BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18320.2
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354918 jgi|Araly1|354918|fgenesh1_pg.C_scaffold_7002091 1042 0.0
> Ahg354918 jgi|Araly1|354918|fgenesh1_pg.C_scaffold_7002091
Length=1023
Score = 1042 bits (564), Expect = 0.0
Identities = 840/965 (87%), Gaps = 52/965 (5%)
Strand=Plus/Plus
Query 535 AGGGATTCATGGGGAAGTTTGCCTCAAGATCTCCTCAGAAGTTCTACAAATTTGCTTAAC 594
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 70 AGGGATTCATGGGGAAGTTTGCCTCAAGAGCTCCTCAGAACATCTACAAATTTGCTTAAC 129
Query 595 CCTAACTTTACCGAAGGTGGGGCACTAAGAG-GTGTCAACACTCATTGGAGGAACACATT 653
||||||||| ||||| || ||||||||| | | ||||||| |||||||||||| || ||
Sbjct 130 CCTAACTTTGCCGAATATGAGGCACTAAG-GCGCGTCAACAGTCATTGGAGGAAAACGTT 188
Query 654 TCTTTCTTTCCGTGAAGGAGGTTTC-GTAGAGGAAAGGCCGTGGTTGTTGTACCGTGAAA 712
|| |||||||||||| ||| ||||| | |||||||||||| |||||||||||||||||||
Sbjct 189 TCCTTCTTTCCGTGATGGAAGTTTCAG-AGAGGAAAGGCCTTGGTTGTTGTACCGTGAAA 247
Query 713 GGGGATCCCGAGTTGCCCATTTCTATGACCCTGTGAGAGAGGAG-CTACATC-ATGGGAA 770
|||||||||| ||||||||||||||||||||||||||| ||| ||||| | || ||||
Sbjct 248 TGGGATCCCGACATGCCCATTTCTATGACCCTGTGAGAGA-GAGTCTACA-CTATAGGAA 305
Query 771 AGACCCATATCTTGAAGGGGCCAAATTCTTAGGATCAACATTGGGTTGGGTTGTTATGTC 830
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AGACCCAAATCTTGAAGGGGCCAAATTCTTAGGATCAACATTGGGTTGGGTTGTTATGTC 365
Query 831 CAACTCCAGTGCCATACACCGACGTC-AAGACCACCAAGCTTTCTTATACAACCCGTTCA 889
|||||||| ||||| ||||||||| | || |||||||| |||||||||||||||| ||||
Sbjct 366 CAACTCCATTGCCACACACCGACG-CGAACACCACCAAACTTTCTTATACAACCCATTCA 424
Query 890 CTTCACAACGGTA-C--C-A---------A-C-TAC--CCC-TTCTCACCACT-GATAAC 930
||||||||||||| | | | | | ||| ||| |||||||| | || |||
Sbjct 425 CTTCACAACGGTACCAACTACCCGTTCTCACCGTACTACCCGTTCTCACCTTTGGA-AAC 483
Query 931 CCA--T-------GTGTGATCCGTTACGGTGTGCTCACCGGAGATCCCCGTCAAGACAAC 981
||| | ||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 484 CCACGTCGGGAGAGTGTGATCCGTTACGGTGTGCTCACGGGAGATCCACGTGAAGACAAT 543
Query 982 ACTTATGCTTGTCTCCTAGCCGATAGCTTTCACGAAAATAATCATATGG-TGATAGCGCA 1040
||||||||||||||||||| ||||||||||||||| ||||||| ||||| | ||| || |
Sbjct 544 ACTTATGCTTGTCTCCTAGGCGATAGCTTTCACGATAATAATCTTATGGAT-ATACCGTA 602
Query 1041 TATGCATGCTCCTAGTCGACAAATATATTATGTAGCCAAGAGTAACGGAGACTGGGATCA 1100
| |||||| ||||| || |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 603 TGTGCATGTTCCTAATCTACAAATATATTATGTAGCCAAGAGGAACGGAGAATGGGATCA 662
Query 1101 GAACTGGTCAGTGACTCGTATCCCTACCTTCA-ACCATCCA-ATTTGTGGTTCGACTATA 1158
| ||||||||||||||| |||||||||| ||| ||||| | |||| | ||||||||||
Sbjct 663 GGACTGGTCAGTGACTCATATCCCTACC-TCATACCAT-GACATTTATAATTCGACTATA 720
Query 1159 GATTCCCTCTCCCCATCTGTGGACAAAATATCAATTATT-TTATGGGGCCATACTCTTGA 1217
| ||| |||||||||||| |||||||||||||||| || |||| || ||||| | ||||
Sbjct 721 CAGTCCATCTCCCCATCTGCGGACAAAATATCAATT-TTATTATCGGACCATAGTTTTGA 779
Query 1218 CTTCACCTTCCGAACCCAA-AATTGGAATGTCTCAAATACTCAAGAGAATGATACCATCG 1276
||||||||||| ||||||| || |||||||||||||| ||||||||||||||| ||||||
Sbjct 780 CTTCACCTTCCAAACCCAAGAA-TGGAATGTCTCAAAGACTCAAGAGAATGATCCCATCG 838
Query 1277 AATGGAATCCTTTCCACGGCCAATCTTTTGATCAGATCAAACATCGACTTCAGATATTTC 1336
| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||
Sbjct 839 ATTGGAATCCTTTCCACGGCCAATCTTTTGATCAGATGAAAGATCGTCTTCAGATATCTC 898
Query 1337 CACAAACTCTAGACATTATCGGCACTAAAACTGATCGCGAGAGAGTGAAAAACCGCACTT 1396
|||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct 899 CACAAACTCTAGCCATTATAGGCACTAAAACTGATCGCGAGAGAGTGAGAAACAACACTT 958
Query 1397 GGGGTGCTAACAAC---CAAATCGTTTCTTACACTGACGGAGTTTGGGTTGAGGTTCGCG 1453
|||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 959 GGGGTGCTAATGACGGTCAAAGCGTTTCTTACATTGACGGAGTTTGGGTTGAGGTTCGCG 1018
Query 1454 CTTAG 1458
|||||
Sbjct 1019 CTTAG 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5