BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18270.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329709 jgi|Araly1|329709|fgenesh1_pm.C_scaffold_7001936 638 0.0
Ahg952029 jgi|Araly1|952029|scaffold_30500002.1 183 3e-45
> Ahg329709 jgi|Araly1|329709|fgenesh1_pm.C_scaffold_7001936
Length=942
Score = 638 bits (345), Expect = 0.0
Identities = 376/391 (96%), Gaps = 2/391 (1%)
Strand=Plus/Plus
Query 1054 CTCTCTGTATTTGGAGCTTCGATGGCTGGAGCTTGTTTTGGGTTTCTGCTTCACAATCGA 1113
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 553 CTCTCTGTATTTGGAGCTTCAATGGCTGGAGCTTGTTTTGGGTTTCTGCTTCACAATCGA 612
Query 1114 TACAGAGCATCAGTTTCCATGGGAGATACAGGATCCTTGGCTCTAGGTGGAGCTTTGGCT 1173
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 613 TACAGAGCATCAATTTCCATGGGAGATACTGGATCCTTGGCTCTAGGTGGAGCTTTGGCT 672
Query 1174 GCAATGGCTGCTTGCTCAGGAATGTTCTTCCCGTTGTTCATATCGTCTGGTGTCGCAGTT 1233
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 673 GCAATGGCTGCTTGCTCAGGAATGTTCTTCCCATTGTTCATATCGTCTGGTGTCGCAGTT 732
Query 1234 TTGGAAGCTTCTTCTGTCATTATACAGGTCGTGTATTACTCGACAACTAAGCGTTTAAAA 1293
||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 733 TTGGAAGCTTCTTCTGTCATTATTCAGGTCGTGTATTACTCGGCGACTAAGCGTTTAAAA 792
Query 1294 GGAAAAGGGCGTCGGATATTCAAGACTA-TACCGTTTCATCATCACCTTAGGCTAAACGG 1352
||||||||||||||||||||||| || | |||| |||||||||||||||||||| | ||
Sbjct 793 GGAAAAGGGCGTCGGATATTCAAAAC-AGTACCATTTCATCATCACCTTAGGCTGAGTGG 851
Query 1353 TTTAAAGGAGCCAATGATAGTAACGATGGCATATGTAATATCCTCTTTGCTCTCTCTTTC 1412
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 852 TTTAAAGGAGCCAATGATAGTAACAATGGCATATGTAATATCCTCTTTGCTCTCTCTTTC 911
Query 1413 AGCAGCTTACATAGGTCTTATTTCTGCATAA 1443
|||||||||||||||||||||||||||||||
Sbjct 912 AGCAGCTTACATAGGTCTTATTTCTGCATAA 942
Score = 375 bits (203), Expect = 4e-103
Identities = 288/328 (88%), Gaps = 10/328 (3%)
Strand=Plus/Plus
Query 9 TTCCTTGTTAACTCCGACTTCTTACCGATTTCATTACCCAAACCCGTTTCGATCTCTTGA 68
||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 9 TTCCTTGTTAACTCCGAGTTCTTACCGATTCCATTACCCAAATCCGTTTCGATCTCTAGA 68
Query 69 ATCGATTCCTCCCCTTTCAAATT-CACGTTATCGCATCGAATCTGGATCTCCCTCTTCTT 127
|||||||||||| || || || ||| | |||| |||||||||||||| |||||||
Sbjct 69 ATCGATTCCTCCACTCTC-GGTTACACCTCCTCGCGTCGAATCTGGATCTGTTTCTTCTT 127
Query 128 TC-A-AGTTCAGTGCGCCG-AGCTTGC-AGAGACATAGCTCTGTCTCGGTTAAAGCATTT 183
|| | || | | || | | || | || |||||||||||||||||| ||||| ||||||
Sbjct 128 TCAAGAGAT-A-TG-GATGTAG-TAGCGTGAGACATAGCTCTGTCTCTGTTAAGGCATTT 183
Query 184 GATGATGATACATTTGATTTCTATACCGGTGACATATTTGCTGCTACTTATGCTATTTCG 243
|||||||||||||||||||||||| |||||||||| || ||||||| ||||| ||||||
Sbjct 184 GATGATGATACATTTGATTTCTATTCCGGTGACATCTTCACTGCTACATATGCAATTTCG 243
Query 244 TCGAGTGAAGGCGAAGAGAGCGATGGGGATTATGCTTTGAATGTGGTTACCGAAACTACT 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 TCGAGTGAAGGCGAAGAGAGCGATGGTGATTATGCTTTGAATGTGGTTACCGAAACTACT 303
Query 304 GCACAGAAGCTAGGAAAGTTTCCAAGAG 331
||||||||||||||||||||||| ||||
Sbjct 304 GCACAGAAGCTAGGAAAGTTTCCTAGAG 331
Score = 353 bits (191), Expect = 2e-96
Identities = 211/221 (95%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 525 AGACAGACTGAGAGTGCATGAGCCAATTAGGACATTAGGGCCAGTTCCACATAACCGCAG 584
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 330 AGACAGACTGAAAGTGCATGAGCCAATTAGGACACTAGGGCCAGTTCCACATAACCGCAG 389
Query 585 ACCAACAATCCCGACAATGGGTGGGTTGTTTTTTGTTCCAATTGGTGTTGTTGTTGCAAT 644
|||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 390 ACCAACAATCCCGACAATGGGTGGCTTGTTCTTTGTTCCAGTTGGTGTTGTTGTTGCAAT 449
Query 645 AGCCTTGAATAAAGTTTCATCCATCGAAGTCTTGGGAGCAGCAGCCGCAACTGTAGCATT 704
|||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 450 AGCCTTGACTAAAGTTTCGTCCATCGAAGTCTTGGGAGCAGCAGCTGCAACTGTAGCATT 509
Query 705 TGCAGCCATTGGGCTAATTGATGACTCCTTAAGCCTCTACA 745
|||||| ||||||||| ||||||||||||||||||||||||
Sbjct 510 TGCAGCTATTGGGCTAGTTGATGACTCCTTAAGCCTCTACA 550
> Ahg952029 jgi|Araly1|952029|scaffold_30500002.1
Length=295
Score = 183 bits (99), Expect = 3e-45
Identities = 121/131 (92%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 926 CATCGTTTTACTTTGTTTCCATGGGAAACTTAGTCAAAGCAACCGATGGTCTCGATGGAT 985
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CATCGTGTTACTTTGTTTCCATGGGAAACTTAGTCAAAGCAACCGATGGTTTCGATGGAT 60
Query 986 TGGCGGGAGGTATTGCTGCTTTGTGTTTT-GTTGCAATGGCAATAGCAGTTCTTCCTATT 1044
||||||||||||||||||| ||| | ||| |||||||||| | | |||||||||||||||
Sbjct 61 TGGCGGGAGGTATTGCTGCATTG-GCTTTCGTTGCAATGGTAGTTGCAGTTCTTCCTATT 119
Query 1045 TGCTCTG-ATC 1054
||||||| |||
Sbjct 120 TGCTCTGCATC 130
Score = 165 bits (89), Expect = 9e-40
Identities = 103/110 (94%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1120 GCATCAGTTTCCATGGGAGATACAGGATCCTTGGCTCTAGGTGGAGCTTTGGCTGCAATG 1179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 126 GCATCAGTTTCCATGGGAGATACTGGATCCTTGGCTCTAGGTGGAGCTTTGGCTGTAATA 185
Query 1180 GCTGCTTGCTCAGGAATGTTCTTCCCGTTGTTCATATCGTCTGGTGTCGC 1229
|||||||||| ||||||||||||||| ||| |||||||| ||||||||||
Sbjct 186 GCTGCTTGCTTAGGAATGTTCTTCCCATTGCTCATATCGACTGGTGTCGC 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5