BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18400.1

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493019 jgi|Araly1|493019|fgenesh2_kg.7__2452__AT4G18400.1         529    9e-150


> Ahg493019 jgi|Araly1|493019|fgenesh2_kg.7__2452__AT4G18400.1
Length=443

 Score =  529 bits (286),  Expect = 9e-150
 Identities = 326/345 (94%), Gaps = 3/345 (1%)
 Strand=Plus/Plus

Query  25   GAAACTTCTTCAATGGCGGAAGAAGAGAAGCGAACTTCACCGGAACCTCCTCTTCCTTCT  84
            |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAAACTCCTTTAATGGCGGAAGAAGAGAAGCGAACTTCACCGGAACCTCCTCTTCCTTCT  60

Query  85   CCGCCGGAATCTTCATCC-CAACCCGAACATCCCCCACCGGAAACGTCTACTCCTCCGGC  143
            |||||||||||||| ||| |||||| || |||| || |||||| | |||||| |||||||
Sbjct  61   CCGCCGGAATCTTC-TCCTCAACCCAAAGATCCACCGCCGGAATCTTCTACTTCTCCGGC  119

Query  144  TACATTCGATCCTAGTCGAATGATTGGGATCATCAAAAGGAAAGCTTTGATTAAGGATTT  203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TACATTCGATCCTAGTCGAATGATTGGGATCATCAAAAGGAAAGCTTTGATTAAGGATTT  179

Query  204  AGCTGCTGCTTACCACGTTGAGTGTCTTGCTCTTTGCCGAGAGCTTCTGGAGCTCCAAAA  263
            |||||||||||||||||  ||||||||||||||||||||||| ||||| ||||| |||||
Sbjct  180  AGCTGCTGCTTACCACGCCGAGTGTCTTGCTCTTTGCCGAGAACTTCTCGAGCTTCAAAA  239

Query  264  GAGAAAGGACGAGCCGTTCCTGGACACAAAAGCTACGGAAGATCTGAGAAAAGAGACGTT  323
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  240  GAGAAAGGACGAGCCGTTCCTGGACACCAAAGCTACGGAAGATCTGAGAAAAGAGACGTT  299

Query  324  GAGGTCTTCTTCCAAACGAGCTAAGAAGAAACGTTAAAAGGAAAA  368
            ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct  300  GAGGTCTTCTTCCAAACGAGCTAAGAAAAAACGTTAAAAG-AAAA  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18848860966


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5