BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18375.2
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493025 jgi|Araly1|493025|fgenesh2_kg.7__2458__AT4G18375.2 2704 0.0
Ahg494355 jgi|Araly1|494355|fgenesh2_kg.8__171__AT5G46190.1 673 0.0
> Ahg493025 jgi|Araly1|493025|fgenesh2_kg.7__2458__AT4G18375.2
Length=1828
Score = 2704 bits (1464), Expect = 0.0
Identities = 1722/1843 (93%), Gaps = 31/1843 (2%)
Strand=Plus/Plus
Query 91 TAACAATGGTAGAACGCAAGAAACGGAAACAGATTCAGAGAAACAACAGTGAGAGCAACA 150
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 3 TAACAATGGTAGAACGCAAGAAACGGAAACAGAATCAGAGAAACAACAATGAGAGCAACC 62
Query 151 GGAATCAAAAGAGACGAATTTC--A-CA---TGATAAGATTAATAGAGATGAGCTTGTAG 204
|||||||||||||||||||||| | | ||| ||||| ||||||||||||||||| |
Sbjct 63 GGAATCAAAAGAGACGAATTTCAAATAATGGTGAAAAGATCAATAGAGATGAGCTTGT-G 121
Query 205 -TTTACAGAATCTTATGTCCTATTGATGTTGTTGGAGGTGTTATAGGTAAAAGTGGTAAA 263
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 122 ATTTACAGAATCTTATGTCCTATTGATGTTGTTGGAGGTGTTATAGGCAAGAGTGGTAAA 181
Query 264 GTCATCAACGCCATTAGGCATAACACAAAAGCCAAGATCAAAGTATTTGATCAGTTACAT 323
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 182 GTCATCAATGCCATTAGGCATAACACGAAAGCCAAGATCAAAGTTTTTGATCAGTTACAT 241
Query 324 GGTTGCAGCCAAAGAGTCATAACAATCTATTGCTCTGTTAAAGAG---AAACAAGAAGAA 380
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||
Sbjct 242 GGTTGCAGCCAAAGAGTCATAACAATCTATTGCTCGGTTAAAGAGAAAAAAGAAGAAGAA 301
Query 381 ATCGGTTTTACGAAGAGCGAAAACGAGCCTCTTTGTTGTGCACAAGATGCTCTTCTTAAA 440
|||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 302 ATCGATTTTATGAAGAGCGAAACCGAGCCTCTTTGTTGTGCGCAAGATGCTCTTCTTAAA 361
Query 441 GTCTATGATGCAATTGTAGCTAGTGATGAAGAGAACAACACTAAGACTAATGTAGATAGA 500
|| |||||||||||||||||||||||||||||| |||| |||| | ||||||||
Sbjct 362 GTTTATGATGCAATTGTAGCTAGTGATGAAGAG---AACATTAAG----A--TAGATAGA 412
Query 501 GATGATAACAAGGAATGCCGTCTTTTAGTTCCGTTTAGTCAATCTTCTAGTTTGATTGGT 560
|||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 413 GATGATAAGAAGGAATGCCGTCTTTTAGTTCCGTCTAGTCAATCTTTTAGTTTGATTGGT 472
Query 561 AAGGCTGGTGAGAACATTAAGAGGATAAGACGTAGAACTAGAGCTAGTGTTAAGGTTGTT 620
|||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct 473 AAGGCTGGTGAGAACATTAAGAGGATAAGAAGTACAACTCGAGCTAGTGTTAAGGTTGTT 532
Query 621 TCGAAAGATGTTTCGGATCCTTCACATGTTTGTGCCATGGAATATGACAATGTAGTTGTG 680
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 533 TCGAAAGATGTTTCGGATCCTTCACATGTTTGTGCCATGGATTATGACAATATAGTTGTG 592
Query 681 ATATCTGGTGAGCCTGAATCCGTGAAGCAAGCGCTTTTTGCTGTTTCTGCAATCATGTAC 740
||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 593 ATATCTGGTGAGCCTGAATCCGTGAAGAAAGCGCTTTTCGCTGTTTCTGCAATCCTGTAC 652
Query 741 AAGATCAATCCTCGTGAAAATATTCCTCTAGATTCAACCAGCCAAGATGTTCCAGCAGCT 800
|||||||||||||| ||| |||||||||||||||||||| ||||||||||| | |||||
Sbjct 653 AAGATCAATCCTCGAGAACATATTCCTCTAGATTCAACCGGCCAAGATGTT-C--CAGCT 709
Query 801 AGTGTTATAGTTCCATCAGATCTTTCTAATTCTGTCTATCCTCAAACGGGATTTTACTCG 860
||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 710 AGTATTATAGTTTCATCAGATCTTTCTAATTCTGTCTATCCTCAAACTGGATTTTACTCA 769
Query 861 AATCAAGATCATATTCTTCAGCAAGGGGCGGGTGTTCCGTCATATTTCAATGCACTATCT 920
|| || |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 770 AACCAGGATCATATTCTTCAGCAACGAGCGGGTGTTCCGTCATATTTCAATGCACTATCT 829
Query 921 GTATCTGACTTTCAAGGTTACGCAGAAACCGCTGCGAATCCAGTGCCTGTTTTTGCTTCT 980
|||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 830 GTATTTAACTTTCAAGGTTATGCAGAAACCGCTGCGAATCCAATGCCTGTTTTTGCTTCT 889
Query 981 TCTCTCCCAGTGACTCATGGTTTTGGTGGGTCTTCCAGATCAGAAGAGCTGGTTTTTAAA 1040
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 890 TCTCTCCCAGTGACTCATGGTTTTGGTGGGTCTTCCAGGTCAGAAGAGCTGGTTTTAAAA 949
Query 1041 GTCTTGTGCCCTTTGTGCAATATTA-TGCGTGTAATCGGGAAAGGAGGATCAACCATTAA 1099
|| ||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||
Sbjct 950 GTGTTGTGCCCTTTGTCCAATATTACT-CGTGTAATCGGGAAAGGAGGGTCAACCATTAA 1008
Query 1100 AAGAATAAGAGAAGCAAGCGGTTCTTGTATTGAGGTTAATGACTCGAGAACAAAGTGTGG 1159
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1009 AAGAATAAGAGAAGCTAGCGGTTCTTGTATTGAGGTTAATGACTCAAGAACAAAGTGTGG 1068
Query 1160 TGATGATGAGTGTGTTATCATTGTCACTGCTACAGAGTCTCCTGATGATATGAAGTCTAT 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TGATGATGAGTGTGTTATCATTGTCACTGCTACAGAGTCTCCTGATGATATGAAGTCTAT 1128
Query 1220 GGCTGTTGAAGCTGTTCTTCTTCTGCAAGAGTATATCAACGATGAGGATGCGGAAAATGT 1279
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1129 GGCTGTTGAAGCTGTTCTTCTTCTGCAAGAGTATATCAACGATGAGAATGCGGAAAAAGT 1188
Query 1280 TAAGATGCAACTTCTTGTTTCTTCTAAGGTTATTGGATGCGTTATAGGGAAGAGTGGCTC 1339
||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1189 TAAGATGCAACTTCTTGTTTCTTCTAAGGATATTGGATGTGTTATAGGGAAAAGTGGCTC 1248
Query 1340 AGTCATAAACGAAATCAGGAAAAGAACCAATGCTAATATCTGTATCTCGAAAGGGAAAAA 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AGTCATAAACGAAATCAGGAAAAGAACCAATGCTAATATCTGTATCTCGAAAGGGAAAAA 1308
Query 1400 GGATGACCTTGTTGAGGTATCAGGTGAAGTCAGTAGTGTGAGAGACGCTCTCATTCAGAT 1459
||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||
Sbjct 1309 GGATGACCTTGTTGAGGTAGCGGGTGAAATCAGCAGTGTGAGAGACGCTCTCATTCAGAT 1368
Query 1460 CGTTCTAAGACTTCGAGAGGATGTTTTAGGAGACAAAGATAGTGTTGCTACTAG--G-AA 1516
||||||||||||||||||||||||||||||||| | ||||| |||||||||||| | ||
Sbjct 1369 CGTTCTAAGACTTCGAGAGGATGTTTTAGGAGATAGAGATATTGTTGCTACTAGTAGGAA 1428
Query 1517 ACCTCCTGCAAGAACTGATAACTGTAGTTTCTTATCGGGTAGTAGTAATGCCGGTTATAC 1576
||||||||||||||||||||| | |||||| || ||||||||||||||||||||||||||
Sbjct 1429 ACCTCCTGCAAGAACTGATAATTATAGTTTATTCTCGGGTAGTAGTAATGCCGGTTATAC 1488
Query 1577 ACTTCCATCGTTCATGTCTTCAATGGCTTCTACAAGCGGATTCCATGGTTATGGAAGCTT 1636
|||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 1489 ACTTCCGTCGTTCATGTCTTC---GGCTTCTTCAAGCGGTTTCCATGGTTATGGAAGCTT 1545
Query 1637 TCCGGCAGGAGATAATGTTTTGGGATCAACCGGTCCATACTCATATGGACGTTTGCCTTC 1696
||||||||||||||| ||||| |||||| | |||||||||||| |||||| ||||||||
Sbjct 1546 TCCGGCAGGAGATAACGTTTTTGGATCAGTCAGTCCATACTCATTTGGACGATTGCCTTC 1605
Query 1697 ATCTTCTGCTCTGGAGATTCTAATCCCGGCGCATGCAATGAGTAAAGTTATGGGAAAAGG 1756
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 1606 ATCTTCTGCTCTGGAGATTCTAATCCCGGCAAATGCAGTGAGTAAAGTTATGGGCAAAGG 1665
Query 1757 AGGAGGCAATTTGGAAAACATAAGAAGGATATCGGGAGCGATGATAGAAATATCTGCTTC 1816
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1666 AGGAAGCAATTTGGAAAACATAAGAAGGATATCGGGAGCAATGATAGAAATATCCGATTC 1725
Query 1817 CAAAACGTCACATGGTGATCACATTGCTCTCTTATCCGGCACACTTGAACAGATGCGTTG 1876
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1726 CAAAACGTCACAGGGTGATCACATTGCTCTCCTATCCGGCACACTTGAACAGATGCGTTG 1785
Query 1877 TGCAGAGAACTTGGTCCAAGCTTTTGTTATGTCCACTTGaaaa 1919
|||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1786 TGCAGAGAACTTAGTCCAAGCTTTTATTATGTCCACTTGAAAA 1828
> Ahg494355 jgi|Araly1|494355|fgenesh2_kg.8__171__AT5G46190.1
Length=2363
Score = 673 bits (364), Expect = 0.0
Identities = 1131/1479 (76%), Gaps = 142/1479 (10%)
Strand=Plus/Plus
Query 199 TTGTAGTTTACAGAATCTTATGTCCTA-TTGATGTTGTTGGAGGTGTTATAGGTAAAAGT 257
|||| | ||||||||||||||| |||| | || || | ||| |||||||||| ||||||
Sbjct 237 TTGTTGCTTACAGAATCTTATGCCCTAGTGGA-GTCATGGGAAGTGTTATAGGCAAAAGT 295
Query 258 GGTAAAGTCATCAACGCCATTAGGC-ATAACACAAAAGCCAAG-ATCAAAGTAT-TTGAT 314
|| ||||| || ||| ||||||| | || || | || | || |||||||| | |||||
Sbjct 296 GGCAAAGTTATTAACTTGATTAGGCAAGAA-ACTAGAG-CTAGAATCAAAGT-TGTTGAT 352
Query 315 -CAGTTACATGGTTGCAGCCAAAGAGTCATAACAATCTATTGCTCTGTTAAAGAGAA-AC 372
| || || ||||| ||| ||||||||||||| |||| |||||| |||| ||||| |
Sbjct 353 CCTTTTCCA-GGTTGTAGCGAAAGAGTCATAACGATCTTTTGCTCGGTTACGGAGAAGA- 410
Query 373 AAGAAGA-AATCG-GTTTTACGAAGAGCG-A---AA--A--CGA-GCCTCTT-TGTTGTG 420
||| | | ||| || | ||| |||| | || | | | ||| || |||| ||
Sbjct 411 AAG-ACATTGTCGACATTGA-GAATAGCGAATTGAATTACTCAATTCCT-TTGTGTTCTG 467
Query 421 CACAAGATGCTCTTCTTAAAGTCTATGATGCAATTGTAG---C--TAG-TGA-TGAAG-A 472
| ||||||||||||||||||||| ||||||| ||||| | | ||| | | || |
Sbjct 468 CTCAAGATGCTCTTCTTAAAGTCCATGATGCTATTGTGGCTTCTTTAGCT-ACTGCTGCT 526
Query 473 GAACAACACTAAGACTAATGTAGATAGAGATGATAACAAG-GAATGCCGTCTTTTAGTTC 531
| | ||||||||| || | |||||||||||| | || ||||| || ||||||||||
Sbjct 527 G-AGAACACTAAG----AT-T-GATAGAGATGAT-ATTAGAGAATGTCGCCTTTTAGTTC 578
Query 532 CGTTTAGTCAATCTTCTAGTTTGATTGGTAAGGCTGGTGAGAACATTAAGAGGA-TAAGA 590
||| |||||||| ||||| | | |||||||| | ||| | ||||||| || || ||
Sbjct 579 CGTCTAGTCAATGTTCTAATGTCATTGGTAAATCCGGTTCTATTATTAAGAAGATTAGGA 638
Query 591 CGTAGAACTAGAGCTAGTGTTAAGGTTGTTTCGAAAGATGTTTCGGATCCTTCACATGTT 650
||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
Sbjct 639 -GTAGAACTAGAGCTAACGTTAAGGTTGTCTCTAAAGATGTTTCGGATCCTTCACACACT 697
Query 651 TGTGCCATGGAATATGACAATGTAGTTGTGATATCTGGTGAGCCTGAATCCGTGAAGCAA 710
||||| ||||| | |||||| | ||| |||| || |||||| |||||||||||||| ||
Sbjct 698 TGTGCTATGGATTTTGACAACATTGTTCTGATGTCCGGTGAGTCTGAATCCGTGAAG-AA 756
Query 711 -GCGCTTTTTGCTGTTTCTGCAATCATGTAC-AAGATCAATCCTCGTGAAAATATTCCTC 768
|| ||||| ||||||||||||||||||||| ||| ||| |||||| ||| | |||||||
Sbjct 757 GGCACTTTTCGCTGTTTCTGCAATCATGTACAAAG-TCAGTCCTCGAGAACAGATTCCTC 815
Query 769 TAGATTCAACCAG-CCAAGATGTTCCAGCAGCTAGTGTTATAGTTCCATCAGATCTTTCT 827
| ||| ||| | | |||||| ||||| | ||||| ||||| |||| ||||| |||
Sbjct 816 TGGATACAA-CTGTCCAAGAAGTTCC--C-TCTAGTATTATAATTCCGTCAGA----TCT 867
Query 828 AATTCTGTCTATCCTCAAACGG-GATTT-TACTCGAATCAAGATCATATTCTT-CAGCAA 884
| ||| ||||||| | || || | ||| ||| | ||||| |||| |||| || || ||
Sbjct 868 -A-TCTATCTATCCAC-AA-GGCGGTTTATACCCAAATCAGGATCCTATT-TTCCAACAT 922
Query 885 GGGGCGGGTGTTCCGTCAT-ATTTCAATGCACTATCTGTATCTGACTTTCAAGGTTACGC 943
||||| |||| |||| ||| || | || | | || || ||| ||||| |
Sbjct 923 GGGGCCAATGTT---TCATCGTTT--AT-CGGTA-C---A-CT-AC-CTCAGGGTTATGG 969
Query 944 AGAAACCGCTGCGAATCCAGTGCC--TGTTTT-TGCTTCTTCTCTCCCAGTGACTCATGG 1000
|||| |||||| |||||| |||| | |||| ||||||| |||| || ||| ||||||
Sbjct 970 GGAAAACGCTGCAAATCCAATGCCGGTTTTTTCTGCTTCTGCTCTTCCTGTGGTTCATGG 1029
Query 1001 TTTTGGTGGGTCTTCCAGATCAGAAGAGCTGGTTTTTAAAGTC-TTGTGCCCTT-TGTGC 1058
||||||||||||||||||||||||| || ||||| | ||||| || ||| ||| | | |
Sbjct 1030 TTTTGGTGGGTCTTCCAGATCAGAAAAGTTGGTTATAAAAGTTATT-TGCTCTTCT-TCC 1087
Query 1059 AATATTATGC-GTGTAATCGGGAAAGGAGGATCAACCATTAAAAGAATAAGAGAAGCAAG 1117
|| || || |||| || ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1088 AAAATCG-GCCGTGTTATTGGGAAAGGAGGATCAACCATTAAGGGAATAAGACAAGCAAG 1146
Query 1118 CGGTTCTTGTATTGAGGTTAATGACTCGAGAACAAAGTGTGGTGATGATGAGTGTGTTAT 1177
||| ||| ||| ||||||||||||||||| |||| | ||||||||| ||||||||
Sbjct 1147 CGGGTCTCATATCGAGGTTAATGACTCGAGGGCAAA-TCA--TGATGATGACTGTGTTAT 1203
Query 1178 CATTGTCACTGCTACAGAGTCTCCTGATGATATGAAGTCTATGGCTGTTGAAGCTGTTCT 1237
|| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1204 CACTGTCACTGCTACAGAGTCTCCTGATGATTTGAAGTCTATGGCGGTTGAAGCTGTTCT 1263
Query 1238 TCTTCTGCAAGAGTATATCAACGATGAGGATGCGGAAAATGTTAAGATGCAACTTCTTGT 1297
||| || |||||| | || || ||||| || | |||||| ||||| ||||||||||||||
Sbjct 1264 TCTACTTCAAGAGAAAATTAATGATGAAGACGAGGAAAAAGTTAAAATGCAACTTCTTGT 1323
Query 1298 TTCTTCTAAGGTTATTGGATGCGTTATAGGGAAGAGTGGCTCAGTCATAAACGAAATCAG 1357
|||||||||| || |||||| |||||||||| ||||||||| |||||| ||||||||
Sbjct 1324 ACCTTCTAAGGTAATAGGATGCATTATAGGGAAAAGTGGCTCAATCATAAGTGAAATCAG 1383
Query 1358 GAAAAGAACCAATGCTAATAT-CTGTATCTCGAAAGGGA--AA-AAGG--A--TG----- 1404
|||||| || || || ||||| | ||||| ||||||| || ||| | ||
Sbjct 1384 GAAAAGGACAAAGGCCAATATTCAC-ATCTCAAAAGGGAGTAATAAGCCTAAGTGTGCCG 1442
Query 1405 A-CC---T--TG---T--T-GAGGTATCAGGTGAAGTCAGT-AGTGTGAGAGACGCTCTC 1451
| || | || | | ||| |||| |||||||| || | ||||||||| |||||
Sbjct 1443 ATCCCAATGATGAGCTCGTTGAGATATCGGGTGAAGTAAGCGA-TGTGAGAGATGCTCTT 1501
Query 1452 ATTCAGATCGTTCTAAGACTTCGAGAGGATGTTTTA-GGAGACAAAGATAGTG-TTGCTA 1509
|||||||| ||||| || |||||||| ||||| ||| || || | ||| | || || |
Sbjct 1502 ATTCAGATAGTTCTGAGGCTTCGAGATGATGTATTAAGG-GATAGAGAGATTGGTT-C-- 1557
Query 1510 CTAGGAA--A-CCTCCTGCAAGAACTGATAACTGT-AGTTTCTTATC---GGGTAGTAGT 1562
| ||||| | |||||||||||| |||| || | | |||||| || ||||||||||
Sbjct 1558 C-AGGAATCAACCTCCTGCAAGATCTGAGAA-TAACAATTTCTTCTCTTCGGGTAGTAGT 1615
Query 1563 AATGCCGGT-TATACACTTCC---ATCGTTCATGTCTTC 1597
||| | ||| | | ||||||| ||| |||||||||||
Sbjct 1616 AATACTGGTCT-TGCACTTCCTTCATCTTTCATGTCTTC 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5