BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18501.1

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493009 jgi|Araly1|493009|fgenesh2_kg.7__2442__AT4G18501.1         580    3e-165


> Ahg493009 jgi|Araly1|493009|fgenesh2_kg.7__2442__AT4G18501.1
Length=484

 Score =  580 bits (314),  Expect = 3e-165
 Identities = 446/504 (88%), Gaps = 31/504 (6%)
 Strand=Plus/Plus

Query  1    TTTCCAAATCTGCTTCAAAGTCCCTCCTATTCACACACTTCATATACATCTT-CTCAGTT  59
            |||||||||| | ||||||||||||| |||||||||||||||||||||| || |||| ||
Sbjct  1    TTTCCAAATCCGGTTCAAAGTCCCTCTTATTCACACACTTCATATACAT-TTCCTCACTT  59

Query  60   CCTCCTTCCATCCTCAAATCCATACAtctctccctctctctctctctctctttctccctt  119
            ||||||||||||||||||| |   |||||||  |||||| | ||| || | || |  |||
Sbjct  60   CCTCCTTCCATCCTCAAAT-C---CATCTCT--CTCTCT-T-TCT-TC-C-TT-T--CTT  105

Query  120  tctctATCTACTCCATCAATGGCGGTTCTAGATTCAAAGCCTCAAGAAAACAACAAAGAG  179
            |||||| |||   ||||||||||| ||||| ||||||| ||||||||  |||||||||||
Sbjct  106  TCTCTA-CTA---CATCAATGGCGATTCTATATTCAAATCCTCAAGACGACAACAAAGAG  161

Query  180  -A-A--T--GTCTCACCCTCAGAGATGGTCACGATTGCTGTCAAATCTCTGGATTCCTCA  233
             | |  |   |||||||||||||||||||||| ||| |||||||| |||| ||||| |||
Sbjct  162  AATATCTCACTCTCACCCTCAGAGATGGTCACCATTTCTGTCAAACCTCTAGATTCTTCA  221

Query  234  TCCATTGATAAAGGCAAAACCCAAATCAGAATAAGAAGaaaaaaaTCTAGGAAGCCTCTT  293
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  222  TCCATTGATAAAGACAAAACCCAAATCAGAATAAGAAGAAAAAGATCTAGGAAGCCTCTT  281

Query  294  CAAGACATCACCAACCTCTTTGTCTCGTCATCACCATTGTCCTCTTCGTTTCTGATCCGT  353
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  282  CAAGACATCACCAACCTCTTTGTCTCGTCATCACCATTGTCTTCTTCGTTTCTGATTCGT  341

Query  354  CACATTCCCTCTTCTTCATCTCTATCACTTGATCCCAAATGCATGAAGAGAAGATCTTGT  413
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  342  CACATTCCCTCTTCTCCATCTCTATCACTTGATCCCAAATGCATGAAGAGAAGATCTGGT  401

Query  414  GTTTCCCTCAAGCCTGCTACTTCTTCA---ACCTTCTCTTGTAGAAATTTCAGATGattt  470
             ||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||
Sbjct  402  CTTTCCCTCAAGACTGCTACTTCTTCTTCTACCTTCTCTTGTAGAAATTTCAGATGATTT  461

Query  471  ttatat-tttggaaaatgttgttt  493
            || | | ||||||||  |||||||
Sbjct  462  TTTT-TCTTTGGAAACCGTTGTTT  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20451395704


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5