BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18450.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946350 jgi|Araly1|946350|scaffold_702579.1 1210 0.0
> Ahg946350 jgi|Araly1|946350|scaffold_702579.1
Length=956
Score = 1210 bits (655), Expect = 0.0
Identities = 832/918 (91%), Gaps = 9/918 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGGCAATATCCAAGAACTAGACGGCGAGATCCTAAAGAACGTTTGGGCGAAT 60
||||||||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||
Sbjct 21 ATGGCTTTTGGCAATATCCAAGAACCAGACGGAGAGATCCTAGAGAATGTTTGGGCGAAT 80
Query 61 TACATCGGAACACCACAAACCGATACAAGATCAATTCAAGTTCCAGAAGTTTCTAGAACT 120
| |||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 81 TTCATCAGAAAACCACAAACCGATAAAAGATCAATTCATGTTCCAGAAGTTTCTAGAACT 140
Query 121 TGGGAAGCGTTGCCTACCCTTGATGACATACCAGAAGGTTCTAGAGAAATGCTTCAAAGC 180
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 141 TGGGGAGCGTTGCCTACCCTTGATGACATACCAGAAGATTCTAAAGAAATGCTTCCAAGC 200
Query 181 CTAGATATGTCGACGGAGGACCAGGAATGGACAGAGATTCTCGATGCT-ATTGCTTCTTT 239
||||||||||||| |||||||| ||||||||||||||||||||||| | || ||||||||
Sbjct 201 CTAGATATGTCGATGGAGGACCTGGAATGGACAGAGATTCTCGATG-TGATCGCTTCTTT 259
Query 240 CCCAAACAAAACCAATCATGATCCATTAACCAACCCTACCATTGATTCATGTTCTTTGTC 299
||| | | ||||||||||||| ||||||||||||||||||| ||||| |||| |||| |
Sbjct 260 CCCGAGCGAAACCAATCATGACCCATTAACCAACCCTACCACCGATTCTTGTTTTTTGCC 319
Query 300 TTCTCGGGTTTCTTGCAAAACAAGAAAATACAGGGGAGTACGGAAGCGTCCGTGGGGGAA 359
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 320 TTCTCGGGTTTGTTGCAAAACAAGAAAATACAGGGGAGTACGGAGGCGTCCGTGGGGGAA 379
Query 360 ATTTGCAGCCGAAATCAGGGATTCGACGAGAAACGGTGTTAGGGTTTGGCTCGGAACGTT 419
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ATTCGCAGCAGAGATCAGGGATTCGACGAGAAACGGTGTTAGGGTTTGGCTCGGAACGTT 439
Query 420 CCAAACTGCAGAGGAAGCAGCTATGGCTTACGATAAAGCCGCGGTTAGAATTAGAGGTAC 479
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 440 CCAAACAGCAGAAGAGGCAGCTATGGCTTACGATAAAGCCGCGGTTAGAATTAGAGGAAC 499
Query 480 TCAAAAAGCTCACACAAATTTTCAGCTCGAAACAGTTATAAAAGCTATGGAAATGGATTG 539
||||||||| ||||| |||||||| ||||| || ||||| ||||||||||||||||||||
Sbjct 500 TCAAAAAGCGCACACGAATTTTCAACTCGAGACGGTTATTAAAGCTATGGAAATGGATTG 559
Query 540 CAACCCAAACTACTACCGGATGAACAACTCAAATACGTCCGATCCATTAAGAAGCAGCCG 599
||||||||||||||||| ||| |||| ||| ||||||||| | ||||||||||| |||
Sbjct 560 CAACCCAAACTACTACCCGATAAACAGCTCGAATACGTCCCAGCCATTAAGAAGTGGCCA 619
Query 600 CAAAATCGGATTGAGAACAG-GAAAAGAGGCGGTTAAGGCTTATGATGAAGTCGTTGATG 658
|||||| ||||||||||| | ||||||||||| ||| |||||||||| ||||||||||||
Sbjct 620 CAAAATTGGATTGAGAAC-GAGAAAAGAGGCGATTAGGGCTTATGATAAAGTCGTTGATG 678
Query 659 GGATGGTTGAAAACCATTGTGCCCTTAGCTATTGTTCAACTAAGGAGCACTCGGAGAC-T 717
| ||||||||||||| ||||||||||| | ||||||||||||| || |||||||||| |
Sbjct 679 AGTTGGTTGAAAACCACTGTGCCCTTAGTTGTTGTTCAACTAAGAAGTACTCGGAGACGT 738
Query 718 CGTGGTTTGCGTGGGAGTGAAGAAACTTGGTTCGATTTAAGAAAGAGACGAAGGAGTAAT 777
|||| ||| ||||||||||||||||||||| | || ||||||||||||||||||| |
Sbjct 739 -GTGGGCTGCTTGGGAGTGAAGAAACTTGGTTAGGTTCAAGAAAGAGACGAAGGAGTGAC 797
Query 778 GAAGATTCTATGTGTCAAGAAGTTGAAATGCAGAAGACGGTTACTG---GAGAAGAGACA 834
|||||| ||||| | ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 798 AAAGATTATATGTTTGAAGAAGTTGAAATGCAGAAGATGGTTACTGAACAAGAAGAGACA 857
Query 835 GTATGTGATGTGTTTGGTTTGTTTGAGTTTGAGGATTTGGGAAGTGATTATTTGGAGACG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 858 TTATGTGATGTGTTTGGTTTGTTTGAGTTTGAGGATTTGGGAAGTGATTATTTGGACACG 917
Query 895 TTATTATCTTCTTTTTGA 912
|||||||||||||| |||
Sbjct 918 TTATTATCTTCTTTCTGA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5