BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18510.1

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493008 jgi|Araly1|493008|fgenesh2_kg.7__2441__AT4G18510.1         656    0.0  


> Ahg493008 jgi|Araly1|493008|fgenesh2_kg.7__2441__AT4G18510.1
Length=531

 Score =  656 bits (355),  Expect = 0.0
 Identities = 482/539 (89%), Gaps = 25/539 (5%)
 Strand=Plus/Plus

Query  1    GCAACGAGAAAAACC-GTCCTTGGTGACAACTCATGCTTGCACTCAAGCCTTAAGCTAGC  59
            |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    GCAACGAG-AAAACCTGTCCTTGGTGACAACTCATGCTTGCACTCAAGCCCTAAGCTAGC  59

Query  60   TAAACCTATCTCGCGCACTACTAG--A--ATTCAAATAAAACTCTATAAATAGAAACCCT  115
            ||||||||||| |  |||||||||  |  |||||||||||||||||||||||||||||||
Sbjct  60   TAAACCTATCT-G-TCACTACTAGAAACCATTCAAATAAAACTCTATAAATAGAAACCCT  117

Query  116  CATGAGATCTCTTCTTTCCTCATATACACTCATACACACCACGTGAACAATCTATCTCTC  175
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  118  CATGAGATCTCTTCTTTTCTCATATACACTCATACACACCACGTGAACAATCTCTCTCTC  177

Query  176  TTTCTATTGCTTTTCTATATATACAGAAACTAATTAATTGTA-TCTGTAATGGCTAAGTT  234
            |||||||| | ||||||||| ||  ||||||||||||||||| | |||||||||||||||
Sbjct  178  TTTCTATTACCTTTCTATAT-TA--GAAACTAATTAATTGTAAT-TGTAATGGCTAAGTT  233

Query  235  AAGCTTCACTTTCTGCTTCTTGTTGTTTCTTCTGTTATCCTCAATCGCCGCTGGAAGCCG  294
            |||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||| ||
Sbjct  234  AAGCTTCAGTTTATGCTTCTTGTTGGTTCTTCTGTTATCCTCAATCGCTGCTGGAAGTCG  293

Query  295  CCCTCTTGAGG-GGGCTCGGGTCGGGGTGAAGGTGAGAGGCCTAAGCCCTTCTATCGAGG  353
            ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||| ||||
Sbjct  294  CCCTCTT-AGGCGGGCTCCAGTCGGGGTGAAGGTGAGAGGCCTAAGCCCTTCTATTGAGG  352

Query  354  CTACGAGTCCGACTGTAGAGGATGATCAAGCTGCGGGTAGC--CA-------TGGGAAAT  404
            |||| |||||||||| |   |||||||||||||||||||||  ||       ||||||||
Sbjct  353  CTACAAGTCCGACTGCATCTGATGATCAAGCTGCGGGTAGCAGCAGCAGCCATGGGAAAT  412

Query  405  CTCCAGAGCGGTTAAGCCCAGGAGGACCCGACCCACAACATCACTAGTTATTTTGTGTTT  464
            | ||||| ||||| ||||| |||||||||||||| |||||||| ||| ||||| ||||||
Sbjct  413  CGCCAGAACGGTTGAGCCCTGGAGGACCCGACCCGCAACATCATTAGATATTTAGTGTTT  472

Query  465  T-TCAATTTCTTCGACATGTTTATTACTTATCAATAATTTGGTTGCAACGAAGCTGttt  522
              ||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct  473  CCTCAATTTCTTCGAGATGATTATTACTTATCAATAATTTGGTTGCAATGAATCTGTTT  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20184306581


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5