BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18480.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946346 jgi|Araly1|946346|scaffold_702575.1 2311 0.0
Ahg494386 jgi|Araly1|494386|fgenesh2_kg.8__202__AT5G45930.1 1020 0.0
> Ahg946346 jgi|Araly1|946346|scaffold_702575.1
Length=1423
Score = 2311 bits (1251), Expect = 0.0
Identities = 1370/1428 (96%), Gaps = 6/1428 (0%)
Strand=Plus/Plus
Query 68 AAGCCAATCAGAAGCTGAGTAA-ACTCTAAGCTCACACAAAAATGGCGtctcttcttgga 126
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCCAATCAGAAGCTGAGTAATACTCTAAGCTCACACAAAAATGGCGTCTCTTCTTGGA 60
Query 127 acatcttcttctgcaatctgggcttctccttcactctcttctccttcctcaaaaccttcc 186
|||||||||||||| ||||||||||||||||| ||||||||| ||||||| | ||||||
Sbjct 61 ACATCTTCTTCTGCTATCTGGGCTTCTCCTTCTCTCTCTTCTTCTTCCTCTACACCTTCG 120
Query 187 tcctccCCCATTTGCTTCAGGCCAGGAAAATTGTTTGGAAGCAAGTTAAATGCAGGAATC 246
| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ACTTCTCCCATTTGCTTCAGGCCAGGGAAATTGTTTGGAAGCAAGTTAAATGCAGGAATC 180
Query 247 CAAATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCGGTTATGAATGTAGCCACT 306
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CAGATAAGGCCAAAGAAGAACAGGTCTCGTTACCATGTTTCTGTTATGAATGTAGCCACA 240
Query 307 GAAATCAACTCTACTGAACAAGTAGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCG 366
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAATCAACTCTACTGAAC-A--AGTAGGGAAGTTTGATTCAAAGAAGAGTGCGAGACCG 297
Query 367 GTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTTATGTCTTTTGTTGAAT 426
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 298 GTTTATCCATTTGCAGCTATAGTAGGGCAAGATGAGATGAAGTTATGTCTTCTGTTGAAT 357
Query 427 GTTATTGATCCAAAGATTGGTGGTGTTATGATTATGGGAGATAGAGGAACTGGAAAATCT 486
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 358 GTGATTGATCCAAAGATTGGTGGTGTGATGATTATGGGAGATAGAGGAACCGGAAAATCT 417
Query 487 ACAACTGTTAGATCATTAGTTGATCTGTTACCTGAGATTAATGTAGTTGCAGGTGACCCG 546
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 ACAACTGTTAGATCATTAGTTGATCTGTTACCAGAGATTAATGTAGTTGCAGGTGACCCG 477
Query 547 TATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGTAAGAGAGAGAGTTGAG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TATAACTCGGATCCGATAGATCCTGAGTTTATGGGTGTTGAAGTAAGAGAGAGAGTTGAG 537
Query 607 AAAGGAGAGCAAGTTCCTGTTATTGCGACTAAGATTAATATGGTTGATCTTCCTTTGGGT 666
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 AAAGGAGAGAAAGTTCCGGTTATTGCGACTAAGATTAATATGGTTGATCTTCCGTTGGGT 597
Query 667 GCAACAGAAGATAGAGTTTGTGGAACCATCGATATCGAAAAGGCTTTGACAGAAGGTGTA 726
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 GCAACAGAAGATAGAGTTTGTGGAACAATCGATATCGAAAAGGCTTTGACAGAAGGTGTA 657
Query 727 AAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGATTCTTTATGTTGATGAA 786
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 AAAGCCTTTGAGCCTGGTTTGTTGGCTAAAGCTAATAGAGGGATTCTCTATGTTGATGAA 717
Query 787 GTTAATCTCTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCTGGTTGG 846
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 GTTAATCTTTTGGATGATCATTTGGTTGATGTTCTTTTGGATTCAGCTGCTTCCGGTTGG 777
Query 847 AATACGGTTGAGAGAGAAGGGATTTCGATTTCTCACCCGGCGAGGTTTATCTTGATCGGT 906
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||
Sbjct 778 AATACGGTTGAGAGAGAAGGAATTTCGATTTCCCACCCGGCGAGGTTTATCTTAATTGGT 837
Query 907 TCAGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTGATCGGTTTGGTATGCAT 966
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 TCGGGAAATCCGGAAGAAGGAGAGCTTAGGCCACAGCTTCTTGATCGGTTTGGAATGCAT 897
Query 967 GCACAAGTAGGGACGGTTAGAGATGCTGATTTACGGGTCAAGATTGTTGAAGAGAGAGCT 1026
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 898 GCGCAAGTAGGGACGGTTAGAGATGCTGATTTACGAGTCAAGATTGTCGAAGAGAGAGCT 957
Query 1027 CGTTTCGATAGTAACCCAAAGGATTTCCGTGACACTTACAAAACCGAGCAGGACAAGCTT 1086
|||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 958 CGTTTCGATAGTGACCCAAAGGATTTCCGTGAAACTTACAAAACTGAGCAGGACAAGCTT 1017
Query 1087 CAAGACCAGATTTCAACTGCTAGGGCAAACCTTTCCTCGGTTCAGATTGATAGGGAATTG 1146
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1018 CAAGACCAGATTTCAACTGCTAGGGCAAATCTTTCCTCGGTTCAGATTGATCGGGAATTG 1077
Query 1147 AAGGTGAAGATCTCTAGAGTTTGTTCAGAGCTCAATGTTGATGGGTTGAGAGGAGACATA 1206
||||||||||||||||| || ||||||||||||||||| || ||||||||||| ||||||
Sbjct 1078 AAGGTGAAGATCTCTAGGGTATGTTCAGAGCTCAATGTCGACGGGTTGAGAGGGGACATA 1137
Query 1207 GTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCA 1266
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 GTGACTAACAGAGCAGCAAAAGCACTTGCAGCTCTCAAAGGGAAAGATCGAGTAACTCCA 1197
Query 1267 GATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTG 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GATGATGTTGCAACCGTTATCCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTG 1257
Query 1327 GAATCTATTGATTCAGGAGTTCTAGTTTCCGAGAAGTTCGCCGAGATTTTCAGCTGAATA 1386
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1258 GAATCTATCGATTCGGGAGTTCTAGTTTCCGAGAAGTTTGCCGAGATTTTCAGCTGAATA 1317
Query 1387 GGAGATTCGATTCTGTGATCATTTTTCTTTAACTTTTTCTACTCTGTAAACGGTGAGAAG 1446
|||||||||||||||||||| |||| ||| ||||||| ||||||||||||| ||||||||
Sbjct 1318 GGAGATTCGATTCTGTGATCCTTTT-CTT-AACTTTTCCTACTCTGTAAACAGTGAGAAG 1375
Query 1447 AACCAAAACTATAAACAGGCAAATCTGATTGAATATAGAGTCTATGCT 1494
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AACAAAAACTATAAACAGGCAAATCTGATTGAATATAGAGTCTATGCT 1423
> Ahg494386 jgi|Araly1|494386|fgenesh2_kg.8__202__AT5G45930.1
Length=1361
Score = 1020 bits (552), Expect = 0.0
Identities = 1060/1299 (82%), Gaps = 59/1299 (5%)
Strand=Plus/Plus
Query 102 CAC-AAAAATGGCGtctcttcttggaacatcttcttctgcaatctgggcttctccttc-a 159
||| || ||||||||||||||| ||| ||||| ||||| |||||| ||| || ||
Sbjct 66 CACTAACAATGGCGTCTCTTCTCGGAGCATCTCCTTCTTCAATCTTCACTT-GCCCTCGT 124
Query 160 ctctcttctccttcctcaaaaccttcct-cctccCCCATTTGCTTCAGG-CCA-GGAAAA 216
|| |||||||||||||||| | ||| || |||||| | |||||| || ||| ||| ||
Sbjct 125 CTTTCTTCTCCTTCCTCAACATCTT-CTATCTCCCCTGTCTGCTTC-GGACCAGGGAGAA 182
Query 217 TTGTTTGGAAGCAAGTTAAATGCAGGAATCCAAATAAGGCCAAAGAAGAACAGGTCTCGT 276
|| | | | | ||| ||| | ||| | ||| |||||||||||||| ||||||
Sbjct 183 TT-TGT-G--G-AAG---AAT-C--CAATTC-AAT----CCAAAGAAGAACAGATCTCGT 226
Query 277 TACCATGTTTCGGTTATGAATGTAGCCACTGAAATCAACTCTACTGAACAAGTAGTAGGG 336
||||||||||| ||||||||||| || || || ||||||| | |||||||| | | |
Sbjct 227 TACCATGTTTCTGTTATGAATGTCGCTACAGAGATCAACTATGTTGAACAAG--G-AAAG 283
Query 337 AAGTTTGATTCAAA-GAAGAGTGCGAGACCGGTTTATCCATTTGCAGCTATAGTAGGGCA 395
|||||||||||||| ||| |||||||| ||||||||||||||||| ||||| || || ||
Sbjct 284 AAGTTTGATTCAAAGGAA-AGTGCGAGGCCGGTTTATCCATTTGCTGCTATTGTTGGACA 342
Query 396 AGATGAGATGAAGTTATGTCTTTTGTTGAATGTTATTGATCCAAAGATTGGTGGTGTTAT 455
||||||||||||| |||| |||||||| ||||| ||||| || |||||||| ||||| ||
Sbjct 343 AGATGAGATGAAGCTATGCCTTTTGTTAAATGTGATTGACCCGAAGATTGGCGGTGTGAT 402
Query 456 GATTATGGGAGATAGAGGAACTGGAAAATCTACAACTGTTAGATCATTAGTTGATCTG-T 514
||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||| || |
Sbjct 403 GATAATGGGAGATAGAGGAACTGGTAAATCAACAACTGTTAGATCTTTAGTTGATTTGCT 462
Query 515 TACCTGAGATTAATGTAGTTGCAGGTGACCCGTATAACTCGGATCCGATAGATCCTGAGT 574
| |||||||| | || ||||| ||||| ||||||||||| || |||| |||||| ||||
Sbjct 463 T-CCTGAGATCACGGTTGTTGCTGGTGATCCGTATAACTCAGACCCGAGAGATCCCGAGT 521
Query 575 TTATGGGTGTTGAAGTAAGAGAGAGAGTTGAGAAA-GGAGAGCAAGTT-CCTGTTATTGC 632
|||||| |||||||| |||| |||| | ||| ||||| ||| || || ||||| |
Sbjct 522 GTATGGGAAAGGAAGTAAGGGAGAAAGTTCA-AAAGGGAGAACAA-TTGCCGGTTATCGA 579
Query 633 GACTAAGATTAATATGGTTGATCTTCCTTTGGGTGCAACAGAAGATAGAGTTTGTGGAAC 692
|| || || |||||||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 580 AACCAAAATCAATATGGTTGATCTTCCTTTAGGTGCTACGGAAGATAGAGTTTGCGGAAC 639
Query 693 CATCGATATCGAAAAGGCTTTGACAGAAGGTGTAAAAGCCTTTGAGCCTGGTTTGTTGGC 752
|| ||||||||||| || || || |||||||| || || ||||||||||| | | ||
Sbjct 640 TATTGATATCGAAAAAGCCTTAACTGAAGGTGTTAAGGCGTTTGAGCCTGGACTACTAGC 699
Query 753 TAAAGCTAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTGGT 812
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 700 TAAAGCCAATAGAGGGATTCTTTATGTTGATGAAGTTAATCTCTTGGATGATCATTTAGT 759
Query 813 TGATGTTCTT-TTGGATTCAGCTGCTTCTGGTTGGAATACGGTTGAGAGAGAAGGGATTT 871
|||||||||| ||| |||| ||||| || |||||||| || ||||| |||||||||||||
Sbjct 760 TGATGTTCTTCTTG-ATTCTGCTGCATCGGGTTGGAACACTGTTGAAAGAGAAGGGATTT 818
Query 872 CGATTTCTCACCCGGCGAGGTTTATCTTGATCGGTTCAGGAAATCCGGAAGAAGGAGAGC 931
||||||||||||| || |||||||| | || |||||||||||||| |||||||||||||
Sbjct 819 CGATTTCTCACCCTGCTCGGTTTATCCTAATTGGTTCAGGAAATCCTGAAGAAGGAGAGC 878
Query 932 TTAGGCCACAGCTTCTTGATCGGTTTGGTATGCATGCACAAGTAGGGACGGTTAGAGATG 991
|||| ||||||||||||||| ||||||||||||| || ||||||||||| ||||| || |
Sbjct 879 TTAGACCACAGCTTCTTGATAGGTTTGGTATGCACGCGCAAGTAGGGACAGTTAGGGACG 938
Query 992 CTGATTTACGGGTCAAGATTGTTGAAGAGA-GAGCTCGTTTCGATAGTAACCCAAAGGA- 1049
| || || | ||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 939 CCGAGCTAAGAGTCAAGATTGTTGAAGA-ACGAGCTCGTTTTGATAGTAACCCAAAGGAG 997
Query 1050 TTTCCGTGACA-CTTA-CAAAACCGAGCAGGAC--AAGCTTCAAGACCAGATTTCAACTG 1105
|||| | || | |||| ||| | || || || ||||||||||| |||||| ||||||
Sbjct 998 TTTC-GAGA-ATCTTATCAAG-CAGAACA--ACTGAAGCTTCAAGAGCAGATTACAACTG 1052
Query 1106 CTAGG-GCAAACCTTTCCT-CGGTTCAGATTGAT-AGGGAATTGAAGGTGAAGATCTCTA 1162
| || |||| | |||| | | |||||||||||| | | | ||||| |||||||||||||
Sbjct 1053 CAAGAAGCAATC-TTTC-TGCAGTTCAGATTGATCAAG-ATTTGAAAGTGAAGATCTCTA 1109
Query 1163 GAGTT-TGTTCAGAGCTCAATGTTGATGGGTTGAGAGGAGACATAGTGACTAA-CAGAGC 1220
|| | ||| | ||||| | ||||| || |||||||||||||| |||| ||| ||||||
Sbjct 1110 -AGGTCTGTGCTGAGCTGGACGTTGACGGATTGAGAGGAGACATGGTGA-TAAACAGAGC 1167
Query 1221 AGCAAAAGCACTTGCAGCTCTCAAAGGAAAAGATCGAGTAACTCCAGATGATGTTGCAAC 1280
|| | ||||||||| || ||| |||||| ||||| ||| || | || ||||||| |
Sbjct 1168 GGCTAGAGCACTTGCGGCACTCCAAGGAAGAGATCAAGTTACAGCTGAAGATGTTGGTAT 1227
Query 1281 CGTTATCCCTAACTGCTTAAGGCACCGTCTGAGGAAAGATCCACTGGAATCTATTGATTC 1340
||||| || ||||||||| | ||| | || || ||||||||| |||| ||||| |||||
Sbjct 1228 TGTTATACCGAACTGCTTACGACACAGACTCAGAAAAGATCCATTGGAGTCTATGGATTC 1287
Query 1341 AGGAGTTCTAGTTTCCGAGAAGTTCGCCGAGATTTTCAG 1379
||| |||| ||| ||||||||||| |||| |||||||
Sbjct 1288 GGGAATTCTCGTTACCGAGAAGTTCTACGAGGTTTTCAG 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5