BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18395.1

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946360 jgi|Araly1|946360|scaffold_702589.1                        641    0.0  


> Ahg946360 jgi|Araly1|946360|scaffold_702589.1
Length=401

 Score =  641 bits (347),  Expect = 0.0
 Identities = 384/402 (96%), Gaps = 2/402 (0%)
 Strand=Plus/Plus

Query  12   TATGGAGACAAGGTTTCCAAATGTTGCAAAAATCACCCTA-CATCTTTATCTCCGACGAC  70
            ||||||||||||||||||||||||| |||||||||||||| | |||||||||| ||||||
Sbjct  1    TATGGAGACAAGGTTTCCAAATGTTACAAAAATCACCCTATC-TCTTTATCTCAGACGAC  59

Query  71   AATGATCAGAATAATCTCCAGTACACGAGCTTGAAAGACGTGATCTCAAGTTCCGATGGA  130
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  60   AATGATCACAATAATCTCCAGTACACGAGCTTGAAAGATGTGATCTCAAGTTCCGATGGA  119

Query  131  TTTGGTTCGTTGTTTTGTCACCCACAATACAGTGTTCCTTCACAAGATGGTTTTCTCTTG  190
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  120  TTTGGTTCGTTGTTTTGTCACCCACAATACAGTGTTCCTTCACAAGATGGGTTTCTCTTG  179

Query  191  TCAGAGATGGATTCTTCTAACATCGCCATTAGCAACGAGCTCGTGAAAAGAGCAGCCTCG  250
            || ||||||||||||||||||||||||||||| |||||||| |||||||||||||| || 
Sbjct  180  TCTGAGATGGATTCTTCTAACATCGCCATTAGAAACGAGCTTGTGAAAAGAGCAGCTTCA  239

Query  251  ATGTATGTTCAATCTTCTATGATTGTCATTGCTCCTGACACGAATTGGTTCCAGAGATTC  310
            ||||||||||||||||||||| |||| ||||| ||||| ||||| |||||||||||||||
Sbjct  240  ATGTATGTTCAATCTTCTATGGTTGTTATTGCCCCTGATACGAACTGGTTCCAGAGATTC  299

Query  311  TGTTTGAAGGCTAAGCATCAGGCGGTTGCTGCGATTGATTGTCTTAGACCGGTTTGCCGG  370
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TGTTTGAAAGCTAAGCATCAGGCGGTTGCTGCGATTGATTGTCTTAGACCGGTTTGCCGG  359

Query  371  ATTTTCGCTCGGTCTAGTTAAGAGATGTCTTTAGAAAGGGTG  412
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  ATTTTCGCTCGGTCTAGTTAAGAGATGTCTTTAGAAAGGGTG  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17666037707


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5