BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18430.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493018 jgi|Araly1|493018|fgenesh2_kg.7__2451__AT4G18430.1 1347 0.0
> Ahg493018 jgi|Araly1|493018|fgenesh2_kg.7__2451__AT4G18430.1
Length=876
Score = 1347 bits (729), Expect = 0.0
Identities = 796/829 (96%), Gaps = 2/829 (0%)
Strand=Plus/Plus
Query 1 CAACATCTCTCTGAATTCTTCTTTACGATTTTGTAACTTCTATCAAATACCTTAATAATG 60
||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||
Sbjct 1 CAACATCTCTCTGAATTCTTCTTTAATAATTTGTAACTTCGATCAAATATCTTAATAATG 60
Query 61 GGAGCCTACAGAGCCGACGACGACTACGATTATCTCTTCAAACTAGTCTTGATTGGAGAT 120
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GGAGCGTACAGAGCCGACGACGACTACGATTATCTCTTTAAACTAGTCTTGATTGGAGAT 120
Query 121 TCCGGCGTCGGAAAATCCAATCTTTTGTCTCGCTTCACCAGAAACGAATTCAGCATCGAG 180
||||||||||||||||| || || |||||||| ||||||||||| |||||||||||||||
Sbjct 121 TCCGGCGTCGGAAAATCAAACCTCTTGTCTCGATTCACCAGAAATGAATTCAGCATCGAG 180
Query 181 TCAAAGTCAACCATCGGTGTCGAGTTCGCCACAAGAAGTGTTCATGTCGACGAAAAAATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCAAAGTCAACCATCGGTGTCGAGTTCGCCACAAGAAGTGTTCATGTCGACGAGAAAATC 240
Query 241 ATCAAAGCTCAGCTTTGGGACACCGCTGGTCAAGAAAGATACAGAGCAATCACGAGTGCA 300
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ATCAAAGCTCAGCTTTGGGATACCGCTGGTCAAGAAAGGTACAGAGCAATCACGAGTGCA 300
Query 301 TACTACAGAGGAGCAGTGGGGGCACTTCTAGTATACGACATAACTCGACACATAACGTTC 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TACTACAGAGGAGCAGTGGGGGCACTTCTAGTATACGACATAACTAGACACATAACGTTC 360
Query 361 GAAAACGTTGAAAGATGGCTCAAGGAGCTTCGTGACCATACCGATGCCAACGTTGTAATC 420
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 GAAAACGTTGAACGATGGCTCAAGGAGCTTCGTGACCATACTGATGCCAACGTTGTGATC 420
Query 421 ATGCTTGTTGGAAACAAAGCCGATCTTCGTCACCTTCGTGCAGTTCCCACAGAAGAAGCT 480
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 421 ATGCTTGTTGGAAACAAAGCCGATCTTCGACACCTTCGTGCAGTCCCCACAGAAGAAGCT 480
Query 481 AGATCATTCTCTGAAAGAGAAAACATGTTTTTCATGGAGACTTCTGCTTTGGATGCTACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGATCATTCTCTGAAAGAGAAAACATGTTTTTCATGGAGACTTCTGCTTTGGATGCTACA 540
Query 541 AATGTCGAACAAGCTTTCACTCATGTCTTGACTCAAATCTATCGTGTAATGAGCCGTAAA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AATGTCGAACAAGCTTTCACTCATGTTTTGACTCAAATCTATCGTGTAATGAGCCGTAAA 600
Query 601 GCTCTTGATGGTACTGGAGATCCGATGTCTTTACCTAAAGGACAAACCATTGATATCGGA 660
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 601 GCTCTTGATGGTACTGGAGATCCGATGTCTTTACCTAAAGGACAGACCATTGATATTGGA 660
Query 661 AATAAGGATGATGTTACTGCTGTTAAATCTTCTGGTTGTTGCTCAGGTTGAGATTAttgt 720
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 AACAAAGATGATGTTACTGCTGTTAAATCATCTGGTTGTTGCTCAGGTTGAGATTATTGT 720
Query 721 ttttgttt-ttgtaaactgtctttttggaagaaggctttggctttggttttgttgtattg 779
|||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 721 TTTTGTTTCTTGTAAACTGTCTTTTTGGAAGGAGGTTTTGGATTTGGTTTTGTTGTATTG 780
Query 780 gactatttttGGGGGCTTCATTTTAAGGTTATGAGACCGGTTTG-TTTT 827
|||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 781 GACTATTTTTGGGGACTTCATTTTAAGGTTATGAGACCGGTTTGGTTTT 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5