BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18520.1
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946342 jgi|Araly1|946342|scaffold_702571.1 2961 0.0
Ahg314676 jgi|Araly1|314676|fgenesh1_pm.C_scaffold_1003456 71.3 3e-11
> Ahg946342 jgi|Araly1|946342|scaffold_702571.1
Length=1894
Score = 2961 bits (1603), Expect = 0.0
Identities = 1805/1903 (95%), Gaps = 12/1903 (1%)
Strand=Plus/Plus
Query 76 CTTCTTCTCTTTCTCCATCGCCGACAATGTTTTCGTTATCGTTAATCCAACCGCGTCTCC 135
|||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1 CTTCTTCTCTATCTCCATCGCCG---ATGTTTTCGTTATCGTTAATTCAACCGCGTCTCC 57
Query 136 GGATTTCAGAGATTCCGGTGACTCAATCCTACAAATCTCCGACGATATGTTACAGTAGCG 195
| ||||| ||||||||||| || ||| ||| |||||| ||||||||||||||||||||||
Sbjct 58 GTATTTCGGAGATTCCGGTAACGCAAACCTTCAAATCACCGACGATATGTTACAGTAGCG 117
Query 196 ATTCAAGAACTAAGCGAGAGGAACAGAGACACGTGAGATTACCTGGGTTTCGATTAGTTT 255
||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 118 ATTCAAGAACTAAGCGAGAGGAACAGAGACACGGGAGATTGTCTGGGTTTCGACTAGTTT 177
Query 256 CTGGAAAGAGAGCATCTTTCGATTCGGGTTTTAGTGGTTTCA-AAGGAGAGAATGTGAAT 314
||||||||||| |||||||||||| ||||||||||| ||| | |||||||||||||||||
Sbjct 178 CTGGAAAGAGATCATCTTTCGATTTGGGTTTTAGTGATTT-ACAAGGAGAGAATGTGAAT 236
Query 315 CAGGATGATTCGTCTTCTTTCGATAGCGAAAGAGTTGATTATGCTCTGTTAGCGGAGTGG 374
|| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 237 CACGATGATTTATCTTCTTTCGATAGCGAACGAGTGGATTATGCTCTGTTAGCGGAGTGG 296
Query 375 CTACAGTCTTCTAATGGGATGCGACTCATTAAAAGGATCCATGCGATGGCGTTGAAGTGT 434
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 297 CTACAGTCTTCTAATGGGATGCGACTTATTAAAAGGATTCACGCGATGGCGTTGAAGTGT 356
Query 435 TTTGATGATCAAGTTATCTATTTTGGGAACAATTTGATTAGTTCTTGTGTTAGACTTGGT 494
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 357 TTTGATGATCAAGTTATCTATTTTGGGAATAATTTGATTAGTTCTTGTGTGAGACTTGGG 416
Query 495 GATTTGGTTTATGCACGTAAAGTGTTCGACAGTATGCCTGAGAAAAATACTGTTACTTGG 554
||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||
Sbjct 417 GATTTGGTTTATGCACGTAAAGTGTTCGATAATATGCCTGACAGAAATACTGTTACTTGG 476
Query 555 ACTGCTATGATTGATGGGTATTTGAAGTATGGTCTTGAGGATGAGGCTTTTGCACTGTTT 614
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 ACTGCGATGATTGATGGGTATTTGAAGTTTGGTCTTGAGGATGAGGCTTTTGCACTGTTT 536
Query 615 GAGGATTATGTGAAGCATGGAATACGTTTTACGAACGAGAGGATGTTTGTGTGTTTGTTG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAGGATTATGTGAAGCATGGAATACGTTTTACGAACGAGAGGATGTTTGTGTGTTTGTTG 596
Query 675 AATCTGTGTAGTAGGAGAGCAGAGTTTGAG-TTAGGGAGACAAGTTCATGGTAATATGGT 733
|||||||||||||||||| ||||||||||| || |||||||| || ||||||||||||||
Sbjct 597 AATCTGTGTAGTAGGAGATCAGAGTTTGAGCTT-GGGAGACAGGTACATGGTAATATGGT 655
Query 734 GAAAGTTGGAGTGGGGAATCTCATTGTGGAGAGTTCTCTTGTTTATTTTTATGCGCAATG 793
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAAAGTTGGAGTGGGAAATCTCATTGTGGAGAGTTCTCTTGTTTATTTTTATGCGCAATG 715
Query 794 CGGTGAATTGACAAGTGCGTTACGAGCTTTTGATATGATGGAGGAGAAAGATGTGATATC 853
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CGGTGAATTGACGAGTGCGTTACGAGCTTTTGATATGATGGAGGAGAAAGATGTGATATC 775
Query 854 TTGGACTGCTGTTATATCGGCGTGTTCGAGAAAAGGGCAT-GGAATTAAAGCTATAGGCA 912
|||||| || ||||| ||||| ||||| || ||||||||| |||| |||||| || | ||
Sbjct 776 TTGGACAGCGGTTATTTCGGCTTGTTCAAGGAAAGGGCATGGGAA-TAAAGCCATTGTCA 834
Query 913 TGTTTATCGGAATGTTGAATCACTGGTTTTTGCCTAACGAGTTTACGGTGTGCAGTATTT 972
||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct 835 TGTTTATCGGAATGTTGAATCACGGGTTTTTACCTAACGAGTTTACGGTATGCAGTATTT 894
Query 973 TGAAGGCTTGTAGTGAGGAGAAAGCGTTAAGATTCGGAAGGCAAGTACACAGCTTGGTTG 1032
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 895 TGAAGGCTTGTAGTGAGGAGAAAGCGATAAGATTTGGAAGGCAAGTACACAGCTTGGTGG 954
Query 1033 TTAAGAGGATGATAAAGACAGATGTTTTTGTGGGAACTTCGCTGATGGACATGTATGCTA 1092
|||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 955 TTAAAAGGATGATTAAGACAGATGTTTTCGTAGGAACTTCGCTGATGGACATGTATGCTA 1014
Query 1093 AGTGTGGGGAGATTTCTGATTGCAGAAAAGTGTTTGATGGAATGAGTAATAGAAACACGG 1152
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1015 AATGCGGGGAGATTTCTGATTGCAGAAAAGTGTTTGATGGAATGAGCAATAGAAACACGG 1074
Query 1153 TCACATGGACTTCGATTATAGCTGCTCATGCTCGGGAAGGTTTTGGTGAGGAAGCTATCA 1212
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1075 TCACGTGGACTTCGATTATAGCTGCACATGCTCGGGAAGGTTTTGGTGAGGAAGCTATCA 1134
Query 1213 GCCTCTTCCGGATAATGAAGAGGCGGCATTTGATTGCTAACAATTTGACAGTAGTAAGCA 1272
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GCCTCTTTCGGGTAATGAAGAGGCGGCATTTGATTGCTAACAATTTGACAGTAGTAAGCA 1194
Query 1273 TTCTTAGAGCGTGTGGATCTGTTGGAGCTTTATTGTTGGGGAAGGAACTTCATGCACAGA 1332
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1195 TCCTTAGAGCGTGTGGATCTGTTGGGGCTTTATTGTTAGGGAAGGAACTTCATGCTCAGA 1254
Query 1333 TTATCAAGAATTCGATCGAAAAGAATGTCTATATAGGAAGTACTTTGGTGTGGCTGTATT 1392
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1255 TAATCAAGAATTCGATAGAAAAGAATGTCTATATAGGAAGTACTTTGGTTTGGCTGTATT 1314
Query 1393 GTAAATGCGGAGAATCTCGTGACGCTTTCAATGTTCTCCAGCAATTGCCATCTAGAGATG 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GTAAATGCGGAGAATCTCGTGACGCTTTCAATGTTCTCCAGCAATTGCCATCTAGAGATG 1374
Query 1453 TGGTTTCATGGACCGCTATGATCTCTGGATGTTCGAGCTTAGGACATGAATCGGAAGCGC 1512
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1375 TGGTTTCATGGACCGCTATGATCTCTGGATGTTCGAGCTTAGGACACGAATCAGAAGCGC 1434
Query 1513 TAGACTTCTTGAAAGAGATGATTCAAGAAGGTGTAGAGCCAAACCCATTTACATACTCCT 1572
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1435 TAGACTTCTTGAAAGATATGATTCAAGAAGGTGTAGAGCCAAATCCATTTACGTACTCCT 1494
Query 1573 CGGCTTTAAAAGCTTGTGCGAATTCAGAATCTCTTCTTATCGGTAGATCAATCCATTCCA 1632
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1495 CGGCTTTAAAAGCCTGTGCGAATTCAGAATCTCTTCTAATCGGCAGATCAATCCATTCCA 1554
Query 1633 TTGCAAAGAAGAATCATGCTCTATCAAATGTCTTTGTGGGAAGTGCTTTGATTCACATGT 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1555 TTGCAAAGAAGAATCATGCTCTATCAAATGTCTTTGTGGGAAGTGCTTTGATTCATATGT 1614
Query 1693 ATGCAAAATGTGGATTTGTCTCGGAAGCTTTTCGGGTTTTTGACAGTATGCCTGAGAAGA 1752
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1615 ATGCAAAATGTGGATTTGTCTCAGAAGCTTTTCGGGTTTTCGACAGTATGCCTGAGAAGA 1674
Query 1753 ACTTGGTTTCATGGAAGGCGATGATAATGGGTTATGCGAGGAATGGGTTTTGCAGGGAAG 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 ACTTGGTTTCATGGAAGGCGATGATAATGGGTTATGCGAGGAATGGGTTTTGCAGGGAAG 1734
Query 1813 CATTGAAGCTAATGTATAGAATGGAGGCAGAGGGATTTGAAGTTGATGATTATATATTTG 1872
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1735 CATTGAAGCTAATGTATAGAATGGAAGCAGAGGGATTTGAGGTGGATGATTATATATTTG 1794
Query 1873 CAACAATTCTCTCTACTTGTGGAGATATTGAGCTCGATGAAGCTGTTGAATCTTCTGCAA 1932
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1795 CAACAATTCTCTCTACTTGTGGAGATATTGAGCTCGATGAAGCTG---AATCTTCTGCAA 1851
Query 1933 CTTGTTACTTGGAGACATCTTGATCTTTCTTCTTTAGAATCTC 1975
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1852 CTTGTTACTTGGAGACCTCTTGATCTTTCTTCTTTAGAATCTC 1894
> Ahg314676 jgi|Araly1|314676|fgenesh1_pm.C_scaffold_1003456
Length=2487
Score = 71.3 bits (38), Expect = 3e-11
Identities = 47/51 (92%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 528 ATGCCTGAGAAAAATACTG-TTACTTGGACTGCTATGATTGATGGGTATTT 577
|||||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 700 ATGCCTGAGAGAAAT-GTGATTACTTGGACTGCTATGATTGATGGGTATTT 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78427814455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5