BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18290.1
Length=2216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329707 jgi|Araly1|329707|fgenesh1_pm.C_scaffold_7001934 3262 0.0
Ahg494350 jgi|Araly1|494350|fgenesh2_kg.8__166__AT5G46240.1 1513 0.0
> Ahg329707 jgi|Araly1|329707|fgenesh1_pm.C_scaffold_7001934
Length=2106
Score = 3262 bits (1766), Expect = 0.0
Identities = 1984/2090 (95%), Gaps = 12/2090 (1%)
Strand=Plus/Plus
Query 1 ATGTCAATCTCTTGTACCAGAAACTTCTTCAAACGATTCTGCGTCGAAGAATACAATATG 60
||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCAATCTCTAGTACTAGAAACTTCTTCAAACGATTCTGCGTCGAAGAATACAATATG 60
Query 61 GATACATTCAAACATAGCAGTTTCCTCTCTGCTGATCTCTTACCATCTCTTGGAGCTAGA 120
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATACATTCAAACACAGTAGTTTCCTCTCTGCTGATCTCTTACCATCTCTTGGAGCTAGA 120
Query 121 ATAAACCAATCAACTAAGCTCCGTAAACACATCATCTCTCCTTTCGATCCACGTTTCAGG 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAAACCAATCAACTAAGCTCCGCAAACACATCATCTCTCCTTTCGATCCACGTTTCAGG 180
Query 181 GGATGGGAGATGTGGCTGGTCATTCTTGTGATTTACTCAGCTTGGATTTGTCCATTTGAG 240
| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 181 GCATGGGAGATGTGGCTGGTCATTCTTGTGATTTACTCGGCTTGGATTTGTCCTTTTGAG 240
Query 241 TTTGCCTTCATCACCTACAAGAAAGACGCACTTTTCATCATTGACAACATTGTCAATGGA 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TTTGCCTTCATCACCTACAAGAAAGACGCGCTTTTCATCATTGACAACATTGTCAATGGC 300
Query 301 TTCTTTGCCATTGACATCATTCTCACCTTCTTCGTTGCTTATCTAGACAGCCACTCATAT 360
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 301 TTCTTTGCCATTGATATCATTCTCACCTTCTTCGTTGCTTATCTTGACAGCCACTCTTAT 360
Query 361 CTTCTAGTCGACAAACCTAAGAAAATAGCTATAAGGTACCTTTCTACTTGGTTCGCCTTT 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTCTAGTCGATAAACCTAAGAAAATAGCTATAAGGTACCTTTCTACTTGGTTCGCCTTT 420
Query 421 GATGTCTGCTCAACAGCTCCATTCCAGTCACTGAGTCTTCTGTTCAAATACAATGGAAGT 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 421 GATGTCTGCTCAACAGCTCCATTCCAGTCACTGAGTCTTCTGTTCAATTACAACGGAAGC 480
Query 481 GAAATAGGATTCAGAGTTCTTAGTATGCTCAGGCTCTGGCGTCTTAGACGAGTTAGCTCG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAATAGGATTCAGAGTTCTTAGTATGCTCAGGCTCTGGCGTCTTAGACGAGTTAGCTCC 540
Query 541 CTGTTTGCAAGGCTTGAGAAAGATATCCGCTTCAACTATTTCTGGACACGATGCACAAAA 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 CTGTTTGCAAGGCTTGAGAAAGATATCCGCTTCAACTATTTCTGGACACGCTGCACAAAA 600
Query 601 CTCATTTCGGTGACACTGTTTGCAGTACATTGTGCTGGATGCTTCGCCTACCTCATTGCA 660
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 CTCATTTCGGTCACACTGTTTGCAGTACATTGTGCTGGATGCTTCAACTACCTCATTGCA 660
Query 661 GATCAATATCATGATCCAACAAAAACATGGATTGGAGCTGTCTACCCAAATTTCAAGGAG 720
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATCGATATCCTGATCCAACAAAAACATGGATTGGAGCTGTCTACCCAAATTTCAAGGAG 720
Query 721 ACAAGCGTATGGAGTAGATATGTTACTGCTCTTTACTGGTCTATTACGACATTAACAACA 780
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 ACAAGCGTATGGAGTAGATATGTTACTGCTCTTTACTGGTCAATTACGACATTAACAACT 780
Query 781 ACAGGTTATGGAGACTTACATGCTGAGAACCCAAGAGAAATGTTGTTCTTTGTGTTTTTC 840
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 781 ACAGGTTATGGAGACTTACATGCCGAGAATCCAAGAGAAATGTTGTTCTTTGTGTTTTTC 840
Query 841 ATGCTCTTCAACCTCGGTTTCACATCTTACCTCATAGGAAATATGACCAACCTTGTGGTT 900
|||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 841 ATGCTCTTCAACCTGGGTTTTACATCTTACCTGATTGGAAATATGACCAACCTTGTGGTT 900
Query 901 CACTGGACTAGCCGCACCAGAAACTTTAGAGATACTGTAAGAGCTGCTTCAGAGTTTGCA 960
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 901 CACTGGACTAGCCGCACCAGAAACTTTAGAGATACTGTAAGAGTTGCTTCGGAGTTTGCA 960
Query 961 TCAAGAAACCAACTCCCACCAAACATACAAGACCAAATGTTATCACACATTTGCTTAAAG 1020
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCAAGAAACCAACTTCCACCAAACATACAAGACCAAATGTTATCACACATTTGCTTAAAG 1020
Query 1021 TTTAAAACAGAGGGTCTGAAACAACAAGAAGCTTTAAATGGTTTGCCGAAAGCAATCCGG 1080
|| ||||||||||||||||||||||||||| | || || ||||||||||||||||| |||
Sbjct 1021 TTCAAAACAGAGGGTCTGAAACAACAAGAAACCTTGAACGGTTTGCCGAAAGCAATTCGG 1080
Query 1081 TCAAGCATTGCAAACTATCTCTTCTTCCCAATCGTTCAGAACGTCTACCTATTTCACGGA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1081 TCAAGCATTGCAAACTATCTCTTCTTCCCAATCGTTCAGAACGTCTACCTCTTTCAGGGA 1140
Query 1141 GTTTCTCGCAACTTCCTATTTCAGTTGGTTTCAGATATAGACGCCGAATATTTCCCACCA 1200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GTTTCTCACAACTTCCTATTTCAGTTGGTTTCAGATATAGACGCCGAATATTTCCCACCA 1200
Query 1201 AGAGAAGATGTAATACTACAGAACGAAGCTCCTACTGACCTCTACATCCTAGTCTCAGGG 1260
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1201 AGAGAAGATGTAATACTACAGAACGAAGCTCCTACTGACCTTTACGTTCTAGTCTCAGGG 1260
Query 1261 GCAGTGGATTTTACTGTCTACGTTGGCGAAGAAGATCAGGTTCAAGGCAAGGCGGTTGTT 1320
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCAGTGGATTTTACTGTCTATGTTGGCGAAGAAGATCAGGTTCAAGGCAAGGCGGTTGTT 1320
Query 1321 GGCGATGCATTTGGAGAGATTGGTGTGTTATGCTATACACCACAACCTTTCACAGTTAGG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGCGATGCATTTGGAGAGATTGGTGTGTTATGCTATACACCACAACCTTTCACAGTTAGG 1380
Query 1381 ACAACAGAACTATCTCAGATACTACGGATAAGCAAAAAATCTCTAATGAGTGCTATGCGA 1440
||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1381 ACAACTGAACTTTCTCAGATACTACGCATAAGCAAGAAATCTCTAATGAGTGCTATGCGA 1440
Query 1441 GCTCATGTCGAAGATGGACGAGTCATAATGAACAACCTCTTCATGAAACTTAGAGGGCAA 1500
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GCTCATATCGAAGATGGACGTGTCATAATGAACAACCTCTTCATGAAACTTAGAGGGCAA 1500
Query 1501 CAATCAATAGCAATTGATGATCCAAATTCAGAACCAGAGTCACTTCTCAAGGAGTGGCTT 1560
|| |||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||
Sbjct 1501 CAGTCAATAGCAATTGATGATCCAAATACAGAAGCAGACTCACTTCTCCAGGAGTGGCTT 1560
Query 1561 GTTGGTGGTTCAAAGACAGGAGAAGGAAACGCTAGTGATCAAGGACATGGG-CACAAATA 1619
| ||||| | ||||||||| |||||||||| | |||||||||||||| ||| ||||||||
Sbjct 1561 GGTGGTGATCCAAAGACAGAAGAAGGAAACACAAGTGATCAAGGACA-GGGACACAAATA 1619
Query 1620 TTTACAACTGCATGATTCAGAAAATATTGATATGGGGTCAACTGAATGGAGAGATTCAAG 1679
|||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1620 TTTACAACTGCATGATACAAAAAATATTGATATGGGGTCAACTGAATGGAGGGATTCAAG 1679
Query 1680 AAGATCTGGTTATGGCGAAACGAAAAGAGTTCGAGAACATACGATAGAGATAGAAGAAGG 1739
| |||||||| || ||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 1680 A---TCTGGTTACGGTGAAACGAAAAGAGCTCTAGTACATAGGATAGAGATAGAAGAAGG 1736
Query 1740 AGA-AAAACCAAATAAAGAGTTTGATGGAAAAGGTTGCTCTGATGCAGATCTTACCTCAT 1798
| ||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1737 -GTTAAAACCAAAGAAAGAATTTGATGGAAAGGGTTGCTCTAATGCAGATCTTACCTCAT 1795
Query 1799 TTGAATTTCATTCACAGGAAGCATATCCATATTGCAGATCAAACATCCAAATCAAACAAC 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TTGAATTTCATTCACAGGAAGCATATCCATATTGCAGATCAAACATCCAAATCAAACAAC 1855
Query 1859 ATGAAGCTGCAAAACCAAAAGATAAAAGAGTTACCATCCACTTGAAGTCCCGGGACAAAG 1918
||||||||| ||||||||||||||| ||| | ||||||||||||||||| ||||| ||||
Sbjct 1856 ATGAAGCTGTAAAACCAAAAGATAAGAGACTCACCATCCACTTGAAGTCTCGGGAAAAAG 1915
Query 1919 ATTTGTCGAAGCTGATAATCCTTCCTGCTTCCATAGAAGAGTTGCTAAGACTTGCAGGTG 1978
||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||
Sbjct 1916 ATTTGTCGAAGCTGATAGTACTTCCTGCTTCCATAGAAGAGCTGCTAAAACTTGCAGGTG 1975
Query 1979 AAAAATTTGGATACA---GCTTCACAAAGGTCACGAATGCGGAAAACGCAGAAATAGATG 2035
| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1976 ACAAATTTGGATACAAAAGCTTCACAAAGGTCAAGAATGCGGAAAACGCAGAAATAGATG 2035
Query 2036 ATGAAGATGTGATTAGAGATGGTGATCATTTGTATATTCT-CATCAATGA 2084
||| ||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 2036 ATGTAGATGTGATTAGAGATGGTGATCATTTGTATTTT-TGCATCAATGA 2084
> Ahg494350 jgi|Araly1|494350|fgenesh2_kg.8__166__AT5G46240.1
Length=2262
Score = 1513 bits (819), Expect = 0.0
Identities = 1308/1542 (85%), Gaps = 42/1542 (3%)
Strand=Plus/Plus
Query 1 ATGTCAATCTCTTGTACCAGAAACTTCTT-CAAACGATTCTGCGTCGAAGAATACAATAT 59
||||| |||||| ||||| |||| ||||| |||| ||||||| ||||| |||||||||||
Sbjct 170 ATGTCGATCTCTCGTACCCGAAATTTCTTCCAAA-GATTCTGTGTCGAGGAATACAATAT 228
Query 60 GGATA-CATTCAAACATAGCAGTTTCCTCTCTGCTGATC-TCTTACCATCTCTTGGAGCT 117
|| | || | ||||| || |||||||||||||| |||| || ||||||||||||||||
Sbjct 229 AGACACCA-TAAAACAGAGTAGTTTCCTCTCTGCCGATCTTC-TACCATCTCTTGGAGCC 286
Query 118 AGAATAAACCAATCAACTAAGCTCCGTAAACACATCATCTCTCCTTTCGATCCACGTT-T 176
||||| |||||||| ||||||||||||||||| || ||||||||||| ||||||||| |
Sbjct 287 AGAATTAACCAATCTACTAAGCTCCGTAAACATATAATCTCTCCTTTTAATCCACGTTAT 346
Query 177 CAGGGGATGGGAGATGTGGCTGGTCATTCTTGTGATTTACTCAGCTTGGATTTGTCCATT 236
|| | ||||||||||||||| ||| |||| || |||||||||||||||||||| |||||
Sbjct 347 -AGAGCATGGGAGATGTGGCTAGTCTTTCTAGTTATTTACTCAGCTTGGATTTGCCCATT 405
Query 237 TGAGTTTGCCTTCATCACCTACAAGAAAGACGC-ACTTTTCATCATTGACAACATTGTCA 295
| | ||||| ||||||||||| || |||||||| | |||||||||| ||||||||||| |
Sbjct 406 TCAATTTGCTTTCATCACCTATAAAAAAGACGCGA-TTTTCATCATCGACAACATTGTTA 464
Query 296 ATGGATTCTTTGCCATTGACATCATTCTCACCTTCTTCGTTGCTTATCTAGACAGCCACT 355
|||| ||||||||||| || || ||||||||||||| ||||| ||||| || |||||||
Sbjct 465 ATGGCTTCTTTGCCATAGATATTGTTCTCACCTTCTTTGTTGCGTATCTCGATAGCCACT 524
Query 356 CATATCTTCTAGTCGACAAACCTAAGAAAATAGCTATAAGGTACCTTTCTACTTGGTTCG 415
| ||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||
Sbjct 525 CCTATCTTCTAGTTGACAATCCTAAGAAAATAGCAATAAGGTACCTTTCGACATGGTTCG 584
Query 416 CCTTT-GATGTCTGCTCAACAGCTCCATTCCAGTCACTGAGTCTTC-TGTTCAAATACAA 473
|||| ||||| || || ||||| ||||| ||| ||||||| | || |||| || |||||
Sbjct 585 -CTTTCGATGTGTGTTCCACAGCACCATTTCAGCCACTGAG-CCTCTTGTTTAACTACAA 642
Query 474 TGGAAGTGAAATAGGATTCAGAGTTCTTAGTATGCTCAGGCTCTGGCGTCTTAGACGAGT 533
||||| ||| ||| ||||||| ||||||| |||||||| | |||||||| | |||||
Sbjct 643 CGGAAGCGAACTAGAATTCAGAATTCTTAGCATGCTCAGATTATGGCGTCTCCGTCGAGT 702
Query 534 TAGCTCGCTGTTTGCAAGGCTTGAGAAAGATATCCGCTTCAACTATTTCTGGACACGATG 593
||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||| ||
Sbjct 703 TAGCTCGCTGTTTGCAAGGCTTGAGAAAGATATTCGTTTCAACTACTTCTGGATACGGTG 762
Query 594 CACAAAACTCATTTCGGTGACACTGTTTGCAGTACATTGTGCTGGATGCTTCGCCTACCT 653
|||||||||||||||||| || |||| || ||||||||||||||||| ||| ||||||
Sbjct 763 CACAAAACTCATTTCGGTCACTTTGTTCGCTGTACATTGTGCTGGATGTTTCAACTACCT 822
Query 654 CATTGCAGATCA-ATATCATGATCCAACAAAAACATGGATTGGAGCTGTCTACCCAAATT 712
||||||||| | ||||| | |||||| ||| |||||||| || || || || ||| |||
Sbjct 823 GATTGCAGAT-AGATATCCTAATCCAAGAAAGACATGGATCGGTGCCGTGTATCCAGATT 881
Query 713 TC-AAGGAGACAAG-CGTATGGAGTAGATATGTTACTGCTCTTTACTGGTCTATTACGAC 770
|| ||| || |||| | | |||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 882 TCAAAGAAG-CAAGTC-TCTGGACTAGATATGTGACTGCTCTTTACTGGTCCATTACGAC 939
Query 771 ATTAACAACAACAGGTTATGGAGACTTACATGCTGAGAACCCAAGAGAAATG-TTGTTCT 829
|||||| || || || |||||||| |||||||||||||| |||||||||||| || |||
Sbjct 940 ATTAACGACCACGGGATATGGAGATTTACATGCTGAGAATCCAAGAGAAATGCTT-TTCG 998
Query 830 TTGTGTTT-TTCATGCTCTTCAACCTCGGTTTCACATCTTACCTCATAGGAAATATGACC 888
| ||| || ||||| |||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 999 ACAT-TTTCTTTATGCTATTCAACCTCGGTTTGACAGCTTACCTCATTGGAAATATGACC 1057
Query 889 AACCTTGTGGTTCACTGGACTAGCCGCACCAGAAACTTTAGAGATACTGTAAGAGCTGCT 948
||||| || ||||| ||||||||||| ||||||| |||||| ||||| || |||||||||
Sbjct 1058 AACCTCGTCGTTCAGTGGACTAGCCGAACCAGAACCTTTAGGGATACAGTGAGAGCTGCT 1117
Query 949 TCAGAGTTTGCATCAAGAAACCAACTCCCACCA-AACATACAAGACCAAATGTTATCACA 1007
||||||||||| |||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 1118 TCAGAGTTTGCTTCAAGAAATCAACTCCCA-CATGACATACAAGACCAAATGTTATCACA 1176
Query 1008 CATTTGCTTAAAGTTTAAAACAGAGGGTCT-GAAACAACAAGA-AGCTTTAA-ATGGTTT 1064
||||||||||||||| ||||||||||| || |||||||||||| | ||| || | | |
Sbjct 1177 CATTTGCTTAAAGTTCAAAACAGAGGG-CTTGAAACAACAAGAGACCTTGAACAA--TCT 1233
Query 1065 GCCGAAAGCAATCCGGTCAAGCATTGCAAACTATCTC-TTCTTCCCAATCGTTCAGAACG 1123
||| ||||||||||||||||||||||||||||| || |||||||| || ||||| |||
Sbjct 1234 GCCAAAAGCAATCCGGTCAAGCATTGCAAACTA-CTTATTCTTCCCCATTGTTCACAACA 1292
Query 1124 TCTACCTATTTCACGGAGTTTCTCGCAACTTCCTATTTCAGTTGGTTTCAGATATAGACG 1183
| ||||| ||||| ||||||||||| |||||||||||||| |||||||| || |||||||
Sbjct 1293 TTTACCTCTTTCAAGGAGTTTCTCGTAACTTCCTATTTCAATTGGTTTCCGACATAGACG 1352
Query 1184 CCGAATATTTCCCACC-AAGAGAAGATGTAATACTACAGAACGAAGCTCCTACTGACCTC 1242
|||| ||||||||||| || ||||||| |||| ||||| ||||||||||||||||| ||
Sbjct 1353 CCGAGTATTTCCCACCTAA-AGAAGATATAATTCTACAAAACGAAGCTCCTACTGATCTT 1411
Query 1243 TACATCCTAGTCTCAGGGGCAGTGGATTTTAC-TGTCTACGTTGGCGAAGAAGATCAGGT 1301
||||| || || ||||| |||||||| || || || |||||||| | | | |||||| |
Sbjct 1412 TACATTCTGGTTTCAGGAGCAGTGGACTTCACATG-CTACGTTGATGGACATGATCAGAT 1470
Query 1302 TCAAGGCAAGGCGGTTGTTGGCGATGCATTTGGAGAGATTGGTGTGTTATGCTATACACC 1361
|||||| || || ||| |||| ||| | ||||||||| |||| || |||||||||| |||
Sbjct 1471 TCAAGGGAAAGCAGTTATTGGAGATACGTTTGGAGAGGTTGGAGTTTTATGCTATAGACC 1530
Query 1362 ACAACCTTTCACAGTTAGGACAACAGAACTATCTCAGATACTACGGATAAGCAAAAAATC 1421
|||||| |||||||| || ||| | || |||||||| |||||||||||||||| || |||
Sbjct 1531 ACAACCATTCACAGTAAGAACAGCCGAGCTATCTCAAATACTACGGATAAGCAGAACATC 1590
Query 1422 TCTAATGAGTGCTATGCG-AGCTCATG-TCGAAGATGGACGAGTCATAATGAACAACCTC 1479
|| ||||| || |||| | |||||| | || ||||||||| | ||||||||||| ||
Sbjct 1591 GCTGATGAGCGCAATGCACA-CTCATGCT-GACGATGGACGAATTATAATGAACAATCTA 1648
Query 1480 TTCATGAAACTTAGAGGGCAACAATCAATAGCAATTGATGAT 1521
||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1649 TTCATGAAACTTAGAGGGCAACAGTCAATAGCAATAGATGAT 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83417636550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5