BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18380.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946362 jgi|Araly1|946362|scaffold_702591.1 1716 0.0
Ahg494357 jgi|Araly1|494357|fgenesh2_kg.8__173__AT5G46170.1 715 0.0
Ahg890357 jgi|Araly1|890357|Al_scaffold_0007_2343 250 3e-65
Ahg915326 jgi|Araly1|915326|Al_scaffold_0008_77 178 1e-43
> Ahg946362 jgi|Araly1|946362|scaffold_702591.1
Length=1205
Score = 1716 bits (929), Expect = 0.0
Identities = 1111/1196 (93%), Gaps = 24/1196 (2%)
Strand=Plus/Plus
Query 63 tctcACCAATGGCGATAATTCTCCGTTCATCAGATCCACTCCTCTCACGAATCCATCCGG 122
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 13 TCTCATCAATGGCGATAATTCTCCGTTCATCAGATCCACTCCTCTCTCGAATCCATCCCC 72
Query 123 AACCACAAGAAATCGACCACTTCGATAACCTCCCAGACTCAATCCTCCTCCTCATCTTCA 182
|||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 73 AACCACAACAAATCGACCACTTCGATCACCTCCCTGACTCAATCCTCCTCCTCATCTTCA 132
Query 183 ACAACATCGGCGACGTCAAAGCCTTAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATT 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 ACAACATCGGCGATGTCAAAGCCTTAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATT 192
Query 243 CCTTAATCCCTCAAGTCGAAAATGTCTTCGTTCGTGTCGATTGCGTTATCTCCGACGACG 302
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 193 TCTTAATCCCTCAAGTCGAGAATGTCGTCGTTCGTGTCGATTGCGTTATCTCCGACGACG 252
Query 303 ATTCTTCCTCTCTCCTCTCCGATAAACCTCGATCCGCCTCCGCCGCTTCTCCTTTCTCCG 362
|||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||
Sbjct 253 ATTCTTCCTCTCTCCTCTCCGATAAACCTCGATCCGTCGCCGCTGCTACTCCTTTCTCCG 312
Query 363 CCATTTTCCGTCTCGTCTTCAAGCCGTTACAAGCTTTGGGACAGTTCCTTAAACGCTCAG 422
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CCATTTTCCGTCTCGTGTTTAAGCCGTTACAAGCTTTGGGACAGTTCCTTAAACGCTCAG 372
Query 423 GTTCTTCTTC-TCTTCCTTCAGGATCA---TCTCCTTCTTCGTTGTTGATTA---GTGGT 475
||||| |||| || ||||||||||||| |||||||||||||||||||||| |||||
Sbjct 373 GTTCTGCTTCTTC-TCCTTCAGGATCATCTTCTCCTTCTTCGTTGTTGATTAGTGGTGGT 431
Query 476 GGT---GATGATGGAGAGATTGAACAAGGAGGTGTAACGCATCATTCACCGACTCAGGTT 532
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 432 GGTGGAGATGATGGAGAGATTGAACAAGGAGGTGTGACGCATCATTCTCCGACTCAGGTT 491
Query 533 TTGAAAAACTTCGATGAGATTAAGTTTCTTAAAATCGAGCTTCCTAGTGGTGAATTAGGG 592
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 492 TTGAAAAACTTCGATGAGATTCGGTTTCTTCGTATCGAGCTTCCTAGTGGTGAATTAGGG 551
Query 593 ATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGTTCTACTCTCGAGAATTGT 652
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 552 ATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGTTCTACTCTTGAGAATTGT 611
Query 653 GTGATCCTCGGTGCTTCCTCTGTGATTCCGCCGACGAATTCGGATAAGAC-G--GAAGCG 709
||||| |||||||||||||||||||||||| ||||||||||||||| | | || |
Sbjct 612 GTGATTCTCGGTGCTTCCTCTGTGATTCCGGCGACGAATTCGGATACTTCCGTTGAT-CT 670
Query 710 -AGT--TCGGCTC--C-CG-TCGCGGCGGTGGAAGATAATGGAAGTATACCGGAATCGTT 762
||| | | | | || | |||| || ||| ||||||||||||||||||||||||||
Sbjct 671 TAGTAGTAGTAACAACGCGGTGGCGGTGGCGGAGGATAATGGAAGTATACCGGAATCGTT 730
Query 763 TTATACAAACGGAGGGCTTAAGCTACGTGTTGTATGGACTATAAGCTCTTTGATTGCTGC 822
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 731 TTATACAAACGGAGGGCTTAAGCTTCGTGTTGTATGGACAATTAGCTCTTTGATTGCTGC 790
Query 823 TTCCGCTAGACATTACTTGTTGCAACCGATTATAGCAGAGCATAAGACGCTTGATAGTTT 882
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 791 ATCTGCTAGACATTACTTGTTGCAGCCGATTATCGCAGAGCATAAGACGCTTGATAGTTT 850
Query 883 AGTGCTTACTGATGTTGATGGTCAAGGAGTTTTGTGTATGAATCGAGATCAGTTAGAGGA 942
||||||||||||||||||||| |||||||| |||||||||||| |||||||||| || ||
Sbjct 851 AGTGCTTACTGATGTTGATGGGCAAGGAGTGTTGTGTATGAATAGAGATCAGTTGGAAGA 910
Query 943 ATTGAGAGTGAAACCATTGTCAGCTTCTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTT 1002
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 ATTGAGGGTGAAACCATTGTCAGCTTCTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTT 970
Query 1003 GAATATGAGACTTTGGTATGCTCCTTCTTTGGAATTGCCTGATGGGACTGTGTTGAAGGG 1062
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 971 GAATATGAGACTTTGGTATGCTCCTACTTTGGAATTGCCTGATGGGACGGTGTTGAAAGG 1030
Query 1063 AGCTACGCTTGTGGCGATTAGGCCGAGTGAGTCGAAGAAGGAGGTGTGTGATGTGTCTTG 1122
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1031 AGCTACGCTTGTGGCGATTAGACCGAGCGAGTCGAAGAAGGAGGTGTGTGATGTGTCTTG 1090
Query 1123 GGTTTCTTCTGCGTTTGATGAGCCTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAG 1182
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1091 GGTTTCTTCTGCGTTTGATGAGTCTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAG 1150
Query 1183 GACTTATTGTCTTGAAATGAATTCGTTCTAAAGCTTG-ACGATTTCGCTAAGTCGG 1237
||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 1151 GACTTATTGTCTTGAAATGAATTCGTTCTAAAGCTTGGA-GATTTCGATAAGTCGG 1205
> Ahg494357 jgi|Araly1|494357|fgenesh2_kg.8__173__AT5G46170.1
Length=1644
Score = 715 bits (387), Expect = 0.0
Identities = 909/1148 (79%), Gaps = 87/1148 (8%)
Strand=Plus/Plus
Query 123 AACCACAAGAAATCGACCACTTCGATAACCTCCCAGACTCAATCCTCCTCCTCATCTTCA 182
|||| | |||||||||||| |||||| || || |||||||||||||||||| | ||||
Sbjct 156 AACC-CTAGAAATCGACCATTTCGATCGTCTGCCTGACTCAATCCTCCTCCTCGTTTTCA 214
Query 183 ACAACATCGGCGACGTCAAAGCCT-TAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCAT 241
|||| ||||| ||||| |||| || | || | |||| ||||| ||| ||||| |||
Sbjct 215 ACAAAATCGGTGACGTTAAAG-CTCTCGGAAGATGCTGTGTCGTTTCCCGGAGATTTCAT 273
Query 242 TCCT-TAATCCCTCAAGTCGAAAATGTC-TTCGTTCGTGTCGATTGCGTTATCTCCGACG 299
| || | | ||||||||||| || ||| || ||||||||||||||||| ||||||||||
Sbjct 274 T-CTCTCGTTCCTCAAGTCGATAACGTCGTT-GTTCGTGTCGATTGCGTAATCTCCGACG 331
Query 300 ACGATTCTTCCTCTCTCCTC-TCCGAT-AAACCTCGATCCGCCTCCGCCGCT-TCTCCTT 356
||||||| || ||| | || | | || ||| |||| |||| || ||||| | | |
Sbjct 332 ACGATTCGTCGTCT-TTATCAT-CTATCAAATCTCGCTCCGGTTCTTCCGCTGGAT-CGT 388
Query 357 TCTCCGCCAT-TTTC--C--G-T-CTCGT--C--T-TCAAGCCGTTACAAGCTTTGGGAC 404
|||| || || |||| | | | | || | | | ||||||||||||||||| || |
Sbjct 389 TCTCGGCTATATTTCGTCTTGTTGTTGGTGGCATTGTTAAGCCGTTACAAGCTTTAGGTC 448
Query 405 AGTTCCTT-AAACGCTCAG-GTTCTTCTTCTCTTCCTTCAGGATCATCTCCTTCTTCGTT 462
| |||||| ||| || | || || | | | ||| ||||| | | ||||||||||
Sbjct 449 AATTCCTTGGTACG--AAGAGATCATCATGTGGTGGTTCTGGATC-T-T-CTTCTTCGTT 503
Query 463 GT-TGATTAGTGGTGGTGATG-A--TGGAGAGATTGAACAAGGAGGTGTAACGCATCATT 518
|| | |||||||| | ||||| | ||||||||| |||||||| ||||| ||||||||||
Sbjct 504 GTCT-ATTAGTGGAGATGATGAAGGTGGAGAGATCGAACAAGGCGGTGTTACGCATCATT 562
Query 519 CACCGACTCAGGTTTTGAAAAACTTCGATGAGATTAAGTTTCTTA-AAATCGAGCTTCCT 577
| || || ||||||||||||||||||||||||||| ||| |||| || |||||||||
Sbjct 563 CTCCTACACAGGTTTTGAAAAACTTCGATGAGATT-CGTTACTTACGTATTGAGCTTCCT 621
Query 578 AGTGGTGAATTAGGGATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGTTCT 637
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 622 AGTGGTGAATTAGGGATTGATGATGGAGTTTTGTTGAAATGGAGAGCTGAATTTGGTTCA 681
Query 638 ACTCTCGAGAATTGTGTGATCCTCGGTGCTTCCTCTGTGATT---CCG---CCGA--CGA 689
||||| || ||||||||||| ||||||||||| || |||||| ||| |||| ||
Sbjct 682 ACTCTTGATAATTGTGTGATTCTCGGTGCTTCTTCGGTGATTCAACCGAATCCGATGAGA 741
Query 690 A-TTCGGAT-AAGAC--GG--A--AG--CGAGT--TCG--GC-TCCCG-TCGCGGCGGTG 733
| ||| | ||| | || | || | ||| | | || ||| | || |||| |
Sbjct 742 ATTTC---TCAAGCCGTGGACACTAGTAC-AGTCGTTGAAGCTTCCGGTTC-CGGCTCT- 795
Query 734 GAAGATAATGGAAGTATACCGGAATCGTTTTATACAAACGGAGGGCTT-AAGCTACGTGT 792
|| |||||||| |||||||||||||||||||| ||||||||| || || || | |||||
Sbjct 796 GATGATAATGGGAGTATACCGGAATCGTTTTACACAAACGGA-GGATTGAAATTGCGTGT 854
Query 793 TGTATGGACTATAAGCTCTTTGATTGCTGCTTCCGCTA-GACATTACTTGTTGCAACCGA 851
||||||||| || ||||||||||||||||| || || | ||||||||||||| || ||||
Sbjct 855 TGTATGGACAATTAGCTCTTTGATTGCTGCATCAGC-ACGACATTACTTGTTACAGCCGA 913
Query 852 TTATAGCAGAGCATAAGACGCTTGATAGTTTAGTGCTTACTGATGT-TGATGGTCAAGGA 910
| || || ||||||||||| |||||||||||||| || |||||| | |||||| |||||
Sbjct 914 TAATCGCGGAGCATAAGACACTTGATAGTTTAGTTCTCACTGAT-TCTGATGGGCAAGGT 972
Query 911 GT-TTTGTGTATGAATC-GAGATCAGTTAGAGGAATTGAGAGTGAAACCATT-GTCAGCT 967
|| || |||||||| | |||| ||| |||| || | |||||||||||||| | |||||
Sbjct 973 GTGCTT-TGTATGAA-CAGAGAGCAGCTAGAAGAGCTAAGAGTGAAACCATTAG-CAGCT 1029
Query 968 TCTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTTGAATATGAGACTTTGGTATGCTCCT 1027
|| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1030 TCATCCGCTTCGAAGAGGACACTTGTGCCTGCTTTGAATATGAGACTTTGGTATGCTCCA 1089
Query 1028 TCTTTGGAATTGCCTGATGGGACTGTGTTGAAGGGAGCTACGCTT-GTGGCGATTAGGCC 1086
| ||||||||||||||||| |||||||| || || || || || || ||||| || ||
Sbjct 1090 ACCTTGGAATTGCCTGATGGAACTGTGTTAAAAGGTGCGACT-TTAGTAGCGATAAGACC 1148
Query 1087 GAGTGAGTCGAAGAAGG-AGGTGTGTGATGTGTCTTGGGTTTCTTCTGCGTTT-GATGAG 1144
|| ||||| || |||| | |||| |||| | |||||||| ||||| || ||| || |||
Sbjct 1149 AAGCGAGTCTAA-AAGGGAAGTGTCTGATATCTCTTGGGTATCTTCGGC-TTTCGAGGAG 1206
Query 1145 CCTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAGGACTTATTGTCTTGAAATGAAT 1204
||||||| | |||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1207 CCTTATGAGACAGCTGCGAAGATGCTGGTTAAGAGAAGGACTTACTGTCTTGAAATGAAC 1266
Query 1205 TCGTTCTA 1212
||||||||
Sbjct 1267 TCGTTCTA 1274
> Ahg890357 jgi|Araly1|890357|Al_scaffold_0007_2343
Length=300
Score = 250 bits (135), Expect = 3e-65
Identities = 187/211 (89%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 1247 GAATGAATCACAAAGGCTAACCAGGTTTTGAAAGAGAGAGACTACAATGCAT-AAGATCA 1305
||||| ||||||||||||||||| |||||| || |||||||||||||||||| |||||||
Sbjct 1 GAATGGATCACAAAGGCTAACCATGTTTTG-AA-AGAGAGACTACAATGCATAAAGATCA 58
Query 1306 GTTTTGTATGCAGTGTGACTAATCTTAGATTCACCAATGGAGCTCAATTCTATGTGTTAT 1365
||||||||| ||||||||||||| ||||||||||||||| ||||||| |||| | || |
Sbjct 59 GTTTTGTATTAAGTGTGACTAATCCTAGATTCACCAATGGGGCTCAATGCTATCTATTCT 118
Query 1366 TGGTCTATTGGAAGGTTCGA-ATTCCGTCTGCTTGGTCATCGGAAACCGCATTCGCTGGC 1424
|||||||||||||| ||| | ||| ||||||||||| || ||||||||||||||||||||
Sbjct 119 TGGTCTATTGGAAGCTTC-ATATT-CGTCTGCTTGGACACCGGAAACCGCATTCGCTGGC 176
Query 1425 TGTTTTTTGT-TTT-AGCTGGCAAAGCAATC 1453
|||||||| | ||| |||| ||| |||||||
Sbjct 177 TGTTTTTTTTGTTTCAGCTCGCATAGCAATC 207
> Ahg915326 jgi|Araly1|915326|Al_scaffold_0008_77
Length=567
Score = 178 bits (96), Expect = 1e-43
Identities = 102/105 (97%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 147 ATAACCTCCCAGACTCAATCCTCCTCCTCATCTTCAACAACATCGGCGACGTCAAAGCCT 206
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 175 ATAAGCTCCCTGACTCAATCCTCCTCCTCATCGTCAACAACATCGGCGACGTCAAAGCCT 116
Query 207 TAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATTCCTTAATCC 251
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATTCCTTAATCC 71
Score = 108 bits (58), Expect = 2e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 293 TCCGACGACGATTCTTCCTCTCTCCTCTCCGATAAACCTCGATCCGCCTCCGCCGCTTCT 352
||| |||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||
Sbjct 73 TCC-ACGACGATTCTTCCTCTCTCCTCTCCGATAAACCTCGATCCGTCGCCGCTGCTACT 15
Query 353 CCTTTCTCCGCCAT 366
||||||||||||||
Sbjct 14 CCTTTCTCCGCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5