BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18430.1 Length=897 Score E Sequences producing significant alignments: (Bits) Value Ahg493018 jgi|Araly1|493018|fgenesh2_kg.7__2451__AT4G18430.1 1347 0.0 > Ahg493018 jgi|Araly1|493018|fgenesh2_kg.7__2451__AT4G18430.1 Length=876 Score = 1347 bits (729), Expect = 0.0 Identities = 796/829 (96%), Gaps = 2/829 (0%) Strand=Plus/Plus Query 1 CAACATCTCTCTGAATTCTTCTTTACGATTTTGTAACTTCTATCAAATACCTTAATAATG 60 ||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||| Sbjct 1 CAACATCTCTCTGAATTCTTCTTTAATAATTTGTAACTTCGATCAAATATCTTAATAATG 60 Query 61 GGAGCCTACAGAGCCGACGACGACTACGATTATCTCTTCAAACTAGTCTTGATTGGAGAT 120 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 GGAGCGTACAGAGCCGACGACGACTACGATTATCTCTTTAAACTAGTCTTGATTGGAGAT 120 Query 121 TCCGGCGTCGGAAAATCCAATCTTTTGTCTCGCTTCACCAGAAACGAATTCAGCATCGAG 180 ||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||| Sbjct 121 TCCGGCGTCGGAAAATCAAACCTCTTGTCTCGATTCACCAGAAATGAATTCAGCATCGAG 180 Query 181 TCAAAGTCAACCATCGGTGTCGAGTTCGCCACAAGAAGTGTTCATGTCGACGAAAAAATC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 TCAAAGTCAACCATCGGTGTCGAGTTCGCCACAAGAAGTGTTCATGTCGACGAGAAAATC 240 Query 241 ATCAAAGCTCAGCTTTGGGACACCGCTGGTCAAGAAAGATACAGAGCAATCACGAGTGCA 300 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 241 ATCAAAGCTCAGCTTTGGGATACCGCTGGTCAAGAAAGGTACAGAGCAATCACGAGTGCA 300 Query 301 TACTACAGAGGAGCAGTGGGGGCACTTCTAGTATACGACATAACTCGACACATAACGTTC 360 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 TACTACAGAGGAGCAGTGGGGGCACTTCTAGTATACGACATAACTAGACACATAACGTTC 360 Query 361 GAAAACGTTGAAAGATGGCTCAAGGAGCTTCGTGACCATACCGATGCCAACGTTGTAATC 420 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 361 GAAAACGTTGAACGATGGCTCAAGGAGCTTCGTGACCATACTGATGCCAACGTTGTGATC 420 Query 421 ATGCTTGTTGGAAACAAAGCCGATCTTCGTCACCTTCGTGCAGTTCCCACAGAAGAAGCT 480 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 421 ATGCTTGTTGGAAACAAAGCCGATCTTCGACACCTTCGTGCAGTCCCCACAGAAGAAGCT 480 Query 481 AGATCATTCTCTGAAAGAGAAAACATGTTTTTCATGGAGACTTCTGCTTTGGATGCTACA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGATCATTCTCTGAAAGAGAAAACATGTTTTTCATGGAGACTTCTGCTTTGGATGCTACA 540 Query 541 AATGTCGAACAAGCTTTCACTCATGTCTTGACTCAAATCTATCGTGTAATGAGCCGTAAA 600 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 AATGTCGAACAAGCTTTCACTCATGTTTTGACTCAAATCTATCGTGTAATGAGCCGTAAA 600 Query 601 GCTCTTGATGGTACTGGAGATCCGATGTCTTTACCTAAAGGACAAACCATTGATATCGGA 660 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 601 GCTCTTGATGGTACTGGAGATCCGATGTCTTTACCTAAAGGACAGACCATTGATATTGGA 660 Query 661 AATAAGGATGATGTTACTGCTGTTAAATCTTCTGGTTGTTGCTCAGGTTGAGATTAttgt 720 || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 661 AACAAAGATGATGTTACTGCTGTTAAATCATCTGGTTGTTGCTCAGGTTGAGATTATTGT 720 Query 721 ttttgttt-ttgtaaactgtctttttggaagaaggctttggctttggttttgttgtattg 779 |||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct 721 TTTTGTTTCTTGTAAACTGTCTTTTTGGAAGGAGGTTTTGGATTTGGTTTTGTTGTATTG 780 Query 780 gactatttttGGGGGCTTCATTTTAAGGTTATGAGACCGGTTTG-TTTT 827 |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 781 GACTATTTTTGGGGACTTCATTTTAAGGTTATGAGACCGGTTTGGTTTT 829 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33243183624 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5