BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18465.1
Length=2088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946347 jgi|Araly1|946347|scaffold_702576.1 3397 0.0
Ahg924423 jgi|Araly1|924423|scaffold_105704.1 309 5e-83
Ahg924425 jgi|Araly1|924425|scaffold_105706.1 159 6e-38
> Ahg946347 jgi|Araly1|946347|scaffold_702576.1
Length=2155
Score = 3397 bits (1839), Expect = 0.0
Identities = 2028/2115 (96%), Gaps = 29/2115 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTTTTGGAAACCAGGGACCGAGAAACCTCGTTTCGAAGAGGATGGAGAAGGAGGC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 21 ATGGCGTTTTGGAAACCAGGGACCGAGAAACCTAGTTTCGAAGAGGATGGAGAAGGAGGC 80
Query 61 ATAGTGTTCATGTCCAACAATCTCGCATCCTCTTCTTCTTCTAGCTATGGGTATGCGAAT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 81 ATAGTGTTCATGTCCAACAATCTCGCATCCTCTTCTTCTTCTAGTTATGGGTATGCGAAT 140
Query 121 ATAGAGAAGCAAAGACAGAGATTGCCAGTGTACAAGTACAGAACTGAGATTCTGTATTTG 180
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 141 ATAGAGAAGCAAAGACAGAGATTGCCAGTGTACAAGTACAGGACTGAGATTTTGTATTTG 200
Query 181 GTGGAGAATCACGCTACCACCATTATCGTTGGCGAGACGGGTAGTGGTAAAACTACTCAG 240
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 201 GTGGAGAATCACGCTACCACCATTATCGTTGGCGAGACGGGCAGTGGAAAAACTACTCAG 260
Query 241 ATTCCTCAGTACCTGAAAGAAGCTGGGTGGGCTGAAGGAGGCCGAGTTATTGCTTGCACA 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 261 ATACCTCAGTACCTGAAAGAAGCTGGATGGGCTGAAGGAGGCCGAGTTATTGCTTGCACA 320
Query 301 CAGCCAAGACGTTTAGCTGTCCAGGCGGTTTCTGCGAGAGTGGCCGAGGAAATGGGAGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CAGCCAAGACGTTTAGCTGTCCAGGCGGTTTCTGCGAGAGTGGCCGAGGAAATGGGAGTG 380
Query 361 AATCTTGGGGAGGAAGTTGGCTACACTATTCGATTTGAAGATCATACAACTTCCGGTGTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AATCTTGGGGAGGAAGTTGGCTACACTATTCGATTTGAAGATCATACAACTTCCGGTGTG 440
Query 421 ACT-AGTGTAAAATTTCTCACAGATGGGGTACTAATTCGAGAGATGATGGAGGATCCCCT 479
||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 441 ACTAAG-GTGAAATTTCTCACAGATGGGGTACTAATTCGAGAGATGATGGAGGATCCTCT 499
Query 480 CTTGACAAAGTATAGTGTTATTATGATAGATGAAGCTCATGAGAGATCTATTTCAACTGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 500 CTTGACAAAGTATAGTGTTATTATGATAGATGAAGCTCATGAGAGATCTATCTCAACTGA 559
Query 540 CATTTTA------CTC--------GG--TCTC--TTAAA-A-A-----AG--ATACAACG 572
||||||| ||| || |||| | ||| | | || ||||||||
Sbjct 560 CATTTTACTCGGTCTCTTAAAAAAGGTATCTCAGTCAAACATAGTCTTAGTTATACAACG 619
Query 573 TCGTCGTCCTGAGCTACGCCTGATTATATCTTCAGCCACAATCGAAGCAAAAACCATGTC 632
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 620 TCGTCGTCCTGAGCTACGCCTTATTATATCGTCAGCCACAATCGAAGCAAAAACAATGTT 679
Query 633 CAATTTCTTCAATTCCAGCAAAAAACGCCATGCGCCAGAAGGTAGTACCCCTGGACCAAA 692
||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 680 CAATTTCTTTAATCCCAGCAAAAAACGCCATGCGCCAGAAGGTAGTGCCCCTGGACCAAA 739
Query 693 GTTGGAACCTGCAATCTTATCTGTTGAGGGCAGAGGCTTCAGTGTGAAAATTCACTATGT 752
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GTTAGAACCTGCAATCTTATCTGTTGAGGGCAGAGGCTTCAGTGTGAAAATTCACTATGT 799
Query 753 CGAGGAGCCTGTATCAGATTATATCCGATCAGTTGTTTCAACGATACTGTTGATTAATGA 812
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 800 TGAGGAGCCTGTATCAGATTATATCCGATCAGTTGTTTCAACGATATTGTTGATTAATGA 859
Query 813 ACGGGAGCCACCTGGGGATGTTCTTGTATTTCTTACTGGTCAAGAGGATATTGAAACTGC 872
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 860 GCGGGAGCCACCTGGGGATGTTCTTGTATTTCTTACTGGTCAAGAGGATATCGAAACTGC 919
Query 873 TATTAAACTTCTTGAAGAAGAAGCTCATAGCAATCAAAAGAATTCTTCAGGACTGCTACC 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TATTAAACTTCTTGAAGAAGAAGCTCATAGCAATCAAAAGAATTCTTCAGGACTGCTACC 979
Query 933 TCTTCCATTATATTCAGGACTTTCTCGATCAGAACAGGAATTGATCTTTACTCCAACTCC 992
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 980 TCTGCCATTATATTCAGGACTCTCTCGATCAGAACAGGAATTGATCTTTACTCCAACTCC 1039
Query 993 CAGAGGAAAGAGAAAAGTTATACTATCAACAAATATTGCAGAAACTTCATTGACTCTAGA 1052
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1040 CAGAGGAAAGAGAAAAGTTATACTATCAACAAATATTGCTGAAACTTCATTGACTCTGGA 1099
Query 1053 GGGCGTTGTCTATGTGATTGATAGTGGTTTCTCGAAGCAGAAGTTCTATAACCCAATTTC 1112
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GGGTGTTGTCTATGTGATTGATAGTGGTTTCTCGAAGCAGAAGTTCTATAACCCAATTTC 1159
Query 1113 AGATATCGAAAGTCTTGTGGTGGCTCCAATATCAAAAGCATCTGCAAGGCAAAGGTCTGG 1172
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1160 GGATATCGAAAGTCTTGTGGTGGCACCTATATCCAAAGCATCTGCAAGGCAAAGGTCTGG 1219
Query 1173 TAGGGCTGGGCGAGTTCGGCCTGGGAAGTGTTACAGGCTTTACACCGAAGATTATTTTCT 1232
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1220 TAGGGCTGGGCGAGTTCGGCCTGGGAAGTGTTACAGGCTTTATACCGAAGATTATTTTCT 1279
Query 1233 CAACCAAATGCCTGGAGAAGGCATACCGGAGATGCAGAGGTCGAATCTTGTTTCTACTGT 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CAACCAAATGCCTGGAGAAGGCATACCGGAGATGCAGAGGTCGAATCTTGTTTCTACTGT 1339
Query 1293 AATACAGCTAAAAGCTTTGGGCATAGATAATATCTTGGGTTTCGATTGGCCTGCACCTCC 1352
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AATACAGCTAAAAGCTCTGGGCATAGATAATATCTTGGGTTTCGATTGGCCTGCACCTCC 1399
Query 1353 ATCGTCTGAAGCAATGATTCGAGCACTTGAAGTACTTTATTCACTTCAGATCCTCGATGA 1412
||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 ATCCCCTCAAGCAATGATCCGAGCACTTGAAGTACTTTATTCACTTCAGATCCTCGATGA 1459
Query 1413 TGATGCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCACTGGACCCAAT 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TGATGCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCACTGGACCCAAT 1519
Query 1473 GATATCAAAAATGATTTTGGCTTCAAGTGAGCTTGGTTGTTCACATGAGATCATTACAAT 1532
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1520 GATATCAAAAATGATTTTGGCTTCAAGTGAGCTTGGTTGTTCAGATGAGATCATTACAAT 1579
Query 1533 CGCTGCAGTTCTCTCTGTCCAATCTGTTTGGATCATTGCCCGGGGAGTACAGAAAGAACA 1592
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1580 CGCTGCAGTTCTCTCTATCCAATCTGTTTGGATCATTGCCAGGGGAGTACAGAAAGAACA 1639
Query 1593 AGATGAAGCAAAACTGAGATTTGCAGCCGCAGAGGGTGACCATGTCACATTCCTGAATGT 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 AGATGAAGCAAAACTGAGATTTGCAGCCGCAGAGGGTGACCATGTCACATTCCTGAATGT 1699
Query 1653 ATACAAAGGGTTTCTTGAGTCGAAAAAGCCTACACAGTGGTGTTACAAGAATTTCCTCAA 1712
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1700 ATACAAAGGGTTTCTTGAGTCGAAAAAGCCTTCACAGTGGTGTTACAAGAATTTCCTCAA 1759
Query 1713 CTACCAATCCATGAAAAAAGTAGTTGAAATCAGAGATCAACTCAAACGGATTGCTCGGAG 1772
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1760 CTACCAATCCATGAAAAAAGTAGTTGAAATCAGGGATCAACTCAAACGGATTGCTCGGAG 1819
Query 1773 ATTAGGCATCACCTTGAAATCATGTGACGGAGACATGGAGGCTGTGAGAAAAGCTGTGAC 1832
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1820 ATTAGGCATCACCTTGAAATCATGTGACAGAGACATGGAGGCTGTGAGAAAAGCCGTGAC 1879
Query 1833 TGCAGGtttttttGCCAATGCATGCCGTTTAGAACCACACAGCAATGGAGTATACAAGAC 1892
|||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 1880 TGCAGGGTTTTTTGCCAATGCATGCCGCTTAGAACCACACAGCAATGGTGTATTCAAGAC 1939
Query 1893 CATTAGAGGCTCTGAAGAAGTTTATATTCATCCGTCATCTGTATTATTCAGGGTGAATCC 1952
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1940 CATTAGAGGCTCTGAAGAAGTTTATATTCACCCTTCATCTGTATTATTCAGGGTGAATCC 1999
Query 1953 AAAATGGGTGGTTTACCAATCCATTGTCTCAACTGAGCGTCAATACATGCGGAATGTCGT 2012
||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 2000 GAAATGGGTGGTCTACCAATCCATCGTATCAACAGAGCGTCAATACATGCGGAATGTCGT 2059
Query 2013 CACCATCAATCCTTCTTGGCTGACAGAAGTTGCTCCACACTTTTACCAGAACCGGCAAAA 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2060 CACCATCAATCCTTCTTGGCTGACAGAAGTTGCTCCACACTTTTACCAGAACCGGCAAAA 2119
Query 2073 CGCTATGTCCTTCTA 2087
| |||||||||||||
Sbjct 2120 CACTATGTCCTTCTA 2134
> Ahg924423 jgi|Araly1|924423|scaffold_105704.1
Length=431
Score = 309 bits (167), Expect = 5e-83
Identities = 265/309 (86%), Gaps = 20/309 (6%)
Strand=Plus/Plus
Query 1260 GGAGATGCAGAGGTCGAATCTTGTTTCTACTGTAATACAGCTAAAAGCTTT-GGGCATAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 21 GGAGATGCAGAGGTCGAATCTTGTTTCTACTGTAATACAGCTAAAAGCTTTAGGG-ATAG 79
Query 1319 ATAATATCTTGGGTTTCGATTGGCCTGCACCTCCATCGTC-TGAAGCAATGATTC-GAGC 1376
|||||||||| ||||| | ||||||||||||| || | |||| ||||||| | ||||
Sbjct 80 ATAATATCTT-GGTTTTAAATGGCCTGCACCTCGGTC-CCATGAA-CAATGATCCGGAGC 136
Query 1377 ACTTGAAGTACTTTATTCACTTCAGATCCTCG-ATGATGATGCTAAACTCACTTCGCCAA 1435
||||||||||||||||||||| || |||| | |||||||||||||||||||||||||||
Sbjct 137 ACTTGAAGTACTTTATTCACTACAAATCCGAGCATGATGATGCTAAACTCACTTCGCCAA 196
Query 1436 CAGGATTCCAAGTTGCAGAACTTCCACTGGACCCA-ATGA-T--AT--CA------AAAA 1483
||||||||||||||||| ||||| |||| | | ||| | || || ||||
Sbjct 197 CAGGATTCCAAGTTGCAAAACTTGTACTGTTTCTACATGTCTCCATTTCATCGTCGAAAA 256
Query 1484 TGATTTTGGCTTCAAGTGAGCTTGGTTGTTCACATGAGATCATTACAATCGCTGCAGTTC 1543
||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 257 TGACTTTGGCTTCAAGTGAGCTTGGTTGTTCAGATGAGATCATTGCAACCGCTGCAGTTC 316
Query 1544 TCTCTGTCC 1552
||||| |||
Sbjct 317 TCTCTATCC 325
> Ahg924425 jgi|Araly1|924425|scaffold_105706.1
Length=366
Score = 159 bits (86), Expect = 6e-38
Identities = 139/162 (86%), Gaps = 13/162 (8%)
Strand=Plus/Plus
Query 1403 TCCTCGATGATGATGCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCAC 1462
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TCC-CGATGATGATGCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCAC 157
Query 1463 TGGACCCA-ATGA-T--AT--CA------AAAATGATTTTGGCTTCAAGTGAGCTTGGTT 1510
|| | | ||| | || || |||||||||||||||||||||||||||||||
Sbjct 158 TGTTTCTACATGTCTCCATTTCATCGTCGAAAATGATTTTGGCTTCAAGTGAGCTTGGTT 217
Query 1511 GTTCACATGAGATCATTACAATCGCTGCAGTTCTCTCTGTCC 1552
|||| ||||||||||| ||| |||||||||||||||| |||
Sbjct 218 GTTCTGATGAGATCATTGCAACCGCTGCAGTTCTCTCTATCC 259
Score = 63.9 bits (34), Expect = 5e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1263 GATGCAGAGGTCGAATCTTGTTTCTACTGTAATACAG 1299
|||||||||||||||||||||||||||||||| ||||
Sbjct 58 GATGCAGAGGTCGAATCTTGTTTCTACTGTAAAACAG 94
Score = 56.5 bits (30), Expect = 8e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1587 AGAACAAGATGAAGCAAAACTGAGATTTGCAGC 1619
|||||||||||||||||||||||||||| ||||
Sbjct 334 AGAACAAGATGAAGCAAAACTGAGATTTTCAGC 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78542085190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5