BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18460.1 Length=805 Score E Sequences producing significant alignments: (Bits) Value Ahg946348 jgi|Araly1|946348|scaffold_702577.1 793 0.0 Ahg930345 jgi|Araly1|930345|scaffold_302802.1 263 2e-69 > Ahg946348 jgi|Araly1|946348|scaffold_702577.1 Length=502 Score = 793 bits (429), Expect = 0.0 Identities = 478/502 (95%), Gaps = 1/502 (0%) Strand=Plus/Plus Query 98 GGAATTGTCAGATCAGAGCAATGAGAGCTGTAATCCAAAGAGTCTCATCTTCCTCTGTTA 157 |||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 GGAATTATCAGATTAGAGCAATGAGAGCTGTAATCCAGAGAGTCTCATCTTCCTCTGTTA 60 Query 158 CGGTGGATGGTCGAATCGTATCGGAGATTGGTCCTGGTCTCTTGGTACTAATTGGAATCC 217 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 CAGTGGATGGTCGAATCGTATCGGAGATTGGTCCTGGTCTCTTGGTATTAATTGGAATCC 120 Query 218 ATGAATCAGATACCGAGTCTGACGCTGATTACATATGTCGAAAAGTTTTAAACATGAGAT 277 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATGAATCAGATACCGATTCTGACGCTGATTACATATGTCGAAAAGTTTTAAACATGAGAT 180 Query 278 TATTCTCTAATGAAACCACTGGCAAAGGATGGGACCAAAATGTAATGCAGAGGAATTATG 337 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 TGTTCTCTAATGAAACCACTGGCAAAGGATGGGACCAAAATGTGATGCAGAGGAATTATG 240 Query 338 GAGTTTTACTTGTTAGTCAATTCACATTATACGGATTCTTGAAAGGTAACAAACCAGATT 397 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 241 GAGTTTTACTTGTTAGTCAGTTCACATTATACGGATTCTTGAAAGGTAACAAACCTGATT 300 Query 398 TTCATGTCGCAATGCCACCTGATAAAGCGAAACCTTTTTACGCCTCTTTAGTTGAGAAAT 457 ||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||| Sbjct 301 TTCATGTCGCAATGCCACCTGATAAAGCGAAGCCGTTTTACGCCTCTTTACTCGAGAAAT 360 Query 458 TCCAGAAAGCATATAATCCTGATGCTGTCAAAGATGGTGTGTTTGGAGCTATGATGCAGG 517 ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| Sbjct 361 TCCAGAAAGCATATAATCCCGATGCAGTAAAAGATGGTGTGTTTGGAGCTATGATGCAGG 420 Query 518 TCAATCTTGTAAACGATGGTCCGGTCACGATGCAGCTCGACTCACCTCAATCCACCAAGT 577 |||||||||||||||| ||||| |||||||||||||| || ||||| |||||| |||||| Sbjct 421 TCAATCTTGTAAACGACGGTCCAGTCACGATGCAGCTTGAATCACCCCAATCCTCCAAGT 480 Query 578 AAGCCAAGATTGTTTTGCATAA 599 ||||||||||| |||||||||| Sbjct 481 AAGCCAAGATT-TTTTGCATAA 501 > Ahg930345 jgi|Araly1|930345|scaffold_302802.1 Length=670 Score = 263 bits (142), Expect = 2e-69 Identities = 160/169 (95%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 349 GTTAGTCAATTCACATTATACGGATTCTTGAAAGGTAACAAACCAGATTTTCATGTCGCA 408 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 249 GTTAGTCAGTTCACATTATACGGATTCTTGAAAGGTAACAAACCTGATTTTCATGTCGCA 308 Query 409 ATGCCACCTGATAAAGCGAAACCTTTTTACGCCTCTTTAGTTGAGAAATTCCAGAAAGCA 468 ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 309 ATGCCGCCTGATAAAGCGAAACCGTTTTACGCCTCTTTAGTCGAGAAATTCCAGAAAGCA 368 Query 469 TATAATCCTGATGCTGTCAAAGATGGTGTGTTTGGAGCTATGATGCAGG 517 |||||||| ||||| || |||||||||||||||||||||| |||||||| Sbjct 369 TATAATCCCGATGCAGTAAAAGATGGTGTGTTTGGAGCTACGATGCAGG 417 Score = 126 bits (68), Expect = 2e-28 Identities = 70/71 (99%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 252 ATGTCGAAAAGTTTTAAACATGAGATTATTCTCTAATGAAACCACTGGCAAAGGATGGGA 311 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2 ATGTCGAAAAGTTTTAAACATGAGATTGTTCTCTAATGAAACCACTGGCAAAGGATGGGA 61 Query 312 CCAAAATGTAA 322 ||||||||||| Sbjct 62 CCAAAATGTAA 72 Score = 54.7 bits (29), Expect = 1e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 321 AATGCAGAGGAATTATGGAGTTTTACTTG 349 ||||||||||||||||||||||||||||| Sbjct 154 AATGCAGAGGAATTATGGAGTTTTACTTG 182 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29735875260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5