BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18260.1
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493040 jgi|Araly1|493040|fgenesh2_kg.7__2473__AT4G18260.1 1456 0.0
> Ahg493040 jgi|Araly1|493040|fgenesh2_kg.7__2473__AT4G18260.1
Length=1805
Score = 1456 bits (788), Expect = 0.0
Identities = 911/968 (94%), Gaps = 17/968 (2%)
Strand=Plus/Plus
Query 41 TTCATAGAACTGATGAACTGATT---TagagagagagagaTA-T-ATAGGGAAATTTAGA 95
||||||||| ||||||||||||| ||||||||||||| | | | |||||| ||||||
Sbjct 1 TTCATAGAAGTGATGAACTGATTAAAAAGAGAGAGAGAGAGACTAAAAGGGAATTTTAGA 60
Query 96 GAGTGG-TTTGTGTGCTTTGAGATTCTTtgtgtgtgtgtgtgtgATTAATTA-CTATTGA 153
|||||| ||| |||||||||||||||||| | |||||||||| | ||||||| |||||||
Sbjct 61 GAGTGGATTT-TGTGCTTTGAGATTCTTT-T-TGTGTGTGTG-G-TTAATTAGCTATTGA 115
Query 154 GATTGAGATCAGAATGAAAATCTCCAAATCTCTCTGGAGTGTTATGATTTCTATTCTCTT 213
||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||||||
Sbjct 116 GATTGAGATCAGAATGAGAATCTCTAAATCTCTCAGGACTGTTTTGATTTCTATTCTCTT 175
Query 214 CTATCTTACTTCTGCTCCACCATTTGTGATTTGCTCATCTCTTGAAGTCACCATTGATAA 273
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 176 CTATCTAACTTCTGCTCCACCATTAGTCATCTGCTCATCTCTTGAAGTCACCATTGATAA 235
Query 274 CCATTCACCAAGCAATCTCAAGACTAAAGGATCCCTAGAACAAGATAAGTTGAGTCATCA 333
||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||
Sbjct 236 CCATTCACCAAGCAATCTCAATAATAAAGGATCCCAAGAACAAGACAAGTTGAGTCATCA 295
Query 334 AATGATAAATAGCATAAAGCTTCATGGCATTCTCTTATGGGTTTCCATGGGCTTTCTTAT 393
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 AATGATAAATAGCATAAAGCTTCATGGCATTCTCTTATGGGTTTCTATGGGCTTTCTTAT 355
Query 394 GCCAGTGGGGATTCTCTTCATTAGAATGGCCAATAAAGCTCATGAAAATGGAATAAAAGT 453
|||| |||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 356 GCCATTGGGGATTATCTTCATTCGAATGACCAATAAAGCTCATGCAAATGGAATAAAAGT 415
Query 454 TAAAGTGTTCTTCTACCTTCATGTCATTTTCCAGATACTGGCAGTAGTTTTAGCAACAAT 513
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 416 TAAAGTGTTCTTCTATCTTCATGTCATTTTCCAGATATTGGCAGTGGTTTTAGCAACAAT 475
Query 514 AGGAGCTATACTGTCTTTAAGAACATTGGAGAACTCTTTTGACAACAACCATCAAAGACT 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGGAGCTATACTGTCTTTAAGAACATTGGAGAACTCTTTTGACAACAACCATCAAAGACT 535
Query 574 TGGTTTGGCTCTTTATGCTGCCATGTGGCTCCAATTCTTGACCGGTGTCTTCAAGCCCTC 633
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 536 TGGCTTGGCTCTTTATGCTGCCATGTGGCTCCAATTCTTGACCGGTATCTTCAAGCCCTC 595
Query 634 AAGAGGGAGCAAAAGGAGGTTAAGATGGTTCTTATTGCATTGGATACTTGGAACAATAGT 693
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 596 AAGAGGGAGCAAAAGGAGGTTGAGATGGTTCTTATTGCATTGGATTCTTGGAACAATAGT 655
Query 694 GTCAATAGTTGGCATAGTAAACATATACACAGGCATACA-AGCTTATCAAAAGAAGACAT 752
||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 656 CTCAATAGTTGGCATAATAAACATATACACAGGCATA-AGAGCTTATCAAAAGAAGACAA 714
Query 753 CATTAAGTAGAGACTCAAGTCTTTGGACAATCTTGTTCACAGTTCAAGTCACTTGTCTTG 812
||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 715 CATCAAGTAGATACTCAAGTCTTTGGACAATCTTGTTCACAGCTCAAGTCACTTGTCTTG 774
Query 813 TCTTCTTCTATCTATATCAAGACAAATGGGAACATTTTCAAAAGCAAAGAGTTGTTCTTG 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCTTCTTCTATCTATATCAAGACAAATGGGAACATTTTCAAAAGCAAAGAGTTGTTCTTG 834
Query 873 ACGAATTGGATCATCAAAATAATAACACAAATGGAAG--A-AATAACCAAAGCATCCAAG 929
| |||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 835 ATGAATCGGATCAGCAAAATAATAACACAAATGGAAGTAATAATAACCAAAGCATCCAAG 894
Query 930 TGGTAACGAGAAATGATCATGAACAAAAGGTCATGGTTCCTCAGCCTTGTCGCAAAAGTA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGGTAACGAGAAATGATCATGAACAAAAGGTCATGGTTCCTCAGCCTTGTCGCAAAAGTA 954
Query 990 ATGCACTT 997
||||||||
Sbjct 955 ATGCACTT 962
Score = 1186 bits (642), Expect = 0.0
Identities = 733/778 (94%), Gaps = 2/778 (0%)
Strand=Plus/Plus
Query 1003 TagagaacgagagagagaggagaacaaaatggtaggcgaagaggagacgaagaagagagT 1062
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1012 TAGAGAAC--GAGAGAGAGGAGAAGAAGATGGTAGGCGAAGAGGAGACGAAGAAGAGAGT 1069
Query 1063 AGTCACTGAATCGCTAGGATGGTTAACGGAATCTTCGATTATGCCAAAGAAGCATCGCGC 1122
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TGTCACTGAATCGCTGGGATGGTTAACGGAATCTTCGATTATGCCAAAGAAGCATCGCGC 1129
Query 1123 CATCGAAGGTGTTGGTCCTTCCTCAATCATGGAGCTTAAAGCTCAGCTCTATAAGTCTCA 1182
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1130 CATCGAAGGTGTTGGTCCTTCTTCAATCATGGAGCTTAAAGCTCAGCTCTATAAATCGCA 1189
Query 1183 GGAGGAAGCTAAACAGACAAAGGATTTTACGGGATCCGATGCTCAATACCATCGCGCCAA 1242
|| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 1190 AGAAGAAGCTAAACAGACGAAGGATTTCACGGGATCCGATGTTCAATACCATCGCGCTAA 1249
Query 1243 AGAAAGGATTGCCGCCAAAGATTCTTTCGCCGCGAAAAACTCCGGCGTCGAAAGTCGCAA 1302
|||||||||||||| |||||||||||| | |||||||| |||||||| || ||||||||
Sbjct 1250 GGAAAGGATTGCCGCTAAAGATTCTTTCTCTGCGAAAAATTCCGGCGTTGAGAGTCGCAA 1309
Query 1303 TTTAAAGGACAAGCTTGAGCACAAAGCTGTAAAAGATGGAGCAGTTAGTTATGCCGCATT 1362
| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1310 TCTAAAGGACAAGCTCGAGCTCAAAGCTGTAAAAGATGGAGCAGTTAGTTATGCTGCATT 1369
Query 1363 GGAGAAAAAGGCTCAGTTGTATGATAAACTTGCTAGAGGAGAGCTTTCTGATGAAGAAGG 1422
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1370 GGAGAAAAAGGCTCAGTTGTATGATAAACTTGTTAGAGGAGAGCTTTCAGATGAAGAAGG 1429
Query 1423 TGAAGAGAAGTACTGTGTTGACTTCTTTAGGAAAGGAATTCAACATGAAGATCCAAAACC 1482
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 1430 TGAAGAGAAGTACTGTGTTGACTTCTCCAGGAAAGGAATTCAACATGAAGACCCAAAATC 1489
Query 1483 ATCAAGCACTTACAACAGTTCCATTTCAGCACCACCTGAAGATTTCAAGCAAGATGGTGA 1542
|||||| ||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1490 ATCAAGAACTTACAGCAGTTCCATTTCAGCACCACCTGAAGATTTAAAACAAGATGGTGA 1549
Query 1543 AGATGATGGTTCGCTTTTTAGCACCAAATTTGCTGGACTTGGACATGCAATTGGGACAGC 1602
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1550 AGATGATGGTTTGCTGTTTAGCACCAAATTTGCTGGACTTGGACACGCAATTGGGACAGC 1609
Query 1603 TGATGTAGGTCAACACGTGCGCATGGTCAGGGAGGTTCATGAGGAAGTCAATCAAGCGAG 1662
||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1610 TGATGTAAGTCAACATGTGCGTATGGTCAGGGAGGTTCATGAGGAAGTGAATCAAGCTAG 1669
Query 1663 AGAAAAGGCAACCGAGTTAAAGCAAAGGAGACAAGAGCAAGCAACAAATCGTCGGGAGAA 1722
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 AGAAAAGGCAACTGAGTTAAAGCAAAGGAGACAAGAGCAAGCAACAAATCGTCGGGAGAA 1729
Query 1723 ACTCAAACAAGCTTATCTTCGGAAGCAGCTCGAGAAACTAAAGGCTCAACAACAACAA 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 ACTCAAACAAGCTTATCTTCGGAAGCAGCTCGAGAAACTAAAGGCTCAACAACAACAA 1787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67724455610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5