BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18460.1
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946348 jgi|Araly1|946348|scaffold_702577.1 793 0.0
Ahg930345 jgi|Araly1|930345|scaffold_302802.1 263 2e-69
> Ahg946348 jgi|Araly1|946348|scaffold_702577.1
Length=502
Score = 793 bits (429), Expect = 0.0
Identities = 478/502 (95%), Gaps = 1/502 (0%)
Strand=Plus/Plus
Query 98 GGAATTGTCAGATCAGAGCAATGAGAGCTGTAATCCAAAGAGTCTCATCTTCCTCTGTTA 157
|||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GGAATTATCAGATTAGAGCAATGAGAGCTGTAATCCAGAGAGTCTCATCTTCCTCTGTTA 60
Query 158 CGGTGGATGGTCGAATCGTATCGGAGATTGGTCCTGGTCTCTTGGTACTAATTGGAATCC 217
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CAGTGGATGGTCGAATCGTATCGGAGATTGGTCCTGGTCTCTTGGTATTAATTGGAATCC 120
Query 218 ATGAATCAGATACCGAGTCTGACGCTGATTACATATGTCGAAAAGTTTTAAACATGAGAT 277
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAATCAGATACCGATTCTGACGCTGATTACATATGTCGAAAAGTTTTAAACATGAGAT 180
Query 278 TATTCTCTAATGAAACCACTGGCAAAGGATGGGACCAAAATGTAATGCAGAGGAATTATG 337
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TGTTCTCTAATGAAACCACTGGCAAAGGATGGGACCAAAATGTGATGCAGAGGAATTATG 240
Query 338 GAGTTTTACTTGTTAGTCAATTCACATTATACGGATTCTTGAAAGGTAACAAACCAGATT 397
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GAGTTTTACTTGTTAGTCAGTTCACATTATACGGATTCTTGAAAGGTAACAAACCTGATT 300
Query 398 TTCATGTCGCAATGCCACCTGATAAAGCGAAACCTTTTTACGCCTCTTTAGTTGAGAAAT 457
||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||
Sbjct 301 TTCATGTCGCAATGCCACCTGATAAAGCGAAGCCGTTTTACGCCTCTTTACTCGAGAAAT 360
Query 458 TCCAGAAAGCATATAATCCTGATGCTGTCAAAGATGGTGTGTTTGGAGCTATGATGCAGG 517
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 361 TCCAGAAAGCATATAATCCCGATGCAGTAAAAGATGGTGTGTTTGGAGCTATGATGCAGG 420
Query 518 TCAATCTTGTAAACGATGGTCCGGTCACGATGCAGCTCGACTCACCTCAATCCACCAAGT 577
|||||||||||||||| ||||| |||||||||||||| || ||||| |||||| ||||||
Sbjct 421 TCAATCTTGTAAACGACGGTCCAGTCACGATGCAGCTTGAATCACCCCAATCCTCCAAGT 480
Query 578 AAGCCAAGATTGTTTTGCATAA 599
||||||||||| ||||||||||
Sbjct 481 AAGCCAAGATT-TTTTGCATAA 501
> Ahg930345 jgi|Araly1|930345|scaffold_302802.1
Length=670
Score = 263 bits (142), Expect = 2e-69
Identities = 160/169 (95%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 349 GTTAGTCAATTCACATTATACGGATTCTTGAAAGGTAACAAACCAGATTTTCATGTCGCA 408
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 249 GTTAGTCAGTTCACATTATACGGATTCTTGAAAGGTAACAAACCTGATTTTCATGTCGCA 308
Query 409 ATGCCACCTGATAAAGCGAAACCTTTTTACGCCTCTTTAGTTGAGAAATTCCAGAAAGCA 468
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 309 ATGCCGCCTGATAAAGCGAAACCGTTTTACGCCTCTTTAGTCGAGAAATTCCAGAAAGCA 368
Query 469 TATAATCCTGATGCTGTCAAAGATGGTGTGTTTGGAGCTATGATGCAGG 517
|||||||| ||||| || |||||||||||||||||||||| ||||||||
Sbjct 369 TATAATCCCGATGCAGTAAAAGATGGTGTGTTTGGAGCTACGATGCAGG 417
Score = 126 bits (68), Expect = 2e-28
Identities = 70/71 (99%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 252 ATGTCGAAAAGTTTTAAACATGAGATTATTCTCTAATGAAACCACTGGCAAAGGATGGGA 311
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 ATGTCGAAAAGTTTTAAACATGAGATTGTTCTCTAATGAAACCACTGGCAAAGGATGGGA 61
Query 312 CCAAAATGTAA 322
|||||||||||
Sbjct 62 CCAAAATGTAA 72
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 321 AATGCAGAGGAATTATGGAGTTTTACTTG 349
|||||||||||||||||||||||||||||
Sbjct 154 AATGCAGAGGAATTATGGAGTTTTACTTG 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29735875260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5