BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18300.1
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493035 jgi|Araly1|493035|fgenesh2_kg.7__2468__AT4G18300.1 3001 0.0
Ahg482461 jgi|Araly1|482461|fgenesh2_kg.4__1521__AT2G34970.1 2063 0.0
Ahg477461 jgi|Araly1|477461|fgenesh2_kg.3__162__AT3G02270.1 309 5e-83
> Ahg493035 jgi|Araly1|493035|fgenesh2_kg.7__2468__AT4G18300.1
Length=2136
Score = 3001 bits (1625), Expect = 0.0
Identities = 1972/2138 (92%), Gaps = 30/2138 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGCTCAGAAGAAACCCGCGGCGGCTAAGGTTCGTGAGGATTCAGAGGATCTAAGT 60
||||||||||||||||||||||| | ||||| |||||| || ||||| |||||||| | |
Sbjct 1 ATGGGTGCTCAGAAGAAACCCGCCGTGGCTAGGGTTCGAGATGATTCGGAGGATCTGACT 60
Query 61 CGTCAACGATTACAAGCCATTCTTCTAGCCGACAGCTTCACCACTCAATTCCGTTCCATA 120
|||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct 61 CGTCAACGGTTACAAGCCATAGTTCTAGCGGACAGCTTCACCACTCAATTCCGTCCCATA 120
Query 121 ACCCTAGAACGACCAAAGGTACTATTGCCGATAGTGAACATCCCGATGATTGATTACACT 180
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 ACCCTAGAACGCCCTAAGGTACTATTGCCGCTAGTGAACATCCCGATGATTGATTACACT 180
Query 181 TTAGCATGGCTCGAATCAGCTGGGATCGAAGAGGTTTTTGTGTTCTGTTGTGCTCATTCG 240
||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||| |||
Sbjct 181 TTAGCATGGCTCGAATCAGCTGGAATCGAAGATATTTTCGTGTTCTGTTGTGTTCACTCG 240
Query 241 TCGCAGATCATCGATTACCTGA-AGAAATCGGAATGGTACACACGCCCAAACCCAAACTT 299
|| ||| ||||||||||||| | ||||||| ||||||||| ||||| |||||||||||||
Sbjct 241 TCCCAGGTCATCGATTACCT-AGAGAAATCCGAATGGTACTCACGCTCAAACCCAAACTT 299
Query 300 GTTGGTGAGAACGATAGTGTCTCACAATTCCACCAGTGTTGGAGATGCTCTGCGTTATAT 359
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 300 GTTGGTGAGAACGATAGTGTCTCCCAAATCCACCAGTGTTGGAGATGCTCTGCGTTATAT 359
Query 360 CTATGAACAACAGACAGAGACGTCGCAGATTCAAGGTGATTTTGTTCTTGTTAGTGGTGA 419
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 360 ATATGAACAACAGACAGAGACGTCTCAGATTCAAGGTGATTTTGTTCTTGTTAGTGGGGA 419
Query 420 TACTGTTAGTAATATGCCACTTGCTGATTTGATTCAACAACATAGAGATAGGAAGAAGAA 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 TACTGTTAGTAATATGCCACTTGCTGATTTGATTCAAGAACATAGAGATAGGAAGAAGAA 479
Query 480 AGATGAGAAAGCTATCATGACTATGGTTTTTAAGAAGCAGTCTAGACTAGGAATAGGATC 539
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 480 AGATGAGAAAGCTATCATGACTATGGTTATTAAGAAGCAGTCTAGACTAGGATTAGGATC 539
Query 540 TGATCAACTCTTTGTTGCAGTAGATCCTTTAACGAAACAGCTTCTTCATTACGAGGAATG 599
|||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||| |
Sbjct 540 TGATCAACTCTTCATTGCGGTAGATCCTTTAACGAAACAGCTTGTTCGTTACGAGGAAGG 599
Query 600 TAATTCGAGAGGCGGGGACTTTTGCTTAGATAAGTCCTTGTTGGATAGTACTG-TTT--T 656
|||| ||||| ||||||| |||||||||||||||| |||||||||||||||| ||| |
Sbjct 600 TAATGCGAGAATCGGGGACGTTTGCTTAGATAAGTCATTGTTGGATAGTACTGTTTTACT 659
Query 657 ATGCAGTGATATGCAGGATTGTTACATTGACATTTGTTCTCCTGAGGTGCTTAGTCTCTT 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGCAATGATATGCAGGATTGTTACATTGACATTTGTTCTCCTGAGGTGCTTAGTCTCTT 719
Query 717 TGAGGATAACTTTGATTATCAGCATATGCGCCGTCATTTTGTTAATGGTTTGCTTGTTGA 776
||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 720 TGAGGATAACTTTGATTATCAACATCTGCGCCGTCATTTTGTCAATGGTTTGCTTGTTGA 779
Query 777 TGATATTATGGGTTACAAGATTTTCACTCATGAGATTCAGTCGAGTTGTTATGCTGCAAG 836
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 780 TGATATTATGGGTTACAAGATTTTTACTCATGAGATTCAGTCGAGTTTTTATGCTACAAG 839
Query 837 GATCGACAATTTACGGAGCTATGACACT-GTTAGCAAGGATATAATCCAGAGGTGGACAT 895
||| || ||||||||||||||||| | | ||||||||| |||||||||||||||||||||
Sbjct 840 GATTGAAAATTTACGGAGCTATGATA-TGGTTAGCAAGAATATAATCCAGAGGTGGACAT 898
Query 896 ACCCGTACGTACCTAATATCGATTTCAGCGG-GAATCGCCCTGTAAAGCTCGGGAGACGG 954
|||||| ||||||| ||||| |||||||||| ||| || || ||| ||||||||||| |
Sbjct 899 ACCCGTTCGTACCTGATATCAATTTCAGCGGAAAAT-GCTCTCTAATGCTCGGGAGACAG 957
Query 955 GGGATATACCGGGCTTCTGATGCAGTTCAATCACACACTGCAGATGTTGGAGCTTCCACT 1014
|||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||
Sbjct 958 GGGATATACCGGGCTTCTGATGCAGTTCAATCACGCTCTGCTGATATTGGAGCTTCCACT 1017
Query 1015 GTCATTGGATATGGCACCAAAATTGGTAATGGAGGTAAAATCTATAACTCTGTTATTGGG 1074
||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1018 GTCATTGGATACGGCACCAGAATTGGTAATGGAGGTAAAATCTTTAACTCTGTTATTGGG 1077
Query 1075 AACGGATGTTGTATTGGATCAAATGTGGTGATACAAGGCTCATACATATGGAACAATGTT 1134
|| ||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 1078 AATGGATGTTCTATTGGATCAAATGTCGTGATAGAAGGCTCGTACATATGGAACAATGTT 1137
Query 1135 ACGATTGAAGATGGGTGTGAGATAAGGAACGCTATTGTCTGTGATGGTGTGAAAGTCAGA 1194
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 1138 ACGATTGAAGATGGGTGTGAGATAAGGAATGCTATTGTCTGTGATGGAGTGAAAATCAGA 1197
Query 1195 GCAGGAGCTGTTCTGCAGCCTGGTGTTGTTTTGTCTTTCAGTGTTGTAGTTGGGCGGGAC 1254
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1198 GCAGGAGCTGTTCTGCAGCCTGGTGTTGTTTTGTCTTTCAATGTTGTAGTTGGGCGGGAC 1257
Query 1255 TTTGTTGTACCTGCATATTCAAAGGTCTCTTTACTTCAACAGCCAACTACAGAAGACAGC 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTTGTTGTACCTGCATATTCAAAGGTCTCTTTACTTCAACAGCCAACTACAGAAGACAGC 1317
Query 1315 GATGAAGAGCTGGAATATGCTGATAGTAGCAGCGGGACTGCAGATCATTCGTCAGGCCTA 1374
||||||||| |||||||||||| ||||||||||| ||||||||||| || ||||| ||
Sbjct 1318 GATGAAGAGATGGAATATGCTGGTAGTAGCAGCGAGACTGCAGATCTTTTATCAGGTGTA 1377
Query 1375 AATAATTTGCAAATTGAGTCCAAAGCATCTGAGCTTGGTCCTGATGGAGCAGGTTACATC 1434
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1378 AATAATTTGCAAATTGAGTCCAAAGCATCTGAGCTTGGTCCTGATGGAACAGGTTACATA 1437
Query 1435 TGGGAAATATGTGACAGCGCTCATGATGAGGAGTGGAAACATTCTGTTGTACCAATCCCC 1494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGGGAAGTATGTGACAGCGCTCATGATGAGGAGTGGAAACATTCTGTTGTACCAATCCCC 1497
Query 1495 ATGGATAAACTTGCCGATATCACTGGGGCCATGGACGATGATGACATAGAGGATGACATT 1554
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1498 ATGGATAAACTTGCCGATATCACTCAGGCCATGGACGATGATGACATAGAGGATGAAAGT 1557
Query 1555 GTTGTCCCACCTTCTGGAGAGTTGAAATCTGATACTGATATTATTAACACTGATGCAAAT 1614
|||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1558 GTTGTCCCACCTGCTGGAGAGTTGAAATCCGATACTGATAGTATTAACACTGATGCAAAT 1617
Query 1615 GATTCCTATGGCGACTTTGAGAGAGAGGTTGAAGAAGAA-TTCTTAAGTG-CCGTTGAA- 1671
||| ||||||| ||||||||||||||||||||||| | ||||||| || || || |
Sbjct 1618 GATGACTATGGCTACTTTGAGAGAGAGGTTGAAGAA-ACCTTCTTAA-TGGCCATT-ATT 1674
Query 1672 AAGGATAA-CAAAGCGGAC-ATTGTAATTC-CTTTGATTAACTCACACCGGTTGGCGTAC 1728
|||||| | | | | || || ||||||| ||| ||||||||||| ||| || ||||||
Sbjct 1675 AAGGATGATCT--G-G-ACCAT-GTAATTCGCTT-GATTAACTCACGCCGATTTGCGTAC 1728
Query 1729 AACATGG-ACTCTGCAGATTGTGCTGGAGCAGTATTCTACTCTATGATGAGACTGGCAGT 1787
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 AACATGGCA-TCTGCAGATTGTGCTGGAGCAGTATTCTACTCTATGATGAGACTGGCAGT 1787
Query 1788 AAAGAGTCCACATAATTCTGCTACTGAATTGTACAGAAACGCGATGGGTGTCATAACTAA 1847
||| | ||||||||||||||||| |||||||||||||||||| | | | |||| |||||
Sbjct 1788 AAATACTCCACATAATTCTGCTAGTGAATTGTACAGAAACGCAACGACTATCATTACTAA 1847
Query 1848 ATGGAAGGGAGTTCTTGGGTTCTATTTAAAGCAAACTGATGCACAGATAGAAGTGATAAT 1907
|||||||||| |||||||||| ||||||||||||| ||||| ||||||||| ||||| ||
Sbjct 1848 ATGGAAGGGACTTCTTGGGTTTTATTTAAAGCAAATTGATGAACAGATAGAGGTGATGAT 1907
Query 1908 GAAATTCGAAGAGATGTGTCAGGAATCTGAAGAGTTGAGCCCTTTGTTTGCTAA-ACTTC 1966
||||||||||||||||||| ||||||||||||||||| | |||||||||||||| | ||
Sbjct 1908 GAAATTCGAAGAGATGTGTGAGGAATCTGAAGAGTTGGGGCCTTTGTTTGCTAAGA-TTG 1966
Query 1967 TGCCTTTTCTGTATGACAAAGACGTGGTGCAAGAAGATGCGATCTTGAGATGGGGGGAAG 2026
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1967 TGCATTTTCTGTATGACAAAGACGTGGTGCAAGAAGATGCGATATTGAGATGGGGGGAAG 2026
Query 2027 AGAAAGCAGGAGCAGACGATTGTGACAAAGTTTATCTGAATA-AATGTGAGTCATTCATA 2085
|||||||||| |||||||| | |||||||||||||||||| | |||||||| ||||||||
Sbjct 2027 AGAAAGCAGGCGCAGACGAATCTGACAAAGTTTATCTGAA-ACAATGTGAGGCATTCATA 2085
Query 2086 AAGTGGCTCAAGGAAGCATCTGAGGAGGAAGAAGAAGA 2123
|||||||||||||||||||||||||||||||||||||
Sbjct 2086 CAGTGGCTCAAGGAAGCATCTGAGGAGGAAGAAGAAGA 2123
> Ahg482461 jgi|Araly1|482461|fgenesh2_kg.4__1521__AT2G34970.1
Length=2347
Score = 2063 bits (1117), Expect = 0.0
Identities = 1850/2191 (84%), Gaps = 101/2191 (5%)
Strand=Plus/Plus
Query 1 ATGGGTGCTCAGAAGAAA-CCCGCGGCGGCTAAGG-TTCGTGAGGATTCAGAGGATCTA- 57
|||||||||||||||||| | ||||| |||| || |||| |||||| | | ||| | |
Sbjct 9 ATGGGTGCTCAGAAGAAAGGCGGCGGC-GCTAGGGTTTCG-GAGGATGCGGTGGAAC-AG 65
Query 58 AGTCGTCAACGATTACAAGCCATTCTTCTAGCCGACAGCTTCACCACTCAATTCCGTTCC 117
|||||||||||||| ||||| |||||||| ||||| |||||| |||| |||| ||| ||
Sbjct 66 AGTCGTCAACGATTGCAAGCAATTCTTCTTGCCGATAGCTTCGCCACAAAATTTCGTCCC 125
Query 118 ATAACCCTAGAACGACCAAAGGTACTATTGCCGATAGTGAACATCCCGATGATTGATTAC 177
||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 126 GTAACCCTAGAACGCCCAAAGGTACTATTGCCGATAGTTAATGTTCCGATGATTGATTAT 185
Query 178 ACTTTAGCATGGCTCGAATCAGCTGGGATCGAAGAGGTTTTTGTGTTCTGTTGTGCTCAT 237
|| || |||||||||||||| ||||| || || |||||||| || |||||||||||||||
Sbjct 186 ACATTGGCATGGCTCGAATCTGCTGGAATAGAGGAGGTTTTCGTCTTCTGTTGTGCTCAT 245
Query 238 TCG-TCGCAGATCATCGATTACCTGAAGAAATCGGAATGGTACACACGCCCAAACCCAAA 296
||| | |||| | ||||| || ||| |||| || || |||| || || | |||||||
Sbjct 246 TCGAT-GCAGGTTATCGAATATCTGGAGAAGTCCGAGTGGT--ACTCG--C--ACCCAAA 298
Query 297 CTTG-TTGGTGAGAACGATAGTGTCTCACAATTCCACCAGTGTTGGAGATGCTCTGCGTT 355
|||| || |||||||| || | ||| || || |||| ||||| |||||||||| ||||||
Sbjct 299 CTTGCTT-GTGAGAACAATCGAGTCGCATAAATCCATCAGTGCTGGAGATGCTTTGCGTT 357
Query 356 ATATCTATGAACAACAGACAGAGACGTCGCAGATTCAAGGTGATTTTGTTCTTGTTAGTG 415
| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 ACATGTATGAGCAACAGACAGAGACGTCTCAGATTCAAGGTGATTTTGTTCTTGTTAGTG 417
Query 416 GTGATACTGTTAGTAATATGCCACTTGCTGATTTGATTCAACAACATAGAGATAGGAAGA 475
| |||||||| |||||||||||||| |||||||||||| || |||||||||| |||||||
Sbjct 418 GAGATACTGTGAGTAATATGCCACTAGCTGATTTGATTAAAGAACATAGAGAGAGGAAGA 477
Query 476 AGAAAGATGAGAAAGCTATCATGACTATGGTTTTTAAGAAG-C---A----GT---CT-A 523
|||||||||||||||||||||||||||||||| ||||| || | | | || |
Sbjct 478 AGAAAGATGAGAAAGCTATCATGACTATGGTTATTAAGCAGTCTAAATCTTCTCCACTCA 537
Query 524 -G-A-C--T-AGGAATAGGATCTGATCAACTCTTTGTTGCAGTAGATCCTTTAACGAAA- 576
| | | | | || ||||| | ||||| ||||| |||| ||||||||||| || |||
Sbjct 538 CGCATCAGTCAAGATTAGGAACGGATCAGCTCTTCATTGCTGTAGATCCTTTGAC-AAAG 596
Query 577 CAGCTTCTTCATTACGAGGAATG-T-A-ATTCGA-GAGGC--G-GGGAC-TTTTGCTTAG 628
||||||||||||||||||||| | | | ||| || | | | ||| | |||| ||||
Sbjct 597 CAGCTTCTTCATTACGAGGAA-GATAAGATT-GATCATCCAAGTGGGTCAGTTTGTTTAG 654
Query 629 ATAAGTCCTTGTTGGATAGT-A-----CTG-TTT--TATGCAGTGATATGCAGGATTGTT 679
| ||||| |||||||||| | | ||| ||| |||||| ||||||||||||||| |
Sbjct 655 AGAAGTCATTGTTGGATACTAATCCTTCTGTTTTAGTATGCAATGATATGCAGGATTGCT 714
Query 680 ACATTGACATTTGTTCTCCTGAGGTGCTTAGTCTCTTTGAGGATAACTTTGATTATCAGC 739
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 ACATTGACATATGTTCTCCTGAGGTGCTTAGTCTCTTTGAGGATAACTTTGATTATCAAC 774
Query 740 ATATGCGCCGTCATTTTGTTAATGGTTTGCTTGTTGATGATATTATGGGTTACAAGATTT 799
|| |||| ||||||||||| || ||| |||||||||||||||| |||||||| || ||||
Sbjct 775 ATCTGCGTCGTCATTTTGTCAAAGGTGTGCTTGTTGATGATATCATGGGTTATAAAATTT 834
Query 800 TCACTCATGAGATTCAGTCGAGTTGTTATGCTGCAAGGATCGACAATTTACGGAGCTATG 859
|||||||||||||||| || | | ||||||| ||||| || ||||| || |||||||
Sbjct 835 TCACTCATGAGATTCACTCCA---GCTATGCTGGTAGGATTGATAATTTCCGCAGCTATG 891
Query 860 ACACTGTTAGCAAGGATATAATCCAGAGGTGGACATACCCGTACGTACCTA-ATATCGAT 918
|||||||||||||||||||||| |||||||||||||| || || ||||| | |||| ||
Sbjct 892 ACACTGTTAGCAAGGATATAATTCAGAGGTGGACATATCCTTATGTACC-AGATATAAAT 950
Query 919 TTCAGCGGGAATCGCCCTGTAAAGCTCGGGAGACGGGGGATATACCGGGCTTCTGATGCA 978
|||||||| ||||| ||| | ||||||||||||| |||||||||||||||||||||| |
Sbjct 951 TTCAGCGGAAATCGGCCTCTTAAGCTCGGGAGACAAGGGATATACCGGGCTTCTGATGTA 1010
Query 979 GTTCAATCACACA-CTGCAGATGTTGGAGCTTCCACTGTCATTGGATATGGCACCAAAAT 1037
|||||||||| | |||| |||||||||||||| || ||||||||||| ||||| |||||
Sbjct 1011 GTTCAATCAC-GATCTGCTGATGTTGGAGCTTCTACCGTCATTGGATACGGCACGAAAAT 1069
Query 1038 TGGTAATGGAGG-TAAAATCTATAACTCTGTTATTGGGAACGGATGTTGTATTGGATCAA 1096
||||||||| || |||||||| ||||| ||||||||||| ||||||| |||||||||||
Sbjct 1070 TGGTAATGG-GGATAAAATCTCGAACTCGGTTATTGGGAATGGATGTTCTATTGGATCAA 1128
Query 1097 ATGTGGTGATACAAGGCTCATACATATGGAACAATGTTACGATTGAAGATGGGTGTGAGA 1156
|||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1129 ATGTCGTGATAGAAGGCTCATACATATGGAATAATGTTACGATTGAAGATGGGTGTGAGA 1188
Query 1157 TAAGGAACGCTATTGTCTGTGATGGTGTGAAAGTCAGAGCAGGAGCTGTTCTGCAGCCTG 1216
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1189 TAAGGAACGCTATTGTCTGTGATGGAGTGAAAATCAGAGCAGGAGCTGTTCTGCAGCCTG 1248
Query 1217 GTGTTGTTTTGTCTTTCAGTGTTGTAGTTGGGCGGGACTTTGTTGTACCTGCATATTCAA 1276
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1249 GTGTTGTTTTGTCTTTCAATGTTGTAGTTGGGCGGGACTTTGTTGTGCCTGCATACTCAA 1308
Query 1277 AGGTCTCTTTACTTCAACAGCCAACTACAGAAGACAGCGATGAAGAGCTGGAATATGCTG 1336
|||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1309 AGGTTTCCCTACTTCAACAGCCAACAACAGAAGATAGCGATGAAGAGCTGGAATATGCTG 1368
Query 1337 ATAGTAGCAGCGGGACTGCAGATCATTCGTCAGGCCTAAATAATTTGCAAATTGAGTCCA 1396
||||||||||||||||||||||||||| | ||||||||||| || |||||| |||||||
Sbjct 1369 ATAGTAGCAGCGGGACTGCAGATCATTTGGCAGGCCTAAAT--TT-GCAAATGGAGTCCA 1425
Query 1397 AAGCATCTGAGCTTGGTCCTGATGGAGCAGGTTACATCTGGGAAATATGTGACAGCG-CT 1455
||||||||||||||||||||||||||||||||||||| |||||| |||||| || | ||
Sbjct 1426 AAGCATCTGAGCTTGGTCCTGATGGAGCAGGTTACATATGGGAAGCATGTGA-AGGGGCT 1484
Query 1456 CATGATGAGGAGTGGAAACATTCTGTTGTACCAATCCCCATGGATAAACTTGCCGATATC 1515
||||||||||||||||| |||||||||| ||||||||| | |||||||||| | || ||
Sbjct 1485 CATGATGAGGAGTGGAAGCATTCTGTTGCACCAATCCCGAAGGATAAACTTTCTGAGATT 1544
Query 1516 ACTGGGGCCATGGACGATGATGACA-TAGAGGATGACATTGTTGTCCCACCTTCTGGAGA 1574
|| |||||| ||||||||||||| | || ||||| | ||||||||| ||||||||||
Sbjct 1545 ACCCAGGCCATAGACGATGATGACACT-GATGATGAAAGTGTTGTCCCGGCTTCTGGAGA 1603
Query 1575 GTTGAAATCTGATACTGATATTATTAACACTGATGCAAATGATTCCTATG--G-CGA--- 1628
||||||||||||| | |||| ||| |||||||||| |||||| || ||| | | |
Sbjct 1604 GTTGAAATCTGATGCGGATAGTATAAACACTGATGTGAATGATCCCAATGATGACTATTA 1663
Query 1629 ---CTTTGAGAGAGAGGTTGAAGA-AGAATTCTTAAGTGCCGTTGAAAAGGATAACAAAG 1684
|||||||| ||||||||||| | | |||||| || |||||| || ||| |||||
Sbjct 1664 TTACTTTGAGAAAGAGGTTGAAGGTACCGT-CTTAAGGGCTGTTGAAGAGAATATCAAAG 1722
Query 1685 CGGACATTGTAATTCCTTT-GATTAACTCACACCGGTTGGCGTACAACATGGACTCTGCA 1743
|||| |||||| || | ||||||| | ||||||| | ||||||||||| ||||||
Sbjct 1723 TGGACCTTGTAACTC-TGGAGATTAACGGGCTCCGGTTGTCATACAACATGGAATCTGCA 1781
Query 1744 GATTGTGCTGGAGCAGTATTCTACTCTATGATGAGACTGGCAGTAAAGAGTCCACATAAT 1803
||||||||||||||| ||||||||| ||||| | ||||||||| | | |||||| ||
Sbjct 1782 GATTGTGCTGGAGCAACATTCTACTCGATGATTAAACTGGCAGTTGATACTCCACACAAC 1841
Query 1804 TCTGCTACTGAATTGTACAGAAACGCGATGGGTGTCATAACTAAAT-GGAAGGGAGTTCT 1862
||||||| ||| ||||| | ||||||| | || |||| || |||| |||||| | ||||
Sbjct 1842 TCTGCTAGTGAGTTGTATAAAAACGCGGCGAGTATCATTAC-AAATTGGAAGGAACTTCT 1900
Query 1863 TGGGTTCTATTTAAAGCAAACTGATGCACAGATAGAAGTGATAATGAAATTCGAAGAGAT 1922
||| |||||| ||||| ||| ||||| ||||||||||||||| |||||||| ||||||||
Sbjct 1901 TGGATTCTATGTAAAGAAAATTGATGAACAGATAGAAGTGATTATGAAATTTGAAGAGAT 1960
Query 1923 GTGTCAGGAATCTG--AA-GAGTTGAGCCCTTTGTTTGCTA-A-ACTTCTGCCTTTTCTG 1977
||||||||||||| || |||||| ||||||||||| | | | | |||||| | ||||
Sbjct 1961 GTGTCAGGAATCTCCCAAAGAGTTGGGCCCTTTGTTTAC-ACAGA-TTCTGCATCTTCTA 2018
Query 1978 TATGACAAAGACGTGGTGCAAGAAGATGC-GATCTTGAGATGGGGGGAAGAGAAAGCAGG 2036
|||||||||||||| ||||||||||||| | |||| ||||||| ||||||||||||||
Sbjct 2019 TATGACAAAGACGTCTTGCAAGAAGATGCAG-TCTTAAGATGGGCTGAAGAGAAAGCAGG 2077
Query 2037 AGCAGACGATTG-TGACAAAGTTTATCTGAATA-AATGTGAGT-CATTCATAAAGTGGCT 2093
||||| || | ||||||||| |||||||| | ||||||| | |||||||| |||||||
Sbjct 2078 CGCAGATGAA-GCTGACAAAGTATATCTGAA-ACAATGTGA-TACATTCATACAGTGGCT 2134
Query 2094 CAAGGAAGCATCTGAGGAGGAAGAAGAAGAT 2124
||| |||||||||||||||||||| ||||||
Sbjct 2135 CAAAGAAGCATCTGAGGAGGAAGATGAAGAT 2165
> Ahg477461 jgi|Araly1|477461|fgenesh2_kg.3__162__AT3G02270.1
Length=1277
Score = 309 bits (167), Expect = 5e-83
Identities = 323/395 (82%), Gaps = 23/395 (6%)
Strand=Plus/Plus
Query 656 TATGCAGTGATATGCAGGATTGTTACATTGACATTTGTTCTCCTGAGGTGCTTAGTCTCT 715
|||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||
Sbjct 620 TATGTAGTGATATGCAGGATTGTTACATTGACATATGTTCTCTTGAGATGCTTAGTCACT 679
Query 716 TTGAGGATAACTTTGATTATCAGCATATGCGCCGTCATTTTGTT-AATGGT-TTGCTTGT 773
||| |||||||| ||||| || ||| |||| || ||||||| || ||| || ||||
Sbjct 680 TTGTGGATAACTGCGATTACCAACATCTGCGTTGTGATTTTGTGGAA-GGTGTT-CTTGC 737
Query 774 TGATGATATTATGGGTTACAAGATTTTCACTCATGAGATTCAG-TCGAGTTGTTATGCTG 832
||||||||||| ||||| ||||||||||||||||||||| ||| ||| | |||||||||
Sbjct 738 TGATGATATTACGGGTTTCAAGATTTTCACTCATGAGAT-CAGCTCG--T-GTTATGCTG 793
Query 833 CAAGGATCGACAATTTACGGAGCTATGACACTG-TTAGCAAGGATATAATCCAGAGGTGG 891
| ||||| || || || ||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 794 CTAGGATTGAAAACTTCCGGAGCTATGACA-TGGTTAGCAAGGATATAATCCAGAGGCGG 852
Query 892 ACATACCCGTACGTACCTAATATCGAT-TTCAGCGGGAATCGCCCTGTAAAGCTCGGGAG 950
|||| |||||| ||||| |||| || || ||||| ||||| || | |||||||||||
Sbjct 853 ACATTCCCGTATGTACCGGATAT-GAAGTTGAGCGGAAATCGGTCTCTTAAGCTCGGGAG 911
Query 951 ACGGGGGA--TATACCGGGCTTCTGATGC-AGTTCAATCACACA-CTGCAGATGTTGGAG 1006
|| |||| |||| || |||||||||| | | | |||| || ||| |||||||||
Sbjct 912 ACAAGGGAGCTATAA-GG-CTTCTGATGCTA-TCCGGTCAC-CATCTGTTCATGTTGGAG 967
Query 1007 CTTCCACTGTCATTGGATATGGCACCAAA-ATTGG 1040
|||| ||||||||||| ||| || ||| |||||
Sbjct 968 ATTCCTCTGTCATTGGACATGCCAA-AAAGATTGG 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80141875480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5