BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18330.2
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493034 jgi|Araly1|493034|fgenesh2_kg.7__2467__AT4G18330.2 2543 0.0
Ahg924959 jgi|Araly1|924959|scaffold_200520.1 1554 0.0
Ahg343503 jgi|Araly1|343503|fgenesh1_pg.C_scaffold_3003266 1406 0.0
Ahg919093 jgi|Araly1|919093|scaffold_100374.1 1236 0.0
Ahg925067 jgi|Araly1|925067|scaffold_200628.1 907 0.0
> Ahg493034 jgi|Araly1|493034|fgenesh2_kg.7__2467__AT4G18330.2
Length=1624
Score = 2543 bits (1377), Expect = 0.0
Identities = 1546/1628 (95%), Gaps = 10/1628 (1%)
Strand=Plus/Plus
Query 3 AAATCGAGACTTTATAGTACTCAGGTTTGTCGGAATCGACTGAGTATCGAAATTATTGTG 62
||| |||||||||| ||||| ||| || |||||||||||||||| |||||||||||||||
Sbjct 1 AAAGCGAGACTTTACAGTACGCAGATTAGTCGGAATCGACTGAGAATCGAAATTATTGTG 60
Query 63 GTGTTTTGTGAACAGAAACCAAGCAGGATTAAAGATGGTT---CAATCTGTGTTAATTTC 119
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 61 GTGTTTTGTGAACAGAAACCAAGCAGGATAAAAGATGGTTCAACAATCTGTGTTAATTTC 120
Query 120 GCGTAACAAGGGTTTGGCGGAGCAAGATCTAACTAAGCTTGATGTAACAAAGTTACATCC 179
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 121 GCGTAACAAGGGTTTGGCTGAGCAAGATCTAAGTAAACTTGATGTAACAAAGTTACATCC 180
Query 180 TCTGTTTCCTGAAGTCATTTCTCGCCAAGCAACCATAAATATCGGAACCATTGGTCATGT 239
||||| ||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 181 TCTGTCTCCCGAGGTCATTTCTCGCCAAGCGACCATAAATATAGGAACCATTGGCCATGT 240
Query 240 CGCTCACGGTAAATCGACTATAGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTTAA 299
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCACACGGTAAATCGACTATTGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTTAA 300
Query 300 GAATGAATTAGAGCGTAACATTACCATTAAGCTTGGTTATGCAAATGCAAAGATTTACAA 359
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 GAATGAACTGGAGCGTAACATTACCATTAAACTTGGTTATGCAAATGCAAAGATTTACAA 360
Query 360 GTGTGAGGATGACAAGTGCCCTAGACCAATGTGCTACAAGTCATATGGGAGTGGAAAAGA 419
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 361 ATGTGAGGATGACAAGTGCCCTAGACCAATGTGTTACAAGTCTTATGGGAGTGGAAAAGA 420
Query 420 AGACAACCC-AACTTGTGATGTCCCCGGATTTGAGAATTGCAAGATGACACTACGGAGAC 478
||||||||| || |||||||||||| ||||||||||| |||||||||| ||||| |||||
Sbjct 421 AGACAACCCGAA-TTGTGATGTCCCTGGATTTGAGAAATGCAAGATGAAACTACTGAGAC 479
Query 479 ATGTCTCATGTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATGGAG 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATGTCTCATTTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATGGAG 539
Query 539 CAGCAATCGTGGATGGTGCTTTACTTCTAATTGCTGCTAACGAGAGTTGTCCACAACCAC 598
|||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 540 CAGCAATCATGGATGGTGCTTTACTTCTAATTGCTGCTAATGAGACTTGTCCACAACCAC 599
Query 599 AAACCGCTGAACATCTTGCTTCTGTTGATATGATGCGCCTTAAGCATATCATAATCCTTC 658
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 AAACTGCTGAACATCTTGCTTCTGTTGATATGATGCGTCTTAAGCATATCATAATCCTTC 659
Query 659 AGAACAAGATTGATCTCATTAATGAGAAAGCCGCCACTGAACAGCACGAGGCTATTCAGA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 660 AGAACAAGATTGATCTCATTAATGAGAAAGCCGCCACTGAACAGCACGAGGCGATTCAGA 719
Query 719 AATTTATAACGAACACGAATGCTGAGGATGCACCTATAGTTCCTGTCTCAGCACAACTGA 778
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 720 AATTTATAACGAACACAAATGCCGAGGATGCACCTATAGTTCCTGTCTCAGCACAACTTA 779
Query 779 AATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATTCCAATCCCTGTGAGAG 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 AATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATACCAATCCCTGTGAGAG 839
Query 839 ACTTTGTGTCACCACCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAACCTGGCT 898
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTTTGTGTCACCGCCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAACCTGGCT 899
Query 899 CGGCGGGTCATGAAATGAAAGGTGGTGTTGCTGGTGGAAGTATCCTCCAGGGTGTTTTGA 958
| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 900 CTGCTGGTCATGAAATGAAAGGTGGAGTTGCTGGTGGAAGTATCCTCCAGGGAGTTTTGA 959
Query 959 AAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAGCATGGAAACT 1018
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 960 AAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAACTTGGAAACT 1019
Query 1019 CAAAATGCACTCCAATTTACTCGCGTATAACTTCACTATACGCGGAACAGAACGAGCTTC 1078
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1020 CAAAATGCACTCCAATTTACTCCCGTATAACTTCACTTTACGCGGAACAGAACGAGCTTC 1079
Query 1079 AGTTTGCTGTACCGGGAGGTCTAATCGGAGTTGGAACAACCATGGACCCTACGCTTACGC 1138
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 AGTTCGCTGTCCCGGGAGGTCTAATTGGAGTTGGAACAACCATGGACCCTACGCTTACGC 1139
Query 1139 GTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGTACTCTCCCTGACGTCTTTG 1198
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1140 GTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGAACTCTCCCTGATGTCTTTG 1199
Query 1199 TTGAGCTTGAAGTAAGTTACCAGCTTCTGACTCGTCTCATTGGAGTGAGGACAAAGGAAA 1258
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTGAGCTTGAAGTAAGTTTCCAGCTTCTGACTCGTCTCATTGGAGTGAGGACAAAGGAAA 1259
Query 1259 AAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATATTGATGGTGAACATCG 1318
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 1260 AAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATACTAATGGTTAACATCG 1319
Query 1319 GGTCTATGTCTACGGGAGCTAAGGTTATTGGAGTCAAGAAAGATATGGTGAAACTCCAAC 1378
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1320 GGTCCATGTCTACAGGAGCTAAGGTTATTGGAGTGAAGAAAGATATGGTGAAACTTCAAC 1379
Query 1379 TGACGTCTCCGGTGTGTACCACCATAGGAGAGAAGGTTGCTTTAAGCCGACGTGTCGATA 1438
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1380 TGACGTCTCCGGTGTGTACCACCATAGGAGAGAAGGTGGCTTTAAGCCGCCGTGTCGATA 1439
Query 1439 GGCATTGGCGTCTAATTGGTAAGGGTCAGATTATGGCTGGAACCACCATCGATGTTCCTC 1498
||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1440 GGCATTGGCGTCTTATTGGTAAGGGTCAGATTCTTGCTGGAACCACCATCGATGTTCCTC 1499
Query 1499 CTCCTCCTTTCTAATGAAGTAGTGATGAGTTTTTTATATTGTTTGCATTCAAAAATAATT 1558
||||||||||||||||| |||||||||| |||||| | || ||||||||||||||||||
Sbjct 1500 CTCCTCCTTTCTAATGAGGTAGTGATGAATTTTTT-T-TT-TTTGCATTCAAAAATAATA 1556
Query 1559 AACATGTG--CCTTTGTATGTTTAATCACTTTCTTTCGACTACAATATAAAACTATATTC 1616
|||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1557 AACATGTGAACCTTTGTATGTTCGATCACTTTCTTTCGACTTCAATATAAAACTATATTC 1616
Query 1617 ATATTTAA 1624
||||||||
Sbjct 1617 ATATTTAA 1624
> Ahg924959 jgi|Araly1|924959|scaffold_200520.1
Length=1441
Score = 1554 bits (841), Expect = 0.0
Identities = 1214/1394 (87%), Gaps = 26/1394 (2%)
Strand=Plus/Plus
Query 126 CAAGGGTTTGGCGGAGCAAGATCTAACTAAGCTTGATGTAACA-AAGTTACATCCTCTGT 184
||||||||| || || |||||||||| |||||||||||||| | || ||||||||||||
Sbjct 32 CAAGGGTTTAGCTGAACAAGATCTAAGTAAGCTTGATGTAA-ATGAGCTACATCCTCTGT 90
Query 185 TTCCTGAAGTCATTTCTCGCCAAGCAACCATAAATATCGGAACCATTGGTCATGTCGCTC 244
||| || ||||| |||||||| ||||||||||| || ||||||||||| ||||| || |
Sbjct 91 CTCCCGAGGTCATATCTCGCCAGGCAACCATAAACATAGGAACCATTGGACATGTTGCAC 150
Query 245 ACGGTAAA-TCGACTATAGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTTAAGAAT 303
|||| ||| || || | ||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 151 ACGG-AAAGTCTACGGTTGTGAAAGCTATTTCTGGTGTGCAGACTGTCCGTTTTAAGAAT 209
Query 304 GAATTAGAGCGTAACATTACCATTAAGCTTGGTTATGCAAATGCAAAGATTTA-CAAGTG 362
||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||
Sbjct 210 GAATTGGAGCGTAACATTACCATTAAACTTGGATATGCAAATGCCAAGATTTACCAA-TG 268
Query 363 TGAGGATGACAAGTGCCCTAGACCAATGTGCTACAAGTCATATGGGAGTGGAAAAGAAGA 422
||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 269 TGAGGATAACAAGTGCCCTAGACCAATGTGCTACAAGTCTTATGGGAGTGGGAAAGAAGA 328
Query 423 CAACCCAACTTGTGATGTCCCCGGATTTGAGAATTGCAAGATGACA-CTACGGAGACATG 481
|||||||| ||| ||||||| ||||||||||| |||||||||| | |||| ||| ||||
Sbjct 329 CAACCCAAATTGCCATGTCCCTGGATTTGAGAACTGCAAGATGA-AGCTACTGAGGCATG 387
Query 482 TCTCATGTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATGGAGCAG 541
|||| | ||| ||||| ||||||||||||||||| ||||| |||||||||||||| || |
Sbjct 388 TCTCCTTTGTGGATTGCCCGGGACATGATATTCTCATGGCCACAATGCTCAATGGGGCCG 447
Query 542 CAATCGTGGATGGTGCTTTACTTCTAATTGCTGCTAACGAGAGT-TGTCCACAACCACAA 600
| ||| ||||||||||| ||||| |||||||||| || ||| || ||||| ||||||||
Sbjct 448 CCATCATGGATGGTGCTCTACTTTTAATTGCTGCGAATGAG-GTCTGTCCTCAACCACAG 506
Query 601 ACCGCTGAACATCTTGCTTCTGTTGATATGATGCGCCTTAAGCATATCATAATCCTTCAG 660
|| ||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||
Sbjct 507 ACAGCTGAACATCTTGCTTCCGTCGATATGATGCACCTTAAGCATATTATAATCCTTCAG 566
Query 661 AACAAGATTGATCTCATT-AATGAGAAAGCCGCCACT-GAACAGCACGA-GGCTATTCAG 717
|||||||||||||||||| || || |||||||||| | ||||||||| | ||| ||||||
Sbjct 567 AACAAGATTGATCTCATTCAA-GAAAAAGCCGCCA-TCGAACAGCAC-ACGGCAATTCAG 623
Query 718 AAATTTATAACGAACACGAATGCTGAGGATGCACCTATAGTTCCTGTCTCAGCACAACTG 777
| ||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 624 AGATTTATAACGAACACAAATGCCGAGGGTGCCCCTATAGTTCCTGTCTCAGCACAACTG 683
Query 778 AAATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATTCCAATCCCTGTGAGA 837
|||||||||||||||| |||| | || ||||||||||||||||||||||||||| ||
Sbjct 684 AAATACAACATTGATGCTGTGTGCGAGTACATTGTCAAGAAGATTCCAATCCCTAAAAGG 743
Query 838 GACTTTGTGTCACCACCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAACCTGGC 897
|| ||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 744 GATTTTGTGTCACCGCCAAAGATGATAATCATTCGTTCTTTTGATGTCAATAAACCTGGC 803
Query 898 TCGGCGGGT-CATGAAATGAAAGGTGGTGTTGCTGGTGGAAGTATCCTCCAGGGTGTTTT 956
| | || | | ||| || |||||||| || || |||||||||||| ||| |||||||||
Sbjct 804 TATGAGGTTAC-TGATATTAAAGGTGGAGTGGCAGGTGGAAGTATCTTCCGGGGTGTTTT 862
Query 957 GAAAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAGCATGGAAA 1016
|||||| |||||| ||||||| || ||||||||||| | |||||||||||| ||||||
Sbjct 863 GAAAGTAAACCAATTGATTGAGATCCGACCTGGTATCGTTAGCAAAGATGAGCTTGGAAA 922
Query 1017 CTCAAAATGCACTCCAATTTACTCGCGTATAACTTCACTATACGCGGAACAGAACGAGCT 1076
| ||| |||| |||| |||||||| ||||| |||||| | ||||| ||||||||||||||
Sbjct 923 CCCAAGATGCTCTCCCATTTACTCCCGTATCACTTCATTGTACGCAGAACAGAACGAGCT 982
Query 1077 TCAGTTTGCTGTACCGGGAGGTCTAATCGGAGTTGGAACAACCATGGACCCTACGCTTAC 1136
|||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 983 TCAGTTTGCTGTGCCGGGAGGTCTGATCGGAGTTGGGACAACGATGGACCCTACGCTCAC 1042
Query 1137 GCGTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGTACTCTCCCTGACGTCTT 1196
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1043 GCGTGCTGATAGGTTGGTTGGTCAAGTGCTTGGTGAAATGGGTTCTCTCCCTGATGTCTA 1102
Query 1197 TGTTGAGCTTGAAGTAAGTTACCAGCTTCTGACTCGTCTCATTGGAGTGAGGACAAAGGA 1256
|||||||||||| || |||| |||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1103 TGTTGAGCTTGAGGTGAGTTTCCAGCTTCTGACCCGTCTTATTGGGGTGAGGACAAAGGA 1162
Query 1257 AAAAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATATTGATGGTGAACAT 1316
|||||||||||| ||||||||| ||||||||| ||| | ||||||| |||||||||||||
Sbjct 1163 AAAAGAGAAGCAGATGAAAGTGGCAAAGCTAAGCAAGGGAGAGATACTGATGGTGAACAT 1222
Query 1317 CGGGTCTATGTCTACGGGAGCTAAGGTTATTGGAGTCAAGAAAGATATGGTGAAACTCCA 1376
|||||| ||||| |||||||||||||| | ||||| |||||||||||| ||||| | ||
Sbjct 1223 CGGGTCGATGTCGGCGGGAGCTAAGGTTCTAGGAGTGAAGAAAGATATGATGAAAGTGCA 1282
Query 1377 ACTGAC-GTCTCCGGTGTGTACCACCATAGGAGAGAAGGTTGCTTTAAGCCGACGTGTCG 1435
|||||| || || || || |||| ||||||||||||||| ||| ||||||| |||||||
Sbjct 1283 ACTGACAGTG-CCTGTCTGCACCAACATAGGAGAGAAGGTGGCTCTAAGCCGCCGTGTCG 1341
Query 1436 ATAGGCATTGGCGTCTAATTGGTAAG-GGTCAGATT-ATGGCTGGAACCACCAT-CGATG 1492
| |||||||||||| | |||||| | ||||||||| | ||||||||||||| | | |
Sbjct 1342 ACAGGCATTGGCGTTTGATTGGTC-GTGGTCAGATTGA-GGCTGGAACCACCGTTCCC-G 1398
Query 1493 TTCCTCCTCCTCCT 1506
| ||||||||||||
Sbjct 1399 TCCCTCCTCCTCCT 1412
> Ahg343503 jgi|Araly1|343503|fgenesh1_pg.C_scaffold_3003266
Length=1398
Score = 1406 bits (761), Expect = 0.0
Identities = 1181/1381 (86%), Gaps = 40/1381 (3%)
Strand=Plus/Plus
Query 124 AACAAGGGTTTGGCGGAGCAAGATCTAACTAAGCTTGATGTAACAAAGTTACATCCTCTG 183
|||||||| || || || |||||||||| ||| ||||||||| | || ||||||||||
Sbjct 10 AACAAGGGCTTAGCTGAACAAGATCTAAGTAAACTTGATGTAGCTCAGCTACATCCTCTC 69
Query 184 TTTCCTGAAGTCATTTCTCGCCAAGCAACCATAAATATCGGAACCATTGGTCATGTCGCT 243
| |||||| ||||| ||||| ||||| || || ||||| || || ||||| ||||| |||
Sbjct 70 TCTCCTGAGGTCATCTCTCGACAAGCCACAATTAATATAGGGACTATTGGCCATGTTGCT 129
Query 244 CACGGTAAATCGACTATAGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTTAAGAAT 303
||||| |||||||| || ||||||||||| || ||||| || ||||| ||||||| |
Sbjct 130 CACGGGAAATCGACAATCGTGAAAGCTATTTCCGGTGTGCATACTGTTAAATTTAAGAGT 189
Query 304 GAATTAGAGCGTAACATTACCATTAAGCTTGGTTATGCAAATGCAAAGATTTACAAGTGT 363
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 190 GAATTGGAGCGTAACATTACCATTAAACTTGGTTATGCAAACGCAAAGATTTACAAATGT 249
Query 364 GAGGATGACAAGTGCCCTAGACCAATGT-G-CTACAAGTCATAT-GGGAGTGGAAAAGAA 420
|| | | || ||||||||||| | || | ||||||||| | | |||||||| ||||||
Sbjct 250 GA--A--A-AA-TGCCCTAGACC-A-GTAGCCTACAAGTC-TTTCGGGAGTGGCAAAGAA 300
Query 421 GACAACCCAACTTGTGATGTCCCCGGATTTGAGAAT-TGCAAGATGACACTACGGAGACA 479
||||| ||||||||||||||| | ||| |||| || |||||||||| ||||| ||||||
Sbjct 301 GACAATCCAACTTGTGATGTCTCTGGACATGAG-ATGTGCAAGATGAAACTACTGAGACA 359
Query 480 TGTCTCATGTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATGGAGC 539
|||||||| |||||||||||||||||| |||||||| |||||||||||| | ||||||||
Sbjct 360 TGTCTCATTTGTCGATTGTCCGGGACACGATATTCTGATGGCGACAATGTTGAATGGAGC 419
Query 540 AGCAATCGTGGATGGTGCTTTACTTCTAATTGCTGCTAACGAGAGTTGTCCACAACCACA 599
||| || ||||||||||| |||| | |||||||| || |||| ||||| ||||||||
Sbjct 420 AGCGATTATGGATGGTGCTCTACTAATCATTGCTGCAAATGAGACATGTCCGCAACCACA 479
Query 600 AACCGCTGAACATCTTGCTTCTGTTGATATGATGCGCCTT-AAGCATATCATAATCCTTC 658
||| || |||||||||||||||||||||||||||| |||| ||| ||||||||||| |||
Sbjct 480 AACTGCAGAACATCTTGCTTCTGTTGATATGATGCACCTTAAAG-ATATCATAATCATTC 538
Query 659 AGAACAAGATTGATCTCAT-TAATGAGAAA-GCCGCCACTGA-ACAGCACGAGG-CTATT 714
||||||||||||||||||| || || ||| | || | || ||||||||||| | |||
Sbjct 539 AGAACAAGATTGATCTCATCCAA-GA-AAACGAGGCTA-GGAGACAGCACGAGGAC-ATT 594
Query 715 CAGAAATTTATAACGAACACGAATGCTG-AGGATGCACCTATAGTTCCTGTCTCAGCACA 773
|||| ||||||||||||||| ||||| | ||| ||| |||||||||||||||||||||||
Sbjct 595 CAGAGATTTATAACGAACACAAATGCGGAAGG-TGCTCCTATAGTTCCTGTCTCAGCACA 653
Query 774 ACTGAAATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATTCCAATCCCTGT 833
||||||||||||||| ||||||||| | || ||||| ||||||||||||||||||||||
Sbjct 654 ACTGAAATACAACATCGATGTTGTGTGCGAGTACATAGTCAAGAAGATTCCAATCCCTGA 713
Query 834 GAGAGACTTTGTGTCACCACCAAAGA-TGATTGTGATTCGTTCTTTCGATGTCAATAAAC 892
||| || ||||||||||| |||| || ||||||||||||||||||| |||||||||||||
Sbjct 714 GAGGGATTTTGTGTCACCTCCAA-GAATGATTGTGATTCGTTCTTTTGATGTCAATAAAC 772
Query 893 CTGGCTCGG-CGGGTCATGAAATGAAAGGTGGTGTTGCTGGTGGAAGTATCCTCCAGGGT 951
||||||| | | | |||| ||||||||||| || || |||||||||||||||||||||
Sbjct 773 CTGGCTCTGACTA-TAATGATATGAAAGGTGGAGTCGCAGGTGGAAGTATCCTCCAGGGT 831
Query 952 GTTTTGAAAGTGAACCA-ACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAGCA 1010
|||||||||||| || | | || || ||| ||||||| || |||||||||||||||||
Sbjct 832 GTTTTGAAAGTGGGGCATA-TAATAGAGATTCGACCTGGAATTACTGGCAAAGATGAGCA 890
Query 1011 TGGAAACTCAAAATGCACTCCAATTTACTCGCGTATAACTTCACTATACGCGGAACAGAA 1070
|||| || | ||||||||||| |||||| |||||||||||||| | ||||||||||||||
Sbjct 891 TGGAGACACTAAATGCACTCCCATTTACACGCGTATAACTTCATTGTACGCGGAACAGAA 950
Query 1071 CGAGCTTCAGTTTGCTGTACCGGGAGGTCTAATCGG-AGTTGGAACAACCATGGACCCTA 1129
|||||||||||||||||| ||||||||| |||| || | |||| |||| |||||| ||||
Sbjct 951 CGAGCTTCAGTTTGCTGTCCCGGGAGGTTTAATTGGGA-TTGGGACAAGCATGGATCCTA 1009
Query 1130 CGCTTACGCGTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGTACTCTCCCTG 1189
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1010 CGCTTACGCGTGGTGATAGGTTAGTTGGTCAAGTCCTTGGTGAAATAGGTACTCTCCCTG 1069
Query 1190 ACGTCTTTGTTGAGCTTGAAGTAAGTTACCAGCTTCTGACTCGTCTCATTGGAGTGAGGA 1249
| |||| |||||||||||||||||||| |||||||||||| |||||||||||||| | ||
Sbjct 1070 ATGTCTATGTTGAGCTTGAAGTAAGTTTCCAGCTTCTGACACGTCTCATTGGAGTAAAGA 1129
Query 1250 CAAAGGAAAAAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATATTGATGG 1309
||||||||| ||||| |||||||| |||||||||||||| ||| | |||| || |||||
Sbjct 1130 CAAAGGAAACAGAGAGGCAAATGAGAGTGTCAAAGCTAATCAAGGGAGAGGTACTGATGT 1189
Query 1310 TGAACATCGGGTCTATGTCTACGGGAGCTAAGGTTATTGGAGTCAAGAAAGATATGGTGA 1369
|||| ||||| || ||||| |||||||||| |||||||||||| |||||||||||| |||
Sbjct 1190 TGAATATCGGATCAATGTCGACGGGAGCTATGGTTATTGGAGTAAAGAAAGATATGATGA 1249
Query 1370 AACTCCAACTGACGTCTCCG-GTGTGTACCACCATAGGAGAGAAGGTTGCTTTAAGCCGA 1428
|| | |||||||| |||| || || |||| |||||||||||| || ||| |||| ||
Sbjct 1250 AAGTGAAACTGACG-CTCCCTGTATGCACCAACATAGGAGAGAAAGTGGCTATAAGTCGC 1308
Query 1429 CGTGTCGATAGGCATTGGCGTCTAATTGGTAAG-GGTCAGATT-ATGGCTGGAACCACCA 1486
||||| ||||||||||||||| | || ||| | ||||||||| | ||||||||||||||
Sbjct 1309 CGTGTTGATAGGCATTGGCGTTTGATCGGTC-GCGGTCAGATTGA-GGCTGGAACCACCA 1366
Query 1487 T 1487
|
Sbjct 1367 T 1367
> Ahg919093 jgi|Araly1|919093|scaffold_100374.1
Length=1442
Score = 1236 bits (669), Expect = 0.0
Identities = 1193/1443 (83%), Gaps = 48/1443 (3%)
Strand=Plus/Plus
Query 94 AAGATGGTTCAATCTGTGTTAATTTCGCGTAACAAGGGTTTGGCGGAGCAAGATC-TAAC 152
|||| | |||||||| || |||| ||| | ||||| |||||||| |||||||||| |||
Sbjct 4 AAGAAGCTTCAATCTTTGATAATGTCGAGGAACAAAGGTTTGGCTGAGCAAGATCTTAA- 62
Query 153 TAAGCTT-GATGTAACAAAGTTACATCCTCTGTTTCCTGAAGTCATTTCTCGCCAAGCAA 211
|| || |||||||| | |||||||| ||| ||||| |||||||||||||| || |
Sbjct 63 -AAAATTGGATGTAACTGTGCTACATCCTTTGTCCCCTGAGGTCATTTCTCGCCAGGCCA 121
Query 212 CCATAAATATCGGAACCATTGGTCATGTCGCTCACGGTAAA-TCGACTATAGTGAAAGCT 270
| || ||||| ||||||||||| ||||||||||| || ||| || ||| | |||||||||
Sbjct 122 CTATTAATATAGGAACCATTGGCCATGTCGCTCATGG-AAAGTCCACTGTTGTGAAAGCT 180
Query 271 ATCTCTGGTGTTCAGACTGTGCGTTTTAAGAATGAATTAGAGCGTAACATTACCATTAAG 330
|| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ATTTCTGGTGTCCAGACTGTCCGTTTTAAGAATGAATTGGAGCGTAACATTACCATTAAG 240
Query 331 CTTGGTTATGCAAATGCAAAGATTTACAAGTGTGAGGATGACAAGTGCCCTAGACCAATG 390
||||| ||||||||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct 241 CTTGGATATGCAAATGCTAAGATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATG 300
Query 391 TGCTACAAGTCATATGGGAGTGGAAAAGAAGACAAC-CCAACTTGTGATGTCCCCGGATT 449
||||||||| | || || ||||||||||||||| || |||| ||||||||||||||||||
Sbjct 301 TGCTACAAGGCCTACGGAAGTGGAAAAGAAGAC-ACTCCAAATTGTGATGTCCCCGGATT 359
Query 450 TGAGAATTGCAAGATGACACTACGGAGACATGTCTCATGT-GTCGATTGTCCGGGACATG 508
||| || | |||||||| |||| ||| ||||| |||| | || ||||| |||||||| |
Sbjct 360 TGAAAACTCCAAGATGAAACTATTGAGGCATGTGTCAT-TCGTGGATTGCCCGGGACACG 418
Query 509 ATATTCTTATGGCGACAATGCTCAATGGAGCAGCAATCGTGGATGGTGCTTTACTTC-TA 567
||||||| ||||| |||||||| || |||||||| ||| |||||||||| ||| || ||
Sbjct 419 ATATTCTCATGGCAACAATGCTTAACGGAGCAGCCATCATGGATGGTGCACTAC-TCTTA 477
Query 568 ATTGCTGCTAACGAGA-GTTGTCCACAACCACAAACCG-CTGAACATCTTGCTTCTGTTG 625
|| ||||| || |||| | ||||| |||||||||| || |||||||||||||| | || |
Sbjct 478 ATCGCTGCAAATGAGACG-TGTCCGCAACCACAAA-CGTCTGAACATCTTGCTGCCGTCG 535
Query 626 ATATGATGCGCCTT-AAGCATATCATAATCCTTCAGAACAAGATTGATCTCATT-AATGA 683
| || |||| || ||||||||||| ||||||||||||||||||||||| ||| || ||
Sbjct 536 AGATTATGC-AATTGAAGCATATCATCATCCTTCAGAACAAGATTGATCTTATTCAA-GA 593
Query 684 GAAAGCCGCCACTGAA-CAGCACGAGGCTATTCAGAAATTTATAACGAACAC-GAATGCT 741
||| | |||| | || ||||||||||| |||||||||||||||| |||||| | |||
Sbjct 594 GAACGTTGCCA-TTAATCAGCACGAGGCAATTCAGAAATTTATAATGAACACTG-TTGCG 651
Query 742 GAGGATGCACCTATAGTTCCTGTCTCAGCACAACTGAAATACAACATTGATGTTGTGAGT 801
|| | ||| || || || || |||||||||||||||||||||||||| ||||||||| |
Sbjct 652 GATGCTGCTCCAATCGTCCCCGTCTCAGCACAACTGAAATACAACATCGATGTTGTGTGC 711
Query 802 GAATACATTGTCAAGAAGATTCCAATCCCTGTGA-GAGACTTTGTGTCACCACCAAAGAT 860
|| ||||| ||||||||||| |||||||||| || || | ||||||||||| ||||| ||
Sbjct 712 GAGTACATAGTCAAGAAGATCCCAATCCCTGAGAGGA-ATTTTGTGTCACCCCCAAATAT 770
Query 861 GATTGTGATTCGTTCTTTCGATGTCAATAAACCTGGCTCGGCGGGTCATGAAATGAAAGG 920
||| |||||||| ||||| |||||||| |||||||| | | || | |||| || |||||
Sbjct 771 GATAGTGATTCGATCTTTTGATGTCAACAAACCTGGTTATGAGGTTGATGAGATTAAAGG 830
Query 921 TGGTGTTGCTGGTGGAAGTATCCTCCAGGGTGTTTTGAAAGTGAACCAACTGATTGAAAT 980
||| ||||| |||||||||||||||| ||||||||||||||| |||||| | ||||||||
Sbjct 831 TGGAGTTGCAGGTGGAAGTATCCTCCGGGGTGTTTTGAAAGTCAACCAATTAATTGAAAT 890
Query 981 TAGACCTGGTATCACTGGC-AAAGATGAGCATGGAAACTCAAAATGCACTCCAATTTACT 1039
||||||||||| | | ||||| |||| ||| |||||||||||||||||||||||||
Sbjct 891 CCGACCTGGTATC-GTTACAAAAGACGAGCGTGGCAACTCAAAATGCACTCCAATTTACT 949
Query 1040 CGCGTATAACT-TCACTATACGCGGAACAGAACGAGCTTCAGTTTGCTGTACC-GGGAGG 1097
| || |||| | ||||| |||||||||||||||||||||||||||||||| || ||| ||
Sbjct 950 CTCGCATAA-TCTCACTCTACGCGGAACAGAACGAGCTTCAGTTTGCTGTTCCTGGG-GG 1007
Query 1098 TCTAATCGGAGTTGGAACAACCATGGACCCTACGCTTACGCGTGCTGATAGGTTGGTTGG 1157
|||||| |||||||| ||||| |||||||| || ||||| ||||| ||| | || |||||
Sbjct 1008 TCTAATAGGAGTTGGGACAACAATGGACCCAACTCTTACTCGTGCAGATCGATTAGTTGG 1067
Query 1158 TCAAGTCCTTGGTGAAATGGGTACTCTCCCTGACGTCTTTGTTGAGCTTGAAGT-AAGTT 1216
|||||||||||||||||| ||| | || ||||| ||||||||||| || || || || ||
Sbjct 1068 TCAAGTCCTTGGTGAAATCGGTTCACTTCCTGATGTCTTTGTTGAACTCGAGGTTAACTT 1127
Query 1217 ACCAGCTTCTGACT-CGTCTCATTGG-AGTGAGGACAAAGGAAAAAGAGAAGCAAATGAA 1274
| ||||| || ||| | |||| |||||| ||||||| | |||||| ||| |||
Sbjct 1128 -CTTTCTTCT-ACGACGTTTG-TTGGGAGTGAGAACAAAGGGATCAGAGAAACAAGGGAA 1184
Query 1275 AGTGTCAAAGCTAACCAAAGAAGAGATAT-TGATGGTGAACATCGGGTCTATGTCTACGG 1333
|||||||||||||| || | |||||| | ||||| | ||||| || |||||||| || |
Sbjct 1185 GGTGTCAAAGCTAACGAAGGGAGAGAT-TCTGATGCTCAACATTGGTTCTATGTCCACTG 1243
Query 1334 GAGCTAAGGTTATTGGAGTCAA-GAAAGATATGG-TGAAACTCCAACTGAC-GTCTCCGG 1390
|||| || ||| | ||||| || | ||| ||| | ||||| |||||||| | | ||||
Sbjct 1244 GAGCCAAAGTTGTGGGAGTTAAAGTC-GATCTGGCT-AAACTGCAACTGACAG-CGCCGG 1300
Query 1391 TGTGTACCACCATAGGAGAGAAGGTTGCTTTAAGCCGACGTGTCGATAGGCATTGGCGTC 1450
| ||||||| || ||||||||| || ||| ||||| | ||||| || | ||||||||||
Sbjct 1301 TTTGTACCAGCAAAGGAGAGAAAGTGGCTCTAAGCAGGCGTGTGGAAAAGCATTGGCGTT 1360
Query 1451 TAATTGGTAAGGGTCAGATT-ATGGCTGGAACCACCATCGATGTTCCTCCTCCTCCTTTC 1509
| |||||| |||||||||| | | ||||||||||||| || ||||||||| | ||||||
Sbjct 1361 TGATTGGTTGGGGTCAGATTCAAG-CTGGAACCACCATTGAAGTTCCTCCTTCACCTTTC 1419
Query 1510 TAA 1512
|||
Sbjct 1420 TAA 1422
> Ahg925067 jgi|Araly1|925067|scaffold_200628.1
Length=1399
Score = 907 bits (491), Expect = 0.0
Identities = 691/787 (88%), Gaps = 16/787 (2%)
Strand=Plus/Plus
Query 120 GCGTAACAAGGGTTTGGCGGAGCAAGATCTAACTAAGCTTGATGTAACA-AAGTTACATC 178
||| ||||||||||| || || |||||||||| |||||||||||||| | || ||||||
Sbjct 26 GCGGAACAAGGGTTTAGCTGAACAAGATCTAAGTAAGCTTGATGTAA-ATGAGCTACATC 84
Query 179 CTCTGTTTCCTGAAGTCATTTCTCGCCAAGCAACCATAAATATCGGAACCATTGGTCATG 238
|||||| ||| || ||||| |||||||| ||||||||||| || ||||||||||| ||||
Sbjct 85 CTCTGTCTCCCGAGGTCATATCTCGCCAGGCAACCATAAACATAGGAACCATTGGACATG 144
Query 239 TCGCTCACGGTAAA-TCGACTATAGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTT 297
| || ||||| ||| || || | ||||||||||| |||||||| |||||||| ||||||
Sbjct 145 TTGCACACGG-AAAGTCTACGGTTGTGAAAGCTATTTCTGGTGTGCAGACTGTCCGTTTT 203
Query 298 AAGAATGAATTAGAGCGTAACATTACCATTAAGCTTGGTTATGCAAATGCAAAGATTTA- 356
||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 204 AAGAATGAATTGGAGCGTAACATTACCATTAAACTTGGATATGCAAATGCCAAGATTTAC 263
Query 357 CAAGTGTGAGGATGACAAGTGCCCTAGACCAATGTGCTACAAGTCATATGGGAGTGGAAA 416
||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 264 CAA-TGTGAGGATAACAAGTGCCCTAGACCAATGTGCTACAAGTCTTATGGGAGTGGGAA 322
Query 417 AGAAGACAACCCAACTTGTGATGTCCCCGGATTTGAGAATTGCAAGATGACA-CTACGGA 475
|||||||||||||| ||| |||||||| ||||||||||| |||||||||| | |||| ||
Sbjct 323 AGAAGACAACCCAAATTGCGATGTCCCTGGATTTGAGAACTGCAAGATGA-AGCTACTGA 381
Query 476 GACATGTCTCATGTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATG 535
| |||||||| | ||| ||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 382 GGCATGTCTCCTTTGTGGATTGCCCGGGACATGATATTCTCATGGCCACAATGCTCAATG 441
Query 536 GAGCAGCAATCGTGGATGGTGCTTTACTTCTAATTGCTGCTAACGAGAGT-TGTCCACAA 594
| || || ||| ||||||||||| ||||| |||||||||| || ||| || ||||| |||
Sbjct 442 GGGCCGCCATCATGGATGGTGCTCTACTTTTAATTGCTGCGAATGAG-GTCTGTCCTCAA 500
Query 595 CCACAAACCGCTGAACATCTTGCTTCTGTTGATATGATGCGCCTTAAGCATATCATAATC 654
||||| || ||||||||||||||||| || |||||||||| |||||||||||| ||||||
Sbjct 501 CCACAGACAGCTGAACATCTTGCTTCCGTCGATATGATGCACCTTAAGCATATTATAATC 560
Query 655 CTTCAGAACAAGATTGATCTCATT-AATGAGAAAGCCGCCACT-GAACAGCACGA-GGCT 711
|||||||||||||||||||||||| || || |||||||||| | ||||||||| | ||
Sbjct 561 CTTCAGAACAAGATTGATCTCATTCAA-GAAAAAGCCGCCA-TCGAACAGCAC-ACAGCA 617
Query 712 ATTCAGAAATTTATAACGAACACGAATGCTGAGGATGCACCTATAGTTCCTGTCTCAGCA 771
||||||| ||||||||||||||| ||||| |||| ||| |||||||||||||||||||||
Sbjct 618 ATTCAGAGATTTATAACGAACACAAATGCCGAGGGTGCCCCTATAGTTCCTGTCTCAGCA 677
Query 772 CAACTGAAATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATTCCAATCCCT 831
|||||||||||||||||||||| |||| | || |||||||||||||||||||||||||||
Sbjct 678 CAACTGAAATACAACATTGATGCTGTGTGCGAGTACATTGTCAAGAAGATTCCAATCCCT 737
Query 832 GTGAGAGACTTTGTGTCACCACCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAA 891
|| || ||||||||||| ||||||||||| | ||||||||||| ||||||||||||
Sbjct 738 AAAAGGGATTTTGTGTCACCGCCAAAGATGATAATCATTCGTTCTTTTGATGTCAATAAA 797
Query 892 CCTGGCT 898
|||||||
Sbjct 798 CCTGGCT 804
Score = 621 bits (336), Expect = 5e-177
Identities = 489/563 (87%), Gaps = 10/563 (2%)
Strand=Plus/Plus
Query 949 GGTGTTTTGAAAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAG 1008
|||||||||||||| |||||| ||||||| || ||||||||||| | |||||||||||
Sbjct 813 GGTGTTTTGAAAGTAAACCAATTGATTGAGATCCGACCTGGTATCGTTAGCAAAGATGAG 872
Query 1009 CATGGAAACTCAAAATGCACTCCAATTTACTCGCGTATAACTTCACTATACGCGGAACAG 1068
| ||||||| ||| ||| |||| |||||||| ||||| |||||| | ||||| ||||||
Sbjct 873 CTTGGAAACCCAAGGTGCTCTCCCATTTACTCCCGTATCACTTCATTGTACGCAGAACAG 932
Query 1069 AACGAGCTTCAGTTTGCTGTACCGGGAGGTCTAATCGGAGTTGGAACAACCATGGACCCT 1128
|||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 933 AACGAGCTTCAGTTTGCTGTGCCGGGAGGTCTGATCGGAGTTGGGACAACGATGGACCCT 992
Query 1129 ACGCTTACGCGTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGTACTCTCCCT 1188
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 993 ACGCTCACGCGTGCTGATAGGTTGGTTGGTCAAGTGCTTGGTGAAATGGGTTCTCTCCCT 1052
Query 1189 GACGTCTTTGTTGAGCTTGAAGTAAGTTACCAGCTTCTGACTCGTCTCATTGGAGTGAGG 1248
|| |||| |||||||||||| || |||| |||||||||||| ||||| ||||| ||||||
Sbjct 1053 GATGTCTATGTTGAGCTTGAGGTGAGTTTCCAGCTTCTGACCCGTCTTATTGGGGTGAGG 1112
Query 1249 ACAAAGGAAAAAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATATTGATG 1308
|||||||||||||||||||| ||||||||| ||||||||| ||| | ||||||| |||||
Sbjct 1113 ACAAAGGAAAAAGAGAAGCAGATGAAAGTGGCAAAGCTAAGCAAGGGAGAGATACTGATG 1172
Query 1309 GTGAACATCGGGTCTATGTCTACGGGAGCTAAGGTTATTGGAGTCAAGAAAGATATGGTG 1368
|||||||||||||| ||||| |||||||||||||| | ||||| |||||||||||| ||
Sbjct 1173 GTGAACATCGGGTCGATGTCGGCGGGAGCTAAGGTTCTAGGAGTGAAGAAAGATATGATG 1232
Query 1369 AAACTCCAACTGACG-TCTCCGGTGTGTACCACCATAGGAGAGAAGGTTGCTTTAAGCCG 1427
||| | ||||||||| | || || || |||| ||||||||||||||| ||| |||||||
Sbjct 1233 AAAGTGCAACTGACGGTG-CCTGTCTGCACCAACATAGGAGAGAAGGTGGCTCTAAGCCG 1291
Query 1428 ACGTGTCGATAGGCATTGGCGTCTA-ATTGGTAAG-GGTCAGATT-ATGGCTGGAACCAC 1484
|||||||| ||||||||||| || |||||| | ||||||||| | ||||||||||||
Sbjct 1292 CCGTGTCGACAGGCATTGGCG-CTTGATTGGTC-GTGGTCAGATTGA-GGCTGGAACCAC 1348
Query 1485 CAT-CGATGTTCCTCCTCCTCCT 1506
| | | || ||||||||||||
Sbjct 1349 CGTTCCC-GTCCCTCCTCCTCCT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62201370085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5