BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18372.1

Length=644
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946364 jgi|Araly1|946364|scaffold_702593.1                        575    1e-163


> Ahg946364 jgi|Araly1|946364|scaffold_702593.1
Length=380

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 357/380 (94%), Gaps = 0/380 (0%)
 Strand=Plus/Plus

Query  53   ATAAAAAGCCTGTTGTGGGAATGGAACAAGCTGCAGAGAGGAGTTCAACCATTGTTGCAT  112
            |||| |||| |||||| ||||||||||||||||||||||| || |||||| |||||||||
Sbjct  1    ATAAGAAGCTTGTTGTTGGAATGGAACAAGCTGCAGAGAGAAGCTCAACCCTTGTTGCAT  60

Query  113  CCACCTCTGAAGGGTCGGATTTTGATCCGATATCTCGATTGAGGAAGCTCTTGTTCCGCC  172
            | ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct  61   CAACCTCTGGAGGGTCGGATTTAGATCCGATATCTCGAGTGAGGAAGCTCTTGTTCCGCC  120

Query  173  AAATGCTTGTGGGAATCAAAGACGGCAGATTCTTCCTTGGAAATTTCCATTGCATTGACA  232
            | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  121  AGATGCTTGTGGGAATCAAAGACGGGAGATTCTTCCTGGGAAATTTCCATTGCATTGACA  180

Query  233  AACAAGGAAACATCATTCTCCAAGACACTGTGGAGTATCGTAGCATACGAAGATCATCTC  292
            |||||||||||||||||||||| || ||||| ||||||||||||||| ||||||| ||||
Sbjct  181  AACAAGGAAACATCATTCTCCAGGATACTGTCGAGTATCGTAGCATAAGAAGATCGTCTC  240

Query  293  CTTCGCCTACTGAACAGCGTTGTCTTGGTATGATCCTAATCCCTTCCTCTTGCAGGACAT  352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTTCGCCTACTGAACAGCGTTGTCTTGGTATGATCCTAATCCCTTCCTCTTGCAGGACAT  300

Query  353  CTTGCCATGTTGATTGCTCTATCGATGAACAGCTTTCGTTGATTCAGCTGAAAGAGTAGA  412
            |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| 
Sbjct  301  CTTGCCATGTCGATTGCTCTATCGAGGAACAGCTTTCATTGATTCAGCTGAAAGAGTAGT  360

Query  413  GCTTCTTTTAAGACTTCATG  432
            || |||||||||||||||||
Sbjct  361  GCCTCTTTTAAGACTTCATG  380



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23598085623


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5