BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18470.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493014 jgi|Araly1|493014|fgenesh2_kg.7__2447__AT4G18470.1 2233 0.0
> Ahg493014 jgi|Araly1|493014|fgenesh2_kg.7__2447__AT4G18470.1
Length=1506
Score = 2233 bits (1209), Expect = 0.0
Identities = 1388/1474 (94%), Gaps = 13/1474 (1%)
Strand=Plus/Plus
Query 58 GAAATTGTGAAAGAGAAGATGTCGAAAGAGACGAAGGGTAATAACAATACAAGCAGAGTG 117
||||||||||||||||||||||||||||||||||| || |||||| || |||||||||
Sbjct 40 GAAATTGTGAAAGAGAAGATGTCGAAAGAGACGAA-GG--CTAACAACACTAGCAGAGTG 96
Query 118 ATGAGTGGCTATGGCGGTAGCTTGGAAGCTAACACCTTGGCTATGATTGATTCCACCGGA 177
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 97 ATGAGTAGCTATGGCGGTGGCTTGGAAGCTAACACCTTGGCTATGCTTGATTCCACCGGA 156
Query 178 GCTAAAGACAGTCGCGACGCTAACGAAGATCGTTTGCAGTATCTGGAAGCTGTTCGTGCT 237
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GCTAAAGACAATCGCGACGCTAACGAAGATCGTTTGCAGTATCTGGAAGCTGTTCGTGCT 216
Query 238 GCTTCACTTGTACCCGAAAATGGAATTCCTCCAACCAACAAAATGTACCAAGCGATTTTC 297
|||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 217 GCTTCACTTGTACCTGAGAATGGAGTTCCTCCAACCAACAAAATGTACCAAGCGATTTTC 276
Query 298 AGGATATTGAGATTTGGTAAAACATTGGAACTTATCACAGCAAGTTTCCAGCTTTTGACT 357
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 277 CGGATATTGAGATTTGGTAAAACACTGGAACTTATAACAGCAAGTTTCCAGCTTTTGACA 336
Query 358 CAATTACATCAGCGGTTTCCTTGGGTTTATGTATCTGATTCAGCTGATCAGTTGGACATC 417
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 337 CAATTACATCAGCGGTTTCCTTGGGTTTATGTATCTGATTCATCTGATCAGTTGGAAATT 396
Query 418 GTTGACGAGGCTTGGTCACCGTTTAATTTCGGGTCTGATGTTGATTCTGATGAAAAGGAT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 397 GTTGACGAGGCTTGGTCACCGTTTAATTTCGGGTCTGATGTTGATTCTGATGAGAAGGAT 456
Query 478 TTATCAGTGAGAAGCTTATTTTTGCAACAGCTGATTCAGAACATGAACAAAAGAGTTAAT 537
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |
Sbjct 457 ATATCAGTGAGAAGCTTATTTTTTCAACAGCTGATTCAAAACATGAACAAAAGGGTTAGT 516
Query 538 GAGTCTGAGGAATCAGATTTAAAGATC-CTTGGAAATATGTTTCTGTTCAAGTATCTTGC 596
||| ||||||||||| ||||||||| | || || ||||||||||||||||||||||||||
Sbjct 517 GAGCCTGAGGAATCAAATTTAAAGA-CTCTGGGGAATATGTTTCTGTTCAAGTATCTTGC 575
Query 597 TCATGTTCTTAAGCTAGATTTCACACCCCGAAATCAAGTGTATGAAGAAACTATGAACTG 656
||||| |||||||||||||||||| ||||| |||||||||||||||||||| | ||||||
Sbjct 576 TCATGCTCTTAAGCTAGATTTCACGCCCCGGAATCAAGTGTATGAAGAAACCAAGAACTG 635
Query 657 GAGTCTCTTAAAGGAATCTTTTCTGAATCTACTTCTGGCTTCAAGAAAAGTGAATTTCAA 716
|||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 636 GAGTCTTTTGAAGGAATCTTCTCTGAATCTACTTCTGGCTTCACGAAAAGTGAATTTCAA 695
Query 717 ACTTCTAATGAAAGATTATCTATCAACAATGTGTGCATCCATTGATGCTGATGAAAAGTC 776
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 696 ACTTCTAATGAAAGATTATCTATCAACAATGTGTGCACCCATTGATGCTGATGAAAAGTC 755
Query 777 TATCAGTTTGGTAGAATTGCACAAGGACATGCTTACTGCTATGAAAGAACTTCTAGTAAT 836
||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||||||
Sbjct 756 TATCAGTTTGGTAGAATTGCACAAGGACACGCTTTCTGCTATGAAGGAACTACTAGTAAT 815
Query 837 GATCATGGAGCTTGATACATCAAAGAAGAAAGCTGACTTAGAAGGGATTACCTCTAGAGG 896
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GATCATTGAGCTTGATTCTTCAAAGAAGAAAGCTGACTTAGAAGGGATTACCTCTAGAGG 875
Query 897 AGATGGCGTAAGGACCCCTGCAATGGAGATCATTCTCGACGAGCTGACTTATGATGGATA 956
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 876 AGATGGCGTAAGGACTCCTGCAATGGAGATCATTCTCGATGAGCTGACTTATGATGGATA 935
Query 957 CTTGCTGTCAAAATTTCTTCAGGTTTTCGATGATCCTAAATGGAAGCTAGAGATTGTTCT 1016
|||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 936 CTTGCTATCAAATTTTCTTCAGGTTTTCGATGATCCTAAATGGAAGTTAGAGATTGTTCT 995
Query 1017 CCAATACCTTACTAAATACATTCCTAAGCCTGT-TGTACGTACCCGAAGAACAACTGTTC 1075
|||||||||||| |||||||| ||||||||| | ||| ||||||||||||||||||||||
Sbjct 996 CCAATACCTTACCAAATACATCCCTAAGCCT-TCTGTTCGTACCCGAAGAACAACTGTTC 1054
Query 1076 CTCAAGCAGAGGATTCGAAAACACTAAATGGGATCTTGAAGACGTTTTCAAATGGCACAA 1135
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1055 CTCAATCAGAGGATTCGAAAACACTAAATGGGATCTTGAAGACATTTTCAAATGGCTTAA 1114
Query 1136 ATCCAAAGAACATCACTAAAAAGATAGGACCTGACATTGTTCAGATCCTCATCGGCCATG 1195
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1115 ATGCAAAGAACATCACTAAAAAGATAGGACCTGACATTGTTCAGATCCTCATCGGACATG 1174
Query 1196 CCTTTCTGGCTCGGCTTACATTCTCTGACCCTCACGAAGGAGACTCTATTTCAGAGATAT 1255
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 1175 CCTTTCTGGCTCGGCTTACATTCTCTGACCCTAACGAAGAAGACTCTATTACAGAGATAT 1234
Query 1256 GCAGTAGTATCATCTCTGCATTTACTAGTCTAAAGCGAGTAGATCAGAAAATCGAGATTC 1315
||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1235 GCAATAGAATCATCTCTGCATTTACAAGTCTAAAGCGAGTAGATCAGAAAATCGAGATTC 1294
Query 1316 TACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAATGGTACTCAAGGCAAAAGCTTAAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1295 TACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAATGGTACTCAAGGCAAAAGCATAAG 1354
Query 1376 GCATCTAGGAATCAAGATTTTAACAAATCTAGAGACTTCAATTGGATTAGAAGCAAAGAA 1435
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |||
Sbjct 1355 GCATCTAGGAATCAAGATTTTAACAAATCTAGAGGCTTCCATTGGATTAAAAGCAAGGAA 1414
Query 1436 GTTACAATGTAATGTAGGAATTAAGAGTTACAGATC-AATGAATTATGAATTTATATATT 1494
| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1415 GGTACA-TGTAATGTAGGAATTAAGAGTTACAG-TCCAATGAATTATGAATTTATATATT 1472
Query 1495 CTA-TA--GTTTTGCCAATACAAAATGAGTGATC 1525
||| || |||||||| |||||| ||||||||||
Sbjct 1473 CTACTATAGTTTTGCCGATACAAGATGAGTGATC 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5