BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18530.1
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493006 jgi|Araly1|493006|fgenesh2_kg.7__2439__AT4G18530.1 1059 0.0
Ahg890334 jgi|Araly1|890334|Al_scaffold_0007_2320 592 4e-168
> Ahg493006 jgi|Araly1|493006|fgenesh2_kg.7__2439__AT4G18530.1
Length=1526
Score = 1059 bits (573), Expect = 0.0
Identities = 675/723 (93%), Gaps = 12/723 (2%)
Strand=Plus/Plus
Query 1019 GATATCTATCTATTGTCAAAGAAGAGGGGCTTGAGATATCGCAACCTGCTCTTGACACTT 1078
|||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||
Sbjct 806 GATACCTATCTATTGTCAAAGAAGAGGGGCTTCAGATATCACAACCCGCTCTCGACACTT 865
Query 1079 CAAAATCAGAAGTGCATCATCCTATAACCGCTCGTCGaaaaaaaTCAAAAGTTCATAGAA 1138
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 866 CAAAATCAGAAGTGCATCATCCTATAACCGCTCGTCGAAAAAAATCAAAATTTCATAGAA 925
Query 1139 GAATGTATAAATACAAAGGTAGCGGGCGATGTGATGACCATAGCACCAATCCTCCTTGCA 1198
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 926 GGATGTATAAATACAAAGGTAGCGGGCGATGTGATGACCATAGCACCAATCCTCCCTGCA 985
Query 1199 TCGGGTGGGTGGAAATGATGGCACCTGTTTTCTCTAGAGCTGCATGGAGATGTTCTTGGT 1258
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 986 TCGGGTGGGTAGAAATGATGGCACCTGTTTTCTCTAGAGCAGCATGGAGATGTTCTTGGT 1045
Query 1259 ATATGATTCAGAATGATTTGATCCATGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 ATATGATTCAGAATGATTTGATCCATGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTG 1105
Query 1319 CTCAAGGTGACCGAAAGAAAAATGTCGGTGTTGTTGATGCGGAGTACATAATTCATTATG 1378
|||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 1106 CTCAAGGTGATCGAAAGAAAAATGTTGGTGTTGTTGATGCGGAGTACATTATTCATTACG 1165
Query 1379 GTCTTCCAACGCTCGGTGTGGTTGAAACCGCTTCAAGCGCTTTGCGGAATGAGACAGACT 1438
||||||| ||||| |||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 1166 GTCTTCCTACGCTAGGTGTGGTTGAAACAGCTTCAAGCTCTTTGCGGAACGAGACAGACC 1225
Query 1439 CGAAATCAACGGAATCATTAGAGTCTCGTGAAGTGGATAATAGACCAGAAGTGAGGATGA 1498
|||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 1226 CGAAATCAACGGAATCATCAGAGTCTCGTGAAGTGGACAATAGACCAGAAGTTAGGATGA 1285
Query 1499 AATCATTTGTGGAGATGAAGAGATTCAAGGAACGTTGGAAGAAAGCTGTGAGGGATGATA 1558
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1286 AATCATTTGTAGAGATGAAGAGATTCAAGGAACGTTGGAAGAAAGCTGTGAGAGATGATA 1345
Query 1559 CATGTTGGGTTGATCCGTATTGAAATCC-GAGCGGTTTAAGTAAACCGAATCAAACCGGA 1617
||||||||| |||||||||| ||| || ||| ||||||||||||||||| |||||||||
Sbjct 1346 GATGTTGGGTCGATCCGTATTAAAA-CCTGAGGGGTTTAAGTAAACCGAACCAAACCGGA 1404
Query 1618 TTCTTTTCCTTGTTGAGTG-TG----CTTTGTGGTC---C-ATTGTATACCATTATTTTG 1668
|| |||||||||||||||| || |||||||||| | ||||||||||||||||| |
Sbjct 1405 TTATTTTCCTTGTTGAGTGGTGAGTGCTTTGTGGTCGGTCCATTGTATACCATTATTT-G 1463
Query 1669 GTACATAGATTTTGTTTTACTTCGAGAAAAATTAGTGTATTTATGTGTTTTATGGACCAC 1728
||||||| |||||||||||||| || |||||| ||||||||||||||||| |||||||||
Sbjct 1464 GTACATAAATTTTGTTTTACTTGGAAAAAAATCAGTGTATTTATGTGTTTAATGGACCAC 1523
Query 1729 AGT 1731
|||
Sbjct 1524 AGT 1526
Score = 652 bits (353), Expect = 0.0
Identities = 513/584 (88%), Gaps = 36/584 (6%)
Strand=Plus/Plus
Query 51 AAAACCCTTGAATTTTGCTACACGATCTCTGAAACGTGTCTCTTTGACTGACTTCAATCT 110
|||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 39 AAAACCCTTGAA-ATTGCTACACGATCTCAGAAACGTGTCTC--T--CTGACTTCAATCT 93
Query 111 TCTTTATCACTTACCGTTTCTGGGTTTTATGAAGCAACTGAGCTAATAAAAAGCTTCTTC 170
|||| |||| || |||||||||| ||||||||||| ||||||| | ||||||||| ||
Sbjct 94 TCTTCATCAATTCCCGTTTCTGGATTTTATGAAGCCACTGAGC---T-AAAAGCTTC-TC 148
Query 171 TTAGACT--CGGAA-GAAGATAA--AAAACAGAATCTTTATTGTTTAAAGCTTCCAAATT 225
|| | | || || | | || ||||||||||||||||| ||||||||||| |||||
Sbjct 149 TTTGTTTAACGAAACTCACACAAGGAAAACAGAATCTTTATTTTTTAAAGCTTCGAAATT 208
Query 226 CGAGAAGAGAATTTGAAACGACCAAGTTCAGG--ATATTCG----TT--TCTTCGTCTAC 277
||||||||||||| |||||||||||||| || ||||||| || ||||| |||||
Sbjct 209 TGAGAAGAGAATTTAAAACGACCAAGTTCGGGATATATTCGTTTCTTCATCTTCTTCTAC 268
Query 278 TTTGGTCTCTTCCTCTTCTCTTTCGAAAAGGGTTTA-T-TCTGTCTTAAAAGAAACCTTT 335
||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct 269 TTTGGTCTCTTCCTCTTCTCTCTCGAAAAGGGTTTATTCTCTGTCACAAAAGAAACCTTT 328
Query 336 TTGA--GAGGGTaaaaaaaGCTTCAATTTTCAGAGAAACACAAAAGGCAGAAACAGAG-- 391
|||| || || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 329 TTGAGGGAAGG-AAAAAAAGCTTCAATTTTCAGAGAAACCCAAAAGGCAGAAACAGAGAT 387
Query 392 A--AAAA-C-AAATCATCTAAT-TCATGAAACAGGGTTCAATGAATAGATCGTGTCTCTG 446
| |||| | |||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 388 ATCAAAATCAAAATCACCTAATAT-ATGAAACAGGGTTCAATGAATAGATCGTGTCTCTG 446
Query 447 TAGTGTCTTAATCACCACTGCTCTGATTTGTGGTGCTTACTTCATTTGCAATGCTTATCT 506
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 447 CAGTGTCTTAATCACCACTGCTCTGATTTGTGGTGCTTACTTCATTGGCAATGCTTATCT 506
Query 507 TGCTAAAGACTTTAAAGAGAAGTTGCTGAAGTGGGAAATCACTGATAAGATGCATAACAG 566
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 507 TGCTAAAGACTTTAAAGAGAAATTGCTAAAGTGGGAAATCACTGATAAGATGCATAACAT 566
Query 567 TACTGATAAGATGCAGAATGCAACAACAACCAGTACATGCAAGA 610
|||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 567 TACTGATAAGTTGCAGAATGCAACATCAACCAGTACATGCCAGA 610
Score = 137 bits (74), Expect = 2e-31
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 713 AGAGAAGGCCTAACCATTCGATGAGTTTGTTAGCCATGGCGGTCGGTATCAAGCAAAAGG 772
|||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 608 AGAGAAGGCCGAACCATTCGATGAGTTTGTTAGCCATGGCGGTTGGAATCAAGCAGAAGG 667
Query 773 AGCTAGTTAACAAAGTTATCCAAAAG-TTT 801
|||||||||||||||||||||||||| |||
Sbjct 668 AGCTAGTTAACAAAGTTATCCAAAAGATTT 697
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 958 GAGTACGAGTATATATTTCTTTGGGACGAAGATCTTGGTGT 998
||||| |||||||||||||||||||||||||||||||||||
Sbjct 763 GAGTATGAGTATATATTTCTTTGGGACGAAGATCTTGGTGT 803
> Ahg890334 jgi|Araly1|890334|Al_scaffold_0007_2320
Length=561
Score = 592 bits (320), Expect = 4e-168
Identities = 385/417 (92%), Gaps = 2/417 (0%)
Strand=Plus/Plus
Query 1164 GCGATGTGATGACCATAGCACCAATCCTCCTTGCATCGGGTGGGTGGAAATGATGGCACC 1223
||||||||||||| |||||||||||||||| |||| |||| || ||||||||||||||
Sbjct 144 GCGATGTGATGACAATAGCACCAATCCTCCCTGCAAATGGTGTGTAGAAATGATGGCACC 203
Query 1224 TGTTTTCTCTAGAGCTGCATGGAGATGTTCTTGGTATATGATTCAGAATGATTTGATCCA 1283
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TGTTTTCTCTAGAGAAGCATGGAGATGTTCTTGGTATATGATTCAGAATGATTTGATCCA 263
Query 1284 TGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTGCTCAAGGTGACCGAAAGAAAAATGT 1343
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 264 TGCTTGGGGTCTGGATACACAGCTTGGTTATTGTGCTCAAGGTGATCGAAAGAAAAATGT 323
Query 1344 CGGTGTTGTTGATGCGGAGTACATAATTCATTATGGTCTTCCAACGCTCGGTGTGGTTGA 1403
|||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 324 TGGTGTTGTCGATGTGGAGTACATAATTCATTACGGTCTTCCAACGCTCGGTGTGGTTGA 383
Query 1404 AACCGCTTCAAGCGCTTTGCGGAATGAGACAGACTCGAAATCAACGGAATCATTAGAGTC 1463
||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 384 AACCGCTTCAAGCTCCTCGCGGAATGAGACAGACCCGAAATCAACGGAATCATTAGAGTC 443
Query 1464 TCGTGAAGTGGATAATAGACCAGAAGTGAGGATGAAATCATT-TGTGGAGATGAAGAGAT 1522
|||| |||||||| ||||||||||||||||||||||||| || ||| || ||||||| ||
Sbjct 444 TCGTAAAGTGGATTATAGACCAGAAGTGAGGATGAAATC-TTCTGTAGATATGAAGACAT 502
Query 1523 TCAAGGAACGTTGGAAGAAAGCTGTGAGGGATGATACATGTTGGGTTGATCCGTATT 1579
|| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||
Sbjct 503 TCGTTGAACGTTGGAATAAAGCTGTGAGGGATGATAGATGTTGGGTCGATCCGTATT 559
Score = 126 bits (68), Expect = 5e-28
Identities = 80/86 (93%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 713 AGAGAAGGCCTAACCATTCGATGAGTTTGTTAGCCATGGCGGTCGGTATCAAGCAAAAGG 772
||| |||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 53 AGAAAAGGCCAAACCATTCGATAAGTTTTTTAGCCATGGCAGTCGGAATCAAGCAAAAGG 112
Query 773 AGCTAGTTAACAAAGTTATCCAAAAG 798
||||||||||||||||||||||||||
Sbjct 113 AGCTAGTTAACAAAGTTATCCAAAAG 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419733650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5