BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18520.1 Length=2085 Score E Sequences producing significant alignments: (Bits) Value Ahg946342 jgi|Araly1|946342|scaffold_702571.1 2961 0.0 Ahg314676 jgi|Araly1|314676|fgenesh1_pm.C_scaffold_1003456 71.3 3e-11 > Ahg946342 jgi|Araly1|946342|scaffold_702571.1 Length=1894 Score = 2961 bits (1603), Expect = 0.0 Identities = 1805/1903 (95%), Gaps = 12/1903 (1%) Strand=Plus/Plus Query 76 CTTCTTCTCTTTCTCCATCGCCGACAATGTTTTCGTTATCGTTAATCCAACCGCGTCTCC 135 |||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1 CTTCTTCTCTATCTCCATCGCCG---ATGTTTTCGTTATCGTTAATTCAACCGCGTCTCC 57 Query 136 GGATTTCAGAGATTCCGGTGACTCAATCCTACAAATCTCCGACGATATGTTACAGTAGCG 195 | ||||| ||||||||||| || ||| ||| |||||| |||||||||||||||||||||| Sbjct 58 GTATTTCGGAGATTCCGGTAACGCAAACCTTCAAATCACCGACGATATGTTACAGTAGCG 117 Query 196 ATTCAAGAACTAAGCGAGAGGAACAGAGACACGTGAGATTACCTGGGTTTCGATTAGTTT 255 ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| Sbjct 118 ATTCAAGAACTAAGCGAGAGGAACAGAGACACGGGAGATTGTCTGGGTTTCGACTAGTTT 177 Query 256 CTGGAAAGAGAGCATCTTTCGATTCGGGTTTTAGTGGTTTCA-AAGGAGAGAATGTGAAT 314 ||||||||||| |||||||||||| ||||||||||| ||| | ||||||||||||||||| Sbjct 178 CTGGAAAGAGATCATCTTTCGATTTGGGTTTTAGTGATTT-ACAAGGAGAGAATGTGAAT 236 Query 315 CAGGATGATTCGTCTTCTTTCGATAGCGAAAGAGTTGATTATGCTCTGTTAGCGGAGTGG 374 || ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 237 CACGATGATTTATCTTCTTTCGATAGCGAACGAGTGGATTATGCTCTGTTAGCGGAGTGG 296 Query 375 CTACAGTCTTCTAATGGGATGCGACTCATTAAAAGGATCCATGCGATGGCGTTGAAGTGT 434 |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 297 CTACAGTCTTCTAATGGGATGCGACTTATTAAAAGGATTCACGCGATGGCGTTGAAGTGT 356 Query 435 TTTGATGATCAAGTTATCTATTTTGGGAACAATTTGATTAGTTCTTGTGTTAGACTTGGT 494 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 357 TTTGATGATCAAGTTATCTATTTTGGGAATAATTTGATTAGTTCTTGTGTGAGACTTGGG 416 Query 495 GATTTGGTTTATGCACGTAAAGTGTTCGACAGTATGCCTGAGAAAAATACTGTTACTTGG 554 ||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||| Sbjct 417 GATTTGGTTTATGCACGTAAAGTGTTCGATAATATGCCTGACAGAAATACTGTTACTTGG 476 Query 555 ACTGCTATGATTGATGGGTATTTGAAGTATGGTCTTGAGGATGAGGCTTTTGCACTGTTT 614 ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 477 ACTGCGATGATTGATGGGTATTTGAAGTTTGGTCTTGAGGATGAGGCTTTTGCACTGTTT 536 Query 615 GAGGATTATGTGAAGCATGGAATACGTTTTACGAACGAGAGGATGTTTGTGTGTTTGTTG 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GAGGATTATGTGAAGCATGGAATACGTTTTACGAACGAGAGGATGTTTGTGTGTTTGTTG 596 Query 675 AATCTGTGTAGTAGGAGAGCAGAGTTTGAG-TTAGGGAGACAAGTTCATGGTAATATGGT 733 |||||||||||||||||| ||||||||||| || |||||||| || |||||||||||||| Sbjct 597 AATCTGTGTAGTAGGAGATCAGAGTTTGAGCTT-GGGAGACAGGTACATGGTAATATGGT 655 Query 734 GAAAGTTGGAGTGGGGAATCTCATTGTGGAGAGTTCTCTTGTTTATTTTTATGCGCAATG 793 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GAAAGTTGGAGTGGGAAATCTCATTGTGGAGAGTTCTCTTGTTTATTTTTATGCGCAATG 715 Query 794 CGGTGAATTGACAAGTGCGTTACGAGCTTTTGATATGATGGAGGAGAAAGATGTGATATC 853 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 CGGTGAATTGACGAGTGCGTTACGAGCTTTTGATATGATGGAGGAGAAAGATGTGATATC 775 Query 854 TTGGACTGCTGTTATATCGGCGTGTTCGAGAAAAGGGCAT-GGAATTAAAGCTATAGGCA 912 |||||| || ||||| ||||| ||||| || ||||||||| |||| |||||| || | || Sbjct 776 TTGGACAGCGGTTATTTCGGCTTGTTCAAGGAAAGGGCATGGGAA-TAAAGCCATTGTCA 834 Query 913 TGTTTATCGGAATGTTGAATCACTGGTTTTTGCCTAACGAGTTTACGGTGTGCAGTATTT 972 ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| Sbjct 835 TGTTTATCGGAATGTTGAATCACGGGTTTTTACCTAACGAGTTTACGGTATGCAGTATTT 894 Query 973 TGAAGGCTTGTAGTGAGGAGAAAGCGTTAAGATTCGGAAGGCAAGTACACAGCTTGGTTG 1032 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | Sbjct 895 TGAAGGCTTGTAGTGAGGAGAAAGCGATAAGATTTGGAAGGCAAGTACACAGCTTGGTGG 954 Query 1033 TTAAGAGGATGATAAAGACAGATGTTTTTGTGGGAACTTCGCTGATGGACATGTATGCTA 1092 |||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 955 TTAAAAGGATGATTAAGACAGATGTTTTCGTAGGAACTTCGCTGATGGACATGTATGCTA 1014 Query 1093 AGTGTGGGGAGATTTCTGATTGCAGAAAAGTGTTTGATGGAATGAGTAATAGAAACACGG 1152 | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1015 AATGCGGGGAGATTTCTGATTGCAGAAAAGTGTTTGATGGAATGAGCAATAGAAACACGG 1074 Query 1153 TCACATGGACTTCGATTATAGCTGCTCATGCTCGGGAAGGTTTTGGTGAGGAAGCTATCA 1212 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1075 TCACGTGGACTTCGATTATAGCTGCACATGCTCGGGAAGGTTTTGGTGAGGAAGCTATCA 1134 Query 1213 GCCTCTTCCGGATAATGAAGAGGCGGCATTTGATTGCTAACAATTTGACAGTAGTAAGCA 1272 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 GCCTCTTTCGGGTAATGAAGAGGCGGCATTTGATTGCTAACAATTTGACAGTAGTAAGCA 1194 Query 1273 TTCTTAGAGCGTGTGGATCTGTTGGAGCTTTATTGTTGGGGAAGGAACTTCATGCACAGA 1332 | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct 1195 TCCTTAGAGCGTGTGGATCTGTTGGGGCTTTATTGTTAGGGAAGGAACTTCATGCTCAGA 1254 Query 1333 TTATCAAGAATTCGATCGAAAAGAATGTCTATATAGGAAGTACTTTGGTGTGGCTGTATT 1392 | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1255 TAATCAAGAATTCGATAGAAAAGAATGTCTATATAGGAAGTACTTTGGTTTGGCTGTATT 1314 Query 1393 GTAAATGCGGAGAATCTCGTGACGCTTTCAATGTTCTCCAGCAATTGCCATCTAGAGATG 1452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 GTAAATGCGGAGAATCTCGTGACGCTTTCAATGTTCTCCAGCAATTGCCATCTAGAGATG 1374 Query 1453 TGGTTTCATGGACCGCTATGATCTCTGGATGTTCGAGCTTAGGACATGAATCGGAAGCGC 1512 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1375 TGGTTTCATGGACCGCTATGATCTCTGGATGTTCGAGCTTAGGACACGAATCAGAAGCGC 1434 Query 1513 TAGACTTCTTGAAAGAGATGATTCAAGAAGGTGTAGAGCCAAACCCATTTACATACTCCT 1572 |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1435 TAGACTTCTTGAAAGATATGATTCAAGAAGGTGTAGAGCCAAATCCATTTACGTACTCCT 1494 Query 1573 CGGCTTTAAAAGCTTGTGCGAATTCAGAATCTCTTCTTATCGGTAGATCAATCCATTCCA 1632 ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1495 CGGCTTTAAAAGCCTGTGCGAATTCAGAATCTCTTCTAATCGGCAGATCAATCCATTCCA 1554 Query 1633 TTGCAAAGAAGAATCATGCTCTATCAAATGTCTTTGTGGGAAGTGCTTTGATTCACATGT 1692 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1555 TTGCAAAGAAGAATCATGCTCTATCAAATGTCTTTGTGGGAAGTGCTTTGATTCATATGT 1614 Query 1693 ATGCAAAATGTGGATTTGTCTCGGAAGCTTTTCGGGTTTTTGACAGTATGCCTGAGAAGA 1752 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1615 ATGCAAAATGTGGATTTGTCTCAGAAGCTTTTCGGGTTTTCGACAGTATGCCTGAGAAGA 1674 Query 1753 ACTTGGTTTCATGGAAGGCGATGATAATGGGTTATGCGAGGAATGGGTTTTGCAGGGAAG 1812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1675 ACTTGGTTTCATGGAAGGCGATGATAATGGGTTATGCGAGGAATGGGTTTTGCAGGGAAG 1734 Query 1813 CATTGAAGCTAATGTATAGAATGGAGGCAGAGGGATTTGAAGTTGATGATTATATATTTG 1872 ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 1735 CATTGAAGCTAATGTATAGAATGGAAGCAGAGGGATTTGAGGTGGATGATTATATATTTG 1794 Query 1873 CAACAATTCTCTCTACTTGTGGAGATATTGAGCTCGATGAAGCTGTTGAATCTTCTGCAA 1932 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1795 CAACAATTCTCTCTACTTGTGGAGATATTGAGCTCGATGAAGCTG---AATCTTCTGCAA 1851 Query 1933 CTTGTTACTTGGAGACATCTTGATCTTTCTTCTTTAGAATCTC 1975 |||||||||||||||| |||||||||||||||||||||||||| Sbjct 1852 CTTGTTACTTGGAGACCTCTTGATCTTTCTTCTTTAGAATCTC 1894 > Ahg314676 jgi|Araly1|314676|fgenesh1_pm.C_scaffold_1003456 Length=2487 Score = 71.3 bits (38), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 2/51 (4%) Strand=Plus/Plus Query 528 ATGCCTGAGAAAAATACTG-TTACTTGGACTGCTATGATTGATGGGTATTT 577 |||||||||| |||| || ||||||||||||||||||||||||||||||| Sbjct 700 ATGCCTGAGAGAAAT-GTGATTACTTGGACTGCTATGATTGATGGGTATTT 749 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78427814455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5