BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18425.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946353 jgi|Araly1|946353|scaffold_702582.1 1081 0.0
Ahg948342 jgi|Araly1|948342|scaffold_800229.1 351 3e-96
> Ahg946353 jgi|Araly1|946353|scaffold_702582.1
Length=686
Score = 1081 bits (585), Expect = 0.0
Identities = 647/677 (96%), Gaps = 3/677 (0%)
Strand=Plus/Plus
Query 61 GGAAACAACTTC-AAAGATATGGAGATCAAAGTTGACGAAGGTCATCAAAAAGGTACTAA 119
|||||||||||| ||| ||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 3 GGAAACAACTTCAAAAAATATGGAGATCAAAGTTGATGAAGATCATCAAAAAAGTACTAA 62
Query 120 AGAAGACATTACAAGGCCACTTCTTGAAGAAGACAAAGACTTCCCGGATATAGAAAGAAC 179
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 63 AGAAGACATCACAAGGCCACTTCTTGAAGAAGACAAAAACTTCCCGGATATAGAAAGAAC 122
Query 180 GACATGGATACAAAAGGCAATAGGTCAAACATTTCAAACCACTGCTCATTTAGCTAATCT 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 GACATGGATACAAAAGGCAATAGGTCAAACGTTTCAAACCACTGCTCATTTAGCTAATCT 182
Query 240 CTTACCAACAGGAACCGTTCTCGCGTTTCAGCTTC-TATCGCCAATTTTCTCAAATGGCG 298
||||||||||||||| || ||||||||||||| || ||||||||||||||||||| ||||
Sbjct 183 CTTACCAACAGGAACGGTGCTCGCGTTTCAGC-TCTTATCGCCAATTTTCTCAAACGGCG 241
Query 299 GTCAATGCGATTTAGTGAGCAAGATAATGACATCGACACTGGTAGCAATATGTGGATTCT 358
||||||||||||||||||||||||| |||||||| || || || ||||||||||||||||
Sbjct 242 GTCAATGCGATTTAGTGAGCAAGATCATGACATCAACTCTAGTGGCAATATGTGGATTCT 301
Query 359 CTTGCTTCATACTTAGCTTCACAGATTCTTACAAAGACAAAAACGGTACTATTTGCTATG 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 302 CTTGCTTCATACTTAGCTTCACGGATTCTTACAAAGACAAAAACGGTACTATTTGTTATG 361
Query 419 GACTTGCAACAATCCATGGGTTTTGGATCATTGATGGATCCACAACTCTTCCTCAAGAGT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 362 GACTTGCAACAATCCATGGGTTTTGGATCATTGATGGATCCACAACTCTTCCTCAAGAAT 421
Query 479 TATCTAAGAGATATAAGCTAAGATTTATAGATTTTGTTCATGCTTTCATGTCGTTATTCG 538
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 422 TATCTAAGAGATATAAGTTAAGATTCATAGATTTTGTTCATGCTTTCATGTCGTTATTCG 481
Query 539 TGTTTGGTGCGGTGGTTTTATTCGATCGAAATGCGGTAAATTGTTTCTTTCCATCACCGT 598
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 482 TGTTTGGTGCGGTGGTTCTATTCGATCGAAATGCGGTAAATTGTTTCTTTCCGGCACCGT 541
Query 599 CAGCAGAAGCATTGGAAGTTCTTACAGCTTTGCCGGTAGGCGTAGGGGTGTTTTCTAGTA 658
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 542 CAGCGGAAGCATTGGAAGTTCTTACCGCTTTGCCGGTAGGCGTAGGGGTGTTTTGTAGTA 601
Query 659 TGTTGTTTGCAACATTTCCTACAACACGCAATGGGATTGGTTTTCCACTTTCTAGTAAAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGTTGTTTGCAACATTTCCTACAACACGCAATGGGATTGGTTTTCCACTTTCTAGTAAAT 661
Query 719 GATATCAATATGCTGtt 735
|||||||||||| ||||
Sbjct 662 GATATCAATATGTTGTT 678
> Ahg948342 jgi|Araly1|948342|scaffold_800229.1
Length=700
Score = 351 bits (190), Expect = 3e-96
Identities = 463/588 (79%), Gaps = 46/588 (8%)
Strand=Plus/Plus
Query 157 GACTTCCCGGATATAGAAA-GAACGAC-ATGGATACAAAAGGCAATAGGTCAA-ACATTT 213
||||| || || ||||||| |||| || || ||| ||||||||||||||| || || |||
Sbjct 117 GACTTTCCTGACATAGAAAGGAAC-ACTAT-GATGCAAAAGGCAATAGGT-AAGACTTTT 173
Query 214 CAAACCACTGCTCATTTAGCTAATCTCTTACCAACAGGAACCGTTCTCGCGTTTCAGCTT 273
|| ||||| ||| || |||||||||| |||||||| || || ||||| ||||| ||| |
Sbjct 174 CAGACCACAGCTAATCTAGCTAATCTTTTACCAACGGGGACAGTTCTTGCGTTCCAG-AT 232
Query 274 C-TATCGCCAATTTTCTCAAATGGC-GGTCAATGCGATTTAG-TGAGCAAGA-TAATGAC 329
| |||||||||||| | ||||| || || ||||||||| ||| | ||| ||| | |||||
Sbjct 233 CTTATCGCCAATTTGCACAAAT-GCTGGGCAATGCGATCTAGCT-AGC-AGAGTCATGAC 289
Query 330 ATCGACACTGGTAG---CAATATGTGGATTCTCTTGCTTCATACTTAGCTTCACAGATTC 386
| | || || ||| | || ||||| |||||||| |||||||||||||||||||||||
Sbjct 290 -T-G-CATTGCTAGTTTCCATCTGTGGGTTCTCTTGTTTCATACTTAGCTTCACAGATTC 346
Query 387 TTACAAAGACAAAAACGGTACTATTTGCTATGGACTTGCAACAATCCATGGGTTTTGGAT 446
|||||| ||| || || | | | ||||||||| |||||||||||||||| ||||||||
Sbjct 347 TTACAAGGACTTGAATGGAAATGTCTGCTATGGATTTGCAACAATCCATGGTTTTTGGAT 406
Query 447 CATTGATGGATCCA-CAACTCTTCCTCAAGA--GTTATCTAAGAGATATAAGCTA-AGAT 502
|||||||| || | | |||||||||||||| ||| | || || || || ||| || |
Sbjct 407 AATTGATGGCTC-AGCTACTCTTCCTCAAGAACGTTC-CAAA-AGCTACAAACTACAG-T 462
Query 503 TTATAGATTTTGT-TCATGCT-TTCATGTCGTTAT-TCGTGTTTGGTGCGGTGGTTTTAT 559
||||||| || || | |||| || |||||||| | | || ||||| || |||||||| |
Sbjct 463 TTATAGACTTCGTAT-ATGCCATT-ATGTCGTT-TCTGGTTTTTGGAGCCGTGGTTTTGT 519
Query 560 TCGATC-GAAATGCGGT-AAATTGTTTCTTTCCATCA-CCGTCAGCAGAAGCATTGGAAG 616
| |||| ||| |||||| |||| |||||||||| | | || ||||| |||| | || |
Sbjct 520 TTGATCAGAA-TGCGGTTAAAT-GTTTCTTTCC-TGAACCATCAGCTGAAGTAGCAGA-G 575
Query 617 -TTCTTACAGCTTTGCCGGTAGGCGTAGGGGTGTTTT-CTAGTATGTTGTTTGCAACATT 674
|||| ||| ||||||| |||| |||||| || || | | |||||| |||| || || ||
Sbjct 576 CTTCTCACAACTTTGCCCGTAGCCGTAGGAGTCTTCTGC-AGTATGGTGTTCGCTACGTT 634
Query 675 TCCTACAACACGCAATGGGATTGGTTTTCCACTTTCTAG-TAAATGAT 721
|||||| |||||| | || ||||||||||| || ||| | ||||||||
Sbjct 635 TCCTACTACACGCCACGGTATTGGTTTTCCCCTCTCT-GCTAAATGAT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5