BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18335.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493032 jgi|Araly1|493032|fgenesh2_kg.7__2465__AT4G18335.1         678    0.0  


> Ahg493032 jgi|Araly1|493032|fgenesh2_kg.7__2465__AT4G18335.1
Length=480

 Score =  678 bits (367),  Expect = 0.0
 Identities = 458/498 (92%), Gaps = 21/498 (4%)
 Strand=Plus/Plus

Query  1    ATGGAAGATTTGGTTTTGATGAAACAGAGTCTTCTAAAAAGcttcatcgtctctcttatt  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATGATTTGGTTTTGATGAAACAGAGTCTTCTAAAAAGCTTCATCGTCTCTCTTATT  60

Query  61   ctcactctcgtcttcctcatctcaccatcatcatcatcttcgaatcaAGAAACAAGAGTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTCACTCTCGTCTTCCTCATCTCACCATCATCATCATCTTCGAATCAAGAAACAAGAGTA  120

Query  121  TCATCAACACAAAAAACGGAAGCTTATCTCAACGGTTACGAATCACCGCACCAACTCGTC  180
            |||||||||||||| ||||||||||||||||||||  | |||||||||||||||||||| 
Sbjct  121  TCATCAACACAAAAGACGGAAGCTTATCTCAACGGCAATGAATCACCGCACCAACTCGTG  180

Query  181  TACATCAAGAAAACGACACCGTTTATCTTGAACCAGCGGTTGCAACGAGAC-A--ACCAC  237
            ||||||||||||||||| |||||||||||||||| ||||||||||||| || |  |||||
Sbjct  181  TACATCAAGAAAACGACGCCGTTTATCTTGAACCGGCGGTTGCAACGAAACCACCACCAC  240

Query  238  CGTCGTCGTCGTTACAATCACCAATACTACTACTACTATCGACATACTCTTCGTCATCGC  297
            ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||   ||
Sbjct  241  CGTCGTCGTCGTTACGATCACCACTACTACTTCTACTATCGACATACTCTTCGTC---GC  297

Query  298  CGTGGTCTTCATCATCGTGCTGGCTACTTCAAGATGATGGCCAAGAAGAATAACGGTTTA  357
            ||||  ||  | | |          |||||||||||||||||||||||| ||||||||||
Sbjct  298  CGTG--CTG-A-C-T----------ACTTCAAGATGATGGCCAAGAAGAGTAACGGTTTA  342

Query  358  AACCGTCCGGTTCGACAGGATACTTTCTCGGTTATGCTTCCCAAAGGATTCGTACCTCCT  417
            |||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct  343  AACCGTCCGGTTCGACCGGATACTTTCTCCGTTATGCTTCCCAAAGGATTTGTACCTCCT  402

Query  418  TCCGGTTCATCTCCATGCCATAACCAGAACCCTAATTCCGCTACTACTCTCTTTTGCGAT  477
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  403  TCCGGTTCATCTCCATGCCATAACCAGAACCCTAATTCTGCTACCACTCTCTTTTGCGAT  462

Query  478  CTTTCTACACAACCCTAG  495
            ||||||||||||||||||
Sbjct  463  CTTTCTACACAACCCTAG  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5