BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18340.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493031 jgi|Araly1|493031|fgenesh2_kg.7__2464__AT4G18340.1 2056 0.0
> Ahg493031 jgi|Araly1|493031|fgenesh2_kg.7__2464__AT4G18340.1
Length=1381
Score = 2056 bits (1113), Expect = 0.0
Identities = 1231/1289 (96%), Gaps = 4/1289 (0%)
Strand=Plus/Plus
Query 14 TCTCTTTCC-CTCCCTCTCTCTTCCTCAACATGACATCAAGAACATTCACAAGACATTCC 72
|||| |||| ||| || ||||||||||||||||||| ||||||| |||||||||| ||||
Sbjct 1 TCTC-TTCCTCTCTCTTTCTCTTCCTCAACATGACACCAAGAACGTTCACAAGACTTTCC 59
Query 73 AGTCTCATTCATGTTTTTCTCCTGCTTTCTCTCGTTTTCTCAGGGAATATACTACAAACA 132
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 60 AATCTCATTCATATTTTTCTCCTGCTTTCTCTCGTTTTCTCAGGGAATATACTAGAAAGA 119
Query 133 GTAACGTCTCTTGGCATCAATTACGGACAAGTTGGGAACAATTTGCCTTCACCGGATAAA 192
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 120 GTAACGTCTCTTGGCATCAATTACGGACAAGTTGGGAATAATTTGCCTTCACCTGATAAA 179
Query 193 GTCATTAACCTCTTGAGATCTTTAAGGATCACAAAAACAAGAATTTACGACACTAACCCT 252
||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||
Sbjct 180 GTCATTAACCTCTTGAGATCTCTAAGGATTACAAAAACAAGAATCTACGACACTAATCCT 239
Query 253 CAAATCCTTAGTGCCTTTGCAAATTCAAACATCGAGATCATCGTCACCATCGAAAATCAG 312
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAATTCTTAGTGCCTTTGCAAATTCAAACATCGAGATCATCGTCACCATCGAAAATCAG 299
Query 313 GTTTTACCATTACTACAAGATCCTCAACAAGCTACCCAATGGGTAG-ATTCTCACATTAA 371
||||| |||||| ||||||||||||||||||||| ||||||||| | |||||| ||| |
Sbjct 300 GTTTTGCCATTATTACAAGATCCTCAACAAGCTATCCAATGGGT-GAATTCTCGCATCAG 358
Query 372 ACCCTATGTTCCGGCCACTAGGATTACCGGAATTATGGTCGGAAACGAGCTTTTCACCGA 431
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 ACCCTATGTTCCGGCCACTAGGATTACCGGAATCATGGTCGGAAACGAGCTTTTCACCGA 418
Query 432 CGACGACTCTAGTTTAATAGGATACATGATGCCGGCGATAATCAACATCCACAAAGCCTT 491
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 CGACGACTCTAGTTTGATAGGATACATGATGCCGGCGATGATCAACATCCACAAAGCCTT 478
Query 492 GGTCCAATTAGGTTTAGATAGATACATTCAAGTCTCGTCTCCAAGCTCTCTTGCCGTCCT 551
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 479 GGTTCAATTAGGTTTAGACAGATACATTCAAGTCTCGTCTCCGAGCTCTCTTGCCGTCCT 538
Query 552 CGGTGAATCTTATCCTCCATCTGCCGGAAGTTTCAAGCCGGAGGTTTCCTCCGTGATGCA 611
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 539 TGGTGAATCTTATCCTCCATCAGCCGGAAGTTTCAAGCCGGAGGTTTCCTCCGTCATGCA 598
Query 612 ACAACTTCTAGATTTCTTGGAAGCCACGAAATCTCCTTTTTGGATAAATGCTTACCCTTA 671
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 ACAACTTCTAGAATTCTTGGAAGCCACGAAATCTCCTTTTTGGATCAATGCTTACCCTTA 658
Query 672 CTTTGCCTACAAAGATAACCCACAAGAAATCCCAGTCGATTACGTTCTATTCAACCGTAA 731
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct 659 CTTTGCCTACAAAGATAACCCACAAGAAATCCCAATCGATTACGTTCTGTTCAATCGTAA 718
Query 732 CATCGGCATGACCGATCCCAACACAAGACTACACTACGACAACATGATGTATGCTCAAGT 791
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 719 CATCGGCATGACCGATCCCAACACGAGACTACACTACGACAACATGATGTACGCTCAAGT 778
Query 792 TGACGCAGTTGCTTTCGCGGCTGCGAAACTAGGGTACCGTAACATAGAAGTTAGGGTTGC 851
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 779 AGACGCAGTTGCTTTCGCGGCTGCTAAATTAGGGTACCGTAACATAGAAGTTAGGGTTGC 838
Query 852 GGAAACAGGGTGGCCTTCAAAAGGAGATGTCGGAGAGATTGGAGCGTCTCCTGTGAATGC 911
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 GGAAACAGGGTGGCCTTCAAAAGGAGATGTCGGAGAGATTGGAGCGTCTCCTTTGAATGC 898
Query 912 TGCCACGTATAACCGGAATCTTATGATGAGGCAATTCGCCGGAGAAGGAACTCCAGCGAG 971
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 899 TGCCACGTATAACCGGAATCTTATGATGAGGCAATTCGCCGGAGAAGGAACTCCGGCGAG 958
Query 972 ACGGAATGCAAGACTCGATGTTTATATATTTGCGTTGTTCAATGAAGATATGAAACCAGG 1031
|||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 959 ACGGAATGCAAGGCTAGATGTTTATATATTTGCATTGTTCAATGAGGATATGAAACCAGG 1018
Query 1032 TCCTACTTCGGAGAAAAACTACGGTATATTCCAACCAGATGGATCATTAGCTTACAATTT 1091
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1019 TCCTACTTCGGAGAAAAACTACGGTATATTCCGACCGGATGGATCATTAGCTTACAATTT 1078
Query 1092 GGGATTCTCTACAATGTCGACAACGACGGCAAATTCAGAATCTGTCACTTATTCATCCTC 1151
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 GGGATTCTCTACAATGTCGACAACGACGGCGAATTCAGAATCTGTCACTTATTCATCCTC 1138
Query 1152 TGCCACTAAGGCAAAGAGGAGCTTGGAGTATTGGACAATTTTGATATTGGCGATGGTTCA 1211
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1139 TGCCACTAAGGCAAAGAGGAGCTTGGAATATTGGACAATTTTGATATTGGCGATGGTTCA 1198
Query 1212 AGTTGTAATGTTGAGACTATTTTAGAGGAAAAGTTATTGACAATATAATAACGCGATTGT 1271
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1199 AGTTGTAATGTTGAGACTATTTTAGAGGGAAAGTTATTGAGAATATAATAACGCGATTGG 1258
Query 1272 TTAGGATATTTATGTAAACAATTTAATTA 1300
|||||||||||||||||||||||||||||
Sbjct 1259 TTAGGATATTTATGTAAACAATTTAATTA 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5