BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18282.1

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493037 jgi|Araly1|493037|fgenesh2_kg.7__2470__AT4G18282.1         206    5e-53


> Ahg493037 jgi|Araly1|493037|fgenesh2_kg.7__2470__AT4G18282.1
Length=165

 Score =  206 bits (111),  Expect = 5e-53
 Identities = 134/145 (92%), Gaps = 2/145 (1%)
 Strand=Plus/Plus

Query  2    TGCAACTGCAACTTCACCATCTTGAGATTCAATTGGCTGAGCTATATTGGGTCCCCATTG  61
            ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  8    TGCAACTTC-ACTTCACCATCTTGAGATTCAATTGGCTGAGCTATATTGGGTCCACATTG  66

Query  62   GTCCTCGGCCTGTTAATGGAACATTTGCTCTCTCTCCCCCCTCGATTTATATGCGTGACG  121
            ||||||| ||| ||||||||||||||||||||| ||| |||||||||| |||||| || |
Sbjct  67   GTCCTCGACCTATTAATGGAACATTTGCTCTCTTTCCACCCTCGATTTGTATGCG-GATG  125

Query  122  CGGTCTATATCAAGTACAAATTCTT  146
            |||||||||| ||||||||||||||
Sbjct  126  CGGTCTATATGAAGTACAAATTCTT  150



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5422733062


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5