BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18540.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493005 jgi|Araly1|493005|fgenesh2_kg.7__2438__AT4G18540.1 1173 0.0
> Ahg493005 jgi|Araly1|493005|fgenesh2_kg.7__2438__AT4G18540.1
Length=1605
Score = 1173 bits (635), Expect = 0.0
Identities = 781/852 (92%), Gaps = 7/852 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAACGCTTCGACTGTGAGATTTTCTAGCTGTCGAGGAGTTGCGTTTGAGATTAAA 60
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAACGCTTCGACCGTGAGATTCTCTAGCTGTCGAGGAGTTGCGTTTGAGATTAAA 60
Query 61 CCTAATGCTAACCCTTTCGCAGTTGTTACAACTGATCAGAACCGCAACGTAAACGCTGAA 120
||| |||| |||||||| || || |||||||||||||| |||| | ||| | ||||||||
Sbjct 61 CCTCATGCAAACCCTTTTGCTGTCGTTACAACTGATCAAAACCTCTACGCAGACGCTGAA 120
Query 121 CGCGAGGGAACGAGCAGCAGATTTCGACTTCCATGGGATTTCATGAGAAATGCCTCAAAA 180
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CGCGAAGGAACGAGCAGCAGGTTTCGACTTCCATGGGATTTCATGAGAAACGCCTCAAAA 180
Query 181 GTTGTCCCTTCATCGATTGAACACTCCATGAGCCGAGCCAGCAGCCATTTCTGCGATTTG 240
||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 GTTTTCCCTTCATCGATTCAACACTCCATGAGCCGAGCAAGCAGTCATTTCTGCGATTTG 240
Query 241 GATC-CCGACAATGACGATGAAGAAGAAGAAAAAGATGATATTTTCTACTTAGAAGAAGG 299
|| | ||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GA-CTCCGAC-A--ACGAGGAAGAAGAAGAAAAAGATGATATTTTCTACTTAGAAGAAGG 296
Query 300 TGGGATCAAGGAAGGAAATGAAGAACACAATGAGACGGAGGAAAAAGCAATGCTTGCTTC 359
||||||||| |||||||| |||||||||| ||||||||| || || ||||| ||||||||
Sbjct 297 TGGGATCAAAGAAGGAAACGAAGAACACAGTGAGACGGACGAGAAGGCAATCCTTGCTTC 356
Query 360 TTCCGCAAGCAAACACAGTGAGAAACCGCAGCAACCCCCGATTCCAAAGAAACGCCCTTC 419
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 357 TTCCGCAAGCAAACACAGTGAGAAACCGCAGCAACCGCCGGTTCCAAAGAAACGCGCTTC 416
Query 420 AAGACTATCAATCATACTTCTTGATCAAGGACTGTTCACCGTTTACAAACATCTCTTTGT 479
||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||
Sbjct 417 AAGACTATCCATCATACTTCTTGATCAAGGATTGTTCACCGTTTACAAACGTCTCTTCGT 476
Query 480 CCTTTCATTGTCTCTAAACGTCCTAGCTCTGGTTCTCGCGGCCACCGGAAATTTCGCTTA 539
|||||||||| ||| ||||||||||| || |||||||||||||| |||||||| |||||
Sbjct 477 TCTTTCATTGTTTCTGAACGTCCTAGCCCTCGTTCTCGCGGCCACGGGAAATTTTGCTTA 536
Query 540 CGCTAGAAACAGAGCAGCTCTATTTTCAATCGCCAATATCCTTGCCCTAATTCTCTGCAG 599
||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||
Sbjct 537 CGCTAGAAACAGAGCAGCTCTGTTTTCAATCGCCAACATTCTTGCCCTAACTCTCTGCAG 596
Query 600 AAGCGAAGCCTTCTTGAGACTCGTTTTCTACCTAACAGTAAAGCTTCTCGGACACTCCTT 659
|||||||||||||||||||||||||||||||||||| ||||| || || ||| |||||||
Sbjct 597 AAGCGAAGCCTTCTTGAGACTCGTTTTCTACCTAACCGTAAACCTCCTTGGAAACTCCTT 656
Query 660 TGTACCC-CTCCGCATAAAAATCGCTGTCACAGCTCTCTTACAAAGCCTCGGTGGTATCC 718
||| ||| |||||||| |||||||| |||||| | ||||||||||||||||||||||| |
Sbjct 657 TGT-CCCTCTCCGCATCAAAATCGCGGTCACATCGCTCTTACAAAGCCTCGGTGGTATTC 715
Query 719 ACAGCGGCTGCGGTGTTTCCTCGGTAGCTTGGCTCATCTACGCATTGGTTCTCACTCTTA 778
|||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 716 ACAGTGGCTGCGGCATTTCCTCGATAGCTTGGCTCATCTACGCATTGGTTCTTACTCTTA 775
Query 779 AAGACAGAGACAACACTTCAACAGCGATCATAGCAGTTGCGTCCACGATTCTCTCTCTCC 838
| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 776 ACGACAGAGACAACACTTCAACAGCCATCATAGCGGTTGCGTCCACGATTCTCTCTCTTC 835
Query 839 TCTGCCTCACTT 850
||||||||||||
Sbjct 836 TCTGCCTCACTT 847
Score = 1002 bits (542), Expect = 0.0
Identities = 669/728 (92%), Gaps = 18/728 (2%)
Strand=Plus/Plus
Query 851 GCCTTGTTTGGGCGTTTGTAATTCTAACGGTTTCCTACGACCCAAAATCAAGATCTTACA 910
||||||||||||||||| ||||||| || |||| ||||| |||||||||||||| ||||
Sbjct 881 GCCTTGTTTGGGCGTTTATAATTCTGACCATTTCGTACGATCCAAAATCAAGATCATACA 940
Query 911 CAGATGATCTCGGGTCGAAACTGATCAAAACACAAGAATTTTGGTTTACGCT-GGTGATC 969
||||| |||| || ||||||||||||||||| |||||||||||||||||| | | |||
Sbjct 941 CAGATAATCTTGGCTCGAAACTGATCAAAACGCAAGAATTTTGGTTTACGTTAACT-ATC 999
Query 970 ACAATC-GCTA-TCTTGCTCCCTTGGTTAACCGTGAGACGTGTTCCTGTTGACGTCTCAT 1027
|| | | || | || |||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1000 AC-AGCGGCGATTC-TGCTCCCTTGGTTAACTGTGAGACGAGTTCCGGTTGACGTCTCAT 1057
Query 1028 CTCTCTCGGGCCACGCATCGTTGATAAAATTCAGAGGAGGCCTGAAATCAGGGATCTTGG 1087
|||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 1058 CTCTCTCGGGCCACGCGTCGCTGATCAAATTCAGAGGAGGCGTGAAATCAGGGATCTTGG 1117
Query 1088 GTCGGATCAGTCCATCGCCGTTATCGGAATGGCATGCTTTTGGAATAATCTCCGATGGGA 1147
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1118 GTCGGATCAGTCCATCGCCATTATCGGAATGGCATGCTTTTGGGATAATCTCCGATGGGA 1177
Query 1148 AGACATCGCACATGATGTTGGCTGGTGCTGTCGGCGACTTTACAAAGTCTTTAGTCTCAA 1207
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1178 AGACATCGCACATGATGTTGGCTGGTGCTGTCGGCGACTTCACCAAGTCCTTAGTCTCAA 1237
Query 1208 AACCTCCAACGCATTTATGGGTCCGTACGGTTCACTTCGCTGGCTTACCCTATCTCGTTA 1267
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1238 AACCTCCAACGCATTTATGGGTCCGTACAGTTCACTTTGCCGGCTTACCCTATCTCGTTA 1297
Query 1268 ACTTGTATGACAAGGTATTACTTGTG-CCACGGGTTCGGGGATTTGCGTATTTTTATCGT 1326
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1298 ACTTGTATGACAAGGTATTACTTGTGGCCACTGGTTCGGGGATTTGCGTATTTTTATCGT 1357
Query 1327 TTCTTATGCAACCGAGTAAGGCTGAG---G--A-T----T-AAAGATTATCCTCATCAAG 1375
|||| ||||||| ||||||||||||| | | | | |||||||||||||||||||
Sbjct 1358 TTCTAATGCAACAGAGTAAGGCTGAGATTGTGAATAGGATTAAAGATTATCCTCATCAAG 1417
Query 1376 ACAGGATCATAGTTCACGATACTGCGATTCTAGGACGACCTAATGTGTCGAAAATGAGTG 1435
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 1418 ACAGGATCATAGTTCACGACACTGCGATTCTAGGACGACCTAATGTGTCGGAAATGACCG 1477
Query 1436 TGGAAGCTTCCAAGAAGTTTGGAGCTCAAGTCGTGATTGTTACAAGCAATCCTGAAGGAA 1495
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1478 TGGAAGCTTCCAAGAAGTTTGGTGCTCAAGTTGTGATTGTTACAAGCAATCCTGAAGGAA 1537
Query 1496 GTCGTGATGTTGTTAATGCTTGTAAAGCTTCTGGTGTTCCTGCTTTTGGTCCTATTTGGG 1555
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1538 GTCGTGATGTTGTTAATGCTTGTAAGGCTTCTGGTGTTCCTGCTTTTGGTCCTATTTGGG 1597
Query 1556 ATTCTTAA 1563
||||||||
Sbjct 1598 ATTCTTAA 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5