BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18350.1
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493030 jgi|Araly1|493030|fgenesh2_kg.7__2463__AT4G18350.1 2667 0.0
Ahg924299 jgi|Araly1|924299|scaffold_105580.1 355 6e-97
> Ahg493030 jgi|Araly1|493030|fgenesh2_kg.7__2463__AT4G18350.1
Length=1782
Score = 2667 bits (1444), Expect = 0.0
Identities = 1675/1788 (94%), Gaps = 9/1788 (1%)
Strand=Plus/Plus
Query 11 AAAACAAAAGCCATGGTTTCTCTTCTTACAATGCCGATGAGTGGTGGTATTAAAACATGG 70
|||||||||||||||| |||||||||| ||||| |||| || |||||| ||||||||||
Sbjct 1 AAAACAAAAGCCATGGCTTCTCTTCTTGCAATGTCGAT--GT-GTGGTACTAAAACATGG 57
Query 71 CCTCAAGCCCAAATTGATTTGGGTTTTAGGCCCATTAAAAGACAACCGAAGGTTATTAAA 130
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 58 CCTCAAGCCCAAATTGATTTGGGTTTTAGGCCCATTAAAAGACAGCCGAAGATTATTAAA 117
Query 131 TGCACGGTGCAGATCGACGTAACGGAATTAAC-CAAAAAACGCCAATTATTTACACCCAG 189
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 118 TGCACGGTGCAGATCGACGTTACGGAATTAACTC-AAAAACGCCAATTATTTACACCCAG 176
Query 190 AACCACCGCTACTCCGCCGCAGCATAATCCTCTCCGGCTAAACATCTTCCAGAAAGCGGC 249
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 177 AATCACCGCTACTCCGCCGCAGCATAATTCTCTCCGGCTAAACATCTTCCAGAAAGCGGC 236
Query 250 GGCGATTGCGATCGACGCGGCTGAGCGTGCATTAATCTCACACGAGCAAGATTCTCCACT 309
||| ||||||||||||||||||||||| || || ||||||| ||||||||| |||| ||
Sbjct 237 GGCTATTGCGATCGACGCGGCTGAGCGGGCGTTGATCTCACGTGAGCAAGATACTCCTCT 296
Query 310 TCCCAAAACCGCTGATCCACGTGTTCAGATTGCCGGGAATTATTCCCCGGTACCGGAATC 369
|||||||||||| ||||||||| ||||||| || ||||||||||| ||||| ||||||||
Sbjct 297 TCCCAAAACCGCCGATCCACGTATTCAGATCGCTGGGAATTATTCTCCGGTGCCGGAATC 356
Query 370 TTCCGTCCGGCGAAACCTCACCGTCGAAGGAACAATCCCTGACTGCATTGACGGTGTTTA 429
| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 TCCCGTCCGGCGAAATCTCACCGTCGAAGGAACAATCCCTGACTGCATTGACGGAGTTTA 416
Query 430 TATCCGTAACGGCGCGAATCCGATGTTTGAGCCAACAGCTGGGCACCATTTATTCGACGG 489
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TATCCGTAACGGCGCTAATCCGATGTTTGAGCCAACAGCTGGGCACCATTTATTCGACGG 476
Query 490 AGACGGAATGGTTCACGCAGTTAAAATAACCAACGGTTCAGCTAGCTACGCATGCCGGTT 549
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 AGACGGAATGGTTCACGCTGTTAAAATAACCAACGGTTCAGCTAGCTACGCGTGCCGGTT 536
Query 550 TACAAAAACCGAGAGATTGGTTCAGGAAAAACGATTGGGTCGACCAGTTTTCCCGAAAGC 609
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 537 TACAAAAACCGAGAGATTGGTTCAAGAAAAACGATTGGGTCGACCGGTTTTCCCGAAAGC 596
Query 610 AATCGGCGAGCTTCACGGTCACTCGGGAATCGCACGTTTGATGCTGTTTTACGCACGTGG 669
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AATCGGTGAGCTTCACGGCCACTCGGGAATCGCACGTTTGATGCTGTTTTACGCACGTGG 656
Query 670 GCTTTGTGGTCTGATCAACAACCAAAACGGCGTCGGAGTAGCAAACGCCGGTTTGGTTTA 729
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 657 GCTTTGTGGTCTCATCAACAACCAAAACGGCGTCGGAGTAGCAAATGCCGGTTTGGTTTA 716
Query 730 CTTT-AATAACCGGCTTTTAGCTATGTCAGAAGACGATTTACCGTACCAATTAAAAATTA 788
||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 717 -TTTCAATAATCGGCTTTTAGCTATGTCGGAAGACGATTTTCCGTACCAATTAAAAATAA 775
Query 789 CTCAAACCGGCGATCTCCAAACCGTTGGACGTTACGATTTCGACGGTCAGTTAAAATCCG 848
| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 776 CACAAACCGGTGATCTCCAAACCGTTGGACGTTACGATTTCGACAATCAGTTAAAATCCG 835
Query 849 CAATGATAGCTCACCCGAAACTGGACCCGGTTACGAAGGAGCTTCACGCGTTAAGCTACG 908
| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 836 CGATGATTGCCCACCCGAAACTCGACCCGGTTACGAAGGAGCTTCACGCGTTAAGCTACG 895
Query 909 ACGTCGTTAAGAAACCTTACCTGAAATACTTCAGATTCTCGCCAGACGGCGTTAAATCGC 968
||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 896 ACGTCGTTAAGAAGCCTTACCTGAAATACTTCAGATTTTCACCGGACGGCGTTAAATCGC 955
Query 969 CGGAATTGGAGATCCCGCTCGAAACTCCGACGATGATTCACGATTTCGCTATAACGGAGA 1028
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 CGGAATTGGAGATCCCGCTCGAAACTCCGACGATGATTCACGATTTTGCTATAACGGAGA 1015
Query 1029 ATTTTGTGGTGATTCCTGATCAACAAGTCGTGTTCAAGCTCGGCGAGATGATTTCCGGTA 1088
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1016 ATTTCGTGGTGATTCCGGATCAACAAGTCGTGTTTAAGCTCGGCGAGATGATTTCCGGTA 1075
Query 1089 AATCTCCGGTTGTTTTCGACGGAGAAAAGGTTTCCCGATTGGGGATAATGCCCAAGGACG 1148
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1076 AATCTCCGGTGGTTTTCGACGGAGAAAAGGTTTCGCGATTAGGGATAATGCCCAAGGACG 1135
Query 1149 CGACAGAAGCTTCTCAGATAATCTGGGTGAACTCTCCGGAGACGTTCTGTTTTCATCTCT 1208
| || |||| ||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1136 CAACGGAAGTTTCTCAGATAATCTGGGTGAATTCGCCGGAGACGTTCTGCTTTCATCTCT 1195
Query 1209 GGAATGCATGGGAATCGCCGGAGACGGAGGAGATTGTGGTGATCGGATCGTGTATGTCGC 1268
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1196 GGAACGCATGGGAATCGCCGGAGACGGAGGAGATTGTGGTGATCGGATCATGTATGACGC 1255
Query 1269 CGGCGGATTCAATCTTCAACGAGAGAGACGAGAGCTTGAGAAGCGTTTTGTCGGAGATCA 1328
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1256 CGGCGGATTCAATCTTCAACGAGAGAGACGAGAGCTTGAGAAGCGTCTTATCAGAGATCA 1315
Query 1329 GGATAAACCTCAGAACACGTAAAACCACGCGTCGTTCGTTGTTGGTTAACGAGGATGTAA 1388
||||||||||||| || ||| || ||||||| ||| | |||||||||||||||||||| |
Sbjct 1316 GGATAAACCTCAGGACGCGTGAATCCACGCGCCGTGCATTGTTGGTTAACGAGGATGTTA 1375
Query 1389 ATTTAGAGATTGGTATGGTTAACCGGAACCGGTTAGGAAGAAAAACCCGGTTCGCGTTTT 1448
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1376 ATTTAGAGATCGGTATGGTTAACCGGAACCGGTTAGGGAGAAAAACCCGGTTCGCGTTTT 1435
Query 1449 TGGCTATTGCTTATCCTTGGCCAAAAGTTTCCGGTTTCGCTAAGGTCGATCTTTGCACCG 1508
||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1436 TGGCTATTGCTGATCCGTGGCCAAAAGTTTCGGGTTTCGCTAAGGTCGATCTTTGCACCG 1495
Query 1509 GTGAGATGAAAAAATATATTTACGGCGGTGAGAAATATGGCGGCGAACCGTTTTTCTTGC 1568
||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1496 GTGAGATGAAAAAGTATATCTACGGCGGCGAGAAATACGGCGGCGAACCGTTTTTCTTGC 1555
Query 1569 CCGGCAACT-CCGGTAACGGCGAAGAAAATGAAGATGACGGTTATATATTTTGTCACGTT 1627
| || || | |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1556 CTGG-AAGTTCCGGTAACGGCGAAGAAAATGAAGATGACGGTTATATATTCTGTCATGTT 1614
Query 1628 CATGACGAAGAAACAAAGACATCAGAGCTTCAGATTATTAACGCTGTTAATTTAAAGCTT 1687
||||||||||||| |||||| || || |||||||||||||| || ||||||||||| |||
Sbjct 1615 CATGACGAAGAAAAAAAGACGTCGGAACTTCAGATTATTAATGCCGTTAATTTAAATCTT 1674
Query 1688 GAAGCTACGATTAAACTACCGTCTAGAGTACCGTATGGGTTTCATGGCACATTTGTGGAT 1747
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1675 GAAGCTACGATCAAACTACCGTCAAGAGTACCGTATGGGTTTCATGGCACATTTGTCGAT 1734
Query 1748 TCGAATGAACTCGTTGATCAATTATAATAATTATTGTACTTTTTAATG 1795
|||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1735 TCGAGTGAACTCGTTGATCAATTATGATAATTATTGTACTTTTGAATG 1782
> Ahg924299 jgi|Araly1|924299|scaffold_105580.1
Length=298
Score = 355 bits (192), Expect = 6e-97
Identities = 259/292 (89%), Gaps = 2/292 (1%)
Strand=Plus/Plus
Query 1390 TTTAGAGATTGGTATGGTTAACCGGAACCGGTTAGGAAGAAAAACCCGGTTCGCGTTTTT 1449
||||||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||
Sbjct 8 TTTAGAGATCGGTATGGTTAACCGGAACCAGTTAGGGAGAAACCCCCGGTTTGCGTTTTT 67
Query 1450 GGCTATTGCTTATCCTTGGCCAAAAGTTTCCGGTTTCGCTAAGGTCGATCTTTGCACCGG 1509
|||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 68 GGCTATCGCTGATCCTTGGCCAAAAGTTTCCGGTTTCGCTAAGGTCTATCTTTCCACCGG 127
Query 1510 TGAGATGAAAAAATATATTTACGGCGGTGAGAAATATGGCGGCGAACCGTTTTTCTTGCC 1569
|||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 128 TGAGGTGAAAAAGTATCTTTACGGCGGCGAGAAATATGGCGGCGAACCTTTTTTCTTACC 187
Query 1570 CGGCAA-CTCCGGTAACGGCGAAGAAAATGAAGATGACGGTTATATATTTTGTCACGTTC 1628
|| || ||| ||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 188 TGG-AAGCTCTGGTAACGACGAAGAAAATGAAGATGAAGGTTATATATTCTGTCACGTTT 246
Query 1629 ATGACGAAGAAACAAAGACATCAGAGCTTCAGATTATTAACGCTGTTAATTT 1680
||||| |||||||||||| | ||||||| ||||| ||||| | |||||||
Sbjct 247 ATGACAAAGAAACAAAGATGTTAGAGCTTTAGATTGTTAACACCATTAATTT 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419733650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5