BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18490.1
Length=2454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493010 jgi|Araly1|493010|fgenesh2_kg.7__2443__AT4G18490.1 2905 0.0
> Ahg493010 jgi|Araly1|493010|fgenesh2_kg.7__2443__AT4G18490.1
Length=2323
Score = 2905 bits (1573), Expect = 0.0
Identities = 1786/1887 (95%), Gaps = 21/1887 (1%)
Strand=Plus/Plus
Query 1 AAGTCAAATCATTCGGAGCCCAGCTAATTTCAAAATCTCCCCCCTTCGAGTTCCGTCGGC 60
||||||||| ||||| ||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct 1 AAGTCAAATAATTCGCAGCCCAGCTAA-TTCAAAATCTTCCCCCTTCGAATTCCGTCGGC 59
Query 61 GA--TTTTCTCTCCGGTGTCGTCGTCTTGTTGCCGTTGAACGTTTATCGTTAGCGCCTAC 118
|| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 GATTTTTTCTCTCCGGTGCCGTCGTCTTGTTGCCGTTGAACGTTTATCGTTACCGCCTAC 119
Query 119 TACATATACAACTG-CAAAGCGATTCAATCGTTGGTTTTCAAGAGTGATACTGAACAGAT 177
|| ||||||||| | |||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 120 CGCAGATACAACTGTC-AAGCGATTCAATCGCTGGTTTTCAAGGGTGAGACTGAACAGAT 178
Query 178 ATTGCCATGTCTGCACCTGCTAAAAGAAGTTCTACAGATACTCAGGACAAAGATCTAATG 237
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 179 TTTGCCATGTCTGCACCTGCTAAAAGAAGTTCTACAGATACTCAGGAGAAAGATCTAA-- 236
Query 238 CTCGCTGCAGATAAAGACATGGAAAAGGATACATGGAACTTCAAGTCAATGACAGATGAT 297
| ||| | ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 237 -T-GCT-C-GATAAAGACATGGAAAACGATACATGGAACTTTAAGTCAATGACAGATGAT 292
Query 298 GATCCAATGGATTTTGGCTTTGGCTCACCAGCAAAAAATAAGAAGAATGCCTTCAAGTTG 357
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 293 GATCCAATGGATTTTGGCTTTGACTCACCAGCAAAAACTAAGAAGAATGCCTTCAAGCTG 352
Query 358 GATATGGGTTTCGATCTGGATGGAGATTTTGGATCATCATTTAAAATGGACATGCCAGAC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GATATGGGTTTCGATCTGGATGGAGATTTTGGATCATCATTTAAAATGGACATGCCAGAC 412
Query 418 TTTGATTTCTCAAGCCCAGCCAAGAAAACCACAAAAACGAAAGAGACCTCTGATGATAAA 477
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 413 TTTGATTTCTCAAGCCCAGCCAAGAAAACCACAAAAACGAAAGAAAGCTCTGATGATAAA 472
Query 478 CCTAGTGGAAATTCAAAACAGAAAAAGAATCCATTTGCCTTCTCTTACGACTTTGATGCG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CCTAGTGGAAATTCAAAACAGAAAAAGAATCCATTTGCCTTCTCTTACGACTTTGATGCG 532
Query 538 TTAGACGACTTTGATCTTGGTTCAAGCCCCCCGAAGAAGGGAAGCAAGACTACGACCAAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTAGACGACTTTGATCTTGGTTCAAGCCCCCCGAAGAAGGGAAGCAAGACTACGACCAAG 592
Query 598 AGCATGGACTGTGAAGAAATTTGTGCAAGTAGTAAGAGT-GATAAGTCAGACGATTTGGA 656
| ||||||||| ||||||||| ||||||||| ||| || ||||||||||||||||||||
Sbjct 593 ACCATGGACTGCAAAGAAATTTCTGCAAGTAGAAAG-GTTGATAAGTCAGACGATTTGGA 651
Query 657 CTTTGGTCTAGACTTACCAATAACTAGACAAGTTCCCTCCAAGGCAAACACAGATGTTCA 716
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 652 CTTTGGTCTAGACTTACCAATAACTAGACAAGCTCCCTCCAAGGCAAATACAGATGTTCA 711
Query 717 GGCAAAAGCTTCAGCTGAAAAAGAGAGCCAAAATTACAAGACTACAGATACTCTGGTTGT 776
|||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||
Sbjct 712 GGCAAAAGCTTCAGCTGAAAAAGAGAACCAAAATTCCAAGACTACAGATACTATTGTTGT 771
Query 777 TAATAAGAGCAAAAACTCGAATCAAGCTGCATTAGAGAGCATGGGAGATTTTGAGGCGGT 836
||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 772 TAATAAGAGCACACACTCGAGTCAAGCTGCATTAGAGAGCATGGGAGACTTTGAGGCGGT 831
Query 837 GGAATCACCTCAGGGTTCAAGaaaaaaaGCCTCACAAACTCATACAATGTGTGTGCAACC 896
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 832 GGAATCACCTCAGGGTTCAAGAAAAAAAACCTCACAAACTCATACATTGTGTGTGCAACC 891
Query 897 TCAATCCGTAGATACTTCACCATTGAAGACATCATGTTCAAAGGTTGAAGAAAAGAATGA 956
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| | ||||
Sbjct 892 TCAATCCGTAGATACTTCACCATTAAAGACATCATGTTCAATGGTTGAAGAAATGGATGA 951
Query 957 ACCATGTCCTTCAAATGAGACCATAGCACCCTCGCCATTACATGCTTCTGAGATTGCACA 1016
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 952 ACCATGTCCTTCAAATGAGACCGTAGCACCCTCGCCATTACATGCTTCTGAGATTGCACA 1011
Query 1017 TATTGCAGTAAACAGAGAAACCAGTCCAGATATCCATGAACTCTGCAGGTCTGGTACAAA 1076
|| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1012 TACTGCAGTTTACAGAGAAACCAGTCCAGATATCCACGAACTCTGCAGGTCTGGTACAAA 1071
Query 1077 AGAAGACTGTCCTATAGATCCAGAAAATGCCAACAAGAAAATGATTACCACCATGGAATC 1136
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1072 AGAAGACTGTCCTAGAGATCCAGAAAATGCCAACAAGAAAATGATTTCCACCATGGAATC 1131
Query 1137 AAGTTATGAGAAGATAGAACAGACTTCACCAAGCATCTCATCTCATTTATGTTCAGACAA 1196
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1132 AAGTTATGAGAAGATAGAACAGATTTCACCAAGCATCTCATCTCAGTTATGTTCAGACAA 1191
Query 1197 GATAGAACATCAACAGGAAGAAATGGGTACAGACACTCAGGCAGAAATACAGGATAACAC 1256
||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1192 GATAGGACATCAACAGGAAGAAATGAGTACAGACACTCAGGCAGAATTACAGGATAACAC 1251
Query 1257 TAAAGGAGCACTGTATAACTCAGATGCTGGACATTCTCTAACAACCCTCTCAGGCAAAAT 1316
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TAAAGGAGCACTGTGTGACCCAGATGCTGGACATTCTCTAACAACCCTCTCAGGCAAAAT 1311
Query 1317 ATCACCAGGCACTCGTACAAGCCAAACTGCCAAGGTACAAGATTTGAGTGAAAAGCTACC 1376
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ATCACCAGGCACTCGTCCAAGCCAAACTGCCAAGGTACAAGATTTGAGTGAAAAGCTACC 1371
Query 1377 ACTGGATCCGTCCCACAGCATGGCAGGGCTCGATAATTTGAGGGCCATGCAAAACAAAGA 1436
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1372 ACTGGATCCGTCCCACAGCATGCCAGGGCTCAATAATTTGAGGGCCATGCAAAACAAAGA 1431
Query 1437 TTTAGGACTTATCAGATCCAGATTTTTTAAGAAGCCAGAAAAACCTGAATCCCATGTGCT 1496
|| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1432 TTCAGGACTTATCAGATCCAGATTTTTTAATAAGCCAGAAAAACCAGAATCTCATGTGCT 1491
Query 1497 TGAGTCTTCTCCAATTGAAACAGAGATTCAGCCAGTTATCCGAGAAAACATTGGGTCAAG 1556
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1492 TGAGTCTTCTCCAATTCAAACAGAGATTCAGCCAGTTACCCGAGAAAACATTGGGTCGAG 1551
Query 1557 TTTGAACCCTACAAATGATACGAG---TTCTCATGAAAAGATCATCCACAAGGACCATTC 1613
|||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 1552 TTTGAACCCTACAAATGATAGGAGCAGTTCTCATGAAAAGATCATCCACAAGGCCCATTC 1611
Query 1614 AAATGGCAAGACTGTAGAAAATGTGGCTGGACAGATGGATCATTTAAAGCTGCAAGCTAA 1673
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AAATGCCAAGACTGTAGAAAATGTGGCTGGACAGATGGATCATTTAAAGCTGCAAGCTAA 1671
Query 1674 AAATACAACTAGAGAGAAGTCCATCTTGCAGATCAATATAAGCTCAAAACTTGATGCTTC 1733
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1672 AAATACAATTAGAGAGAAGTCCATCTTGCAGATCAATATAAGCTCAAAACTCGATGCTTC 1731
Query 1734 TAGCTTGACTCAGAAACTAAGCAATCATTTGAGTTCCGGAG-TCGAATCTTTGCAGAAGC 1792
|||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 1732 TAGCTTGACTCAGAAACTAAGCAAACATTTGAGTTCCGGAGCT-GAATCTTTGCAGAAGC 1790
Query 1793 CCAAGTTGA-ATTCTCTGGGAAGGCCTAAACTTGGAAATATTATGGCTGATCTGCGTGCA 1851
|||| ||| || |||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1791 CCAAAATGATAT-CTCTCGAAAGGCCTAAACTTGGAAATATTACGGCTGATCTGCGTGCA 1849
Query 1852 GTGAAAACTCAAAGGACCATTGGAGGA 1878
|||||||||||||||| | ||| ||||
Sbjct 1850 GTGAAAACTCAAAGGAACGTTG-AGGA 1875
Score = 281 bits (152), Expect = 1e-74
Identities = 163/168 (97%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 2162 GCCAAGAGAGTAGAATAGATACTAAG-ACGACCAAGGAGCCTGTCAAGGAAAGTCCACAG 2220
||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||
Sbjct 1962 GCCAAGAGAGTAGAATAGATAAT-AGTACAACCAAGGAGCCTGTCAAGGAAAGTCCACAG 2020
Query 2221 ACTAAGTCTCATTACCAGAACATAAACATGGCAAATCTGGAAATCCCAATCACGGAGAAT 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2021 ACTAAGTCTCATTACCAGAACATAAACATGGCAAATCTGGAAATCCCAATCACGGAGAAT 2080
Query 2281 GCTGACAACATAGAGAAAGCTGAAGCATATACAAAAGAACTCGAGAAT 2328
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2081 GCTGACAACATAGAGAAAGCTGAAGCATATACAAAAGAACTCGACAAT 2128
Score = 217 bits (117), Expect = 4e-55
Identities = 123/126 (98%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 2328 TATTTGCAACATCCTGAAGAAGAAACATGAGGAAGCAAAAGAGTTACTTGTCCGTGCTGT 2387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 TATTTGCAACATCCTGAAGAAGAAACATGAGGAAGCAAAAGAGTTACTTGTCCGTGCTGT 2256
Query 2388 AGTAGACAACAATAAGTTACTGATGCTCAACCATCCTTTATATGAAGACCAGATATCCTT 2447
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2257 AGTAAACAACAATAAGCTACTGATGCTCAACCATCCTTTATATGAAGACCAGATATCCTT 2316
Query 2448 TTTATA 2453
|| |||
Sbjct 2317 TTCATA 2322
Score = 78.7 bits (42), Expect = 2e-13
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 2113 AGGAACGTTGAGGAGCTCACACATAGAGCTGTGCAAGGAAAG 2154
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1862 AGGAACGTTGAGGAGCTCACACATAGAGCTGTGCAAGGAAAG 1903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92483114860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5