864


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5