BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18550.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493004 jgi|Araly1|493004|fgenesh2_kg.7__2437__AT4G18550.1 1977 0.0
> Ahg493004 jgi|Araly1|493004|fgenesh2_kg.7__2437__AT4G18550.1
Length=1323
Score = 1977 bits (1070), Expect = 0.0
Identities = 1228/1305 (94%), Gaps = 7/1305 (1%)
Strand=Plus/Plus
Query 1 ATgaagaggaagaagaaagaggaggaggaggagaagTTGATAGTGACTAGAGAATTCGCG 60
|||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||
Sbjct 1 ATGAAGAGGAAGAAGAAAGA-GA--AGGAGGAGAAGTTGATAGTGTCTAGAGAATTTGCA 57
Query 61 AAGAGATGGCGAGATCTGAGCGGTCAAAACCATTGGAAAGGGATGTTACAGCCGTTGGAT 120
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AAAAGATGGAGAGATCTGAGCGGTCAAAACCATTGGAAAGGGATGTTACAGCCGTTGGAT 117
Query 121 CAAGATCTCCGGGAATATATCATACATTATGGTGAGATGGCTCAGGCTGGTTACGATACT 180
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 118 CAAGATCTCCGGGAATATATCATACATTACGGCGAGATGGCTCAGGCTGGTTACGATACT 177
Query 181 TTCAATATCAACACCGAATCTCAGTTCGCCGGTGCTAGCATCTACTCTAGAAAAGACTTC 240
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 178 TTCAATATCAACACCGACTCTCAGTTCGCCGGCGCTAGCATCTACTCTAGAAAAGACTTC 237
Query 241 TTCGCCAAGGTTGGTTTAGAGATAGCACACCCGTACACAAAGTACAAAGTGACGAAGTTT 300
|||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct 238 TTCGCCAAGGTTGGTTTAGAGAAAGCACATCCGTACACAAAGTACAAAGTGACCAAGTTT 297
Query 301 ATATACGCGACATCCGATATCCACGTGCCTGAGTCATTCTTATTGTTCCCAATTTCACGT 360
||||||| |||||||| |||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 298 CTATACGCAACATCCGAGATCCACGTGCCTGAATCATTCCTATTGTTCCCAGTTTCACGT 357
Query 361 GAGGGATGGTCAAAGGAATCAAATTGGATGGGTTACGTGGCGGTAACAGACGACCAAGGC 420
||||||||| ||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 358 GAGGGATGGACAAAGGAGTCGAACTGGATGGGTTACGTGGCAGTAACAGACGACCAAGGC 417
Query 421 ACGGCACTTCTTGGTCGGAGAGATATCGTGGTTTCTTGGAGAGGCTCAGTGCAACCACTT 480
||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||| |||
Sbjct 418 ACGGCGCTTCTTGGTCGGAGAGATATCGTGGTTGCGTGGAGAGGCTCAGTACAACCGCTT 477
Query 481 GAATGGGTCGAA-GACTTCGAGTTTGGTTTAGTCAACGCCATAAAAATCTTCGGTGA-AA 538
||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 478 GAATGGGTC-AACGACTTCGAGTTCGGTTTAGTCAACGCCAAAAAAATCTTCGGTGAGAA 536
Query 539 GAAACGATCAAGTACAAATTCATCAAGGTTGGTATTCAATCTACATGTCTCAAGATGAAC 598
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 -AAACGATCAAGTGCAAATTCATCAAGGTTGGTATTCAATCTACATGTCTCAAGATGAAC 595
Query 599 GATCACCTTTTACTAAGACCAATGCTCGTGACCAGGTATTGCGAGAGGTTGGAAGATTGT 658
||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 596 GATCACCTTTTACTAAGGCCAATGCTCGTGACCAGGTATTGCGAGAGCTTGGGAGATTGT 655
Query 659 TGGAGAAGTATAAGGACGAAGAAGTTAGTATAACTATATGTGGTCATAGTCTTGGAGCTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGGAGAAGTATAAGGACGAAGAAGTTAGTATAACTATATGTGGTCATAGTCTTGGAGCTG 715
Query 719 CACTCGCGACGCTTAGTGCCACTGATATTGTGGCTAATGGTTATAACCGACCAAAGAGCC 778
||||||| ||||| | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 716 CACTCGCAACGCTGAATGCTACGGATATTGTGGCTAATGGTTATAACCGACCAAAGAGCC 775
Query 779 GTCCTGACAAGTCTTGTCCTGTTACTGCCTTTGTCTTTGCTAGTCCTCGTGTTGGGGATT 838
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 776 GTCCTGACAAGTCTTGTCCAGTTACGGCCTTTGTCTTTGCCAGTCCTCGTGTTGGGGATT 835
Query 839 CAGACTTTAGGAAACTCTTTTCCGGATTGGAAGATATCCGAGTGTTACGGACAAGGAATC 898
||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||
Sbjct 836 CAGACTTTAAGAAACTCTTGTCCATATTGGAAGATATGCGAGTGTTACGGACAAGGAATC 895
Query 899 TACCGGACGTAATTCCGATCTATCCACCGATAGGTTACTCCGAGGTAGGAGATGAGTTTC 958
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 896 TACCGGACGTAATTCCAATCTATCCACCGATAGGTTACTCCGAGGTGGGAGACGAGCTTC 955
Query 959 CAATAGACACAAGAAAGTCACCATACATGAAATCTCCTGGAAACCTCGCAACCTTTCACT 1018
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 956 CAATAGACACAAGAAAGTCACAATACATGAAATCTCCTGGAAACCTCGCGACCTTTCACT 1015
Query 1019 GCTTAGAGGGTTACTTGCATGGCGTTGCCGGGACTCAAGGAACGAACAAAGCTGACTTAT 1078
|| |||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||||
Sbjct 1016 GCCTAGAGGCTTACTTGCACGGCGTTGCAGGGACTCAAGGAACGGCCAAAGCTGACTTAT 1075
Query 1079 TCAGACTCGATGTGGAAAGAGCCATCGGATTGGTCAATAAATCAGTGGATGGGTTAAAAG 1138
|||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1076 TCAGACTCGATGTGAAAAGAGCCATCGGATTGGTCAACAAATCAGTCGATGGCTTAAAAG 1135
Query 1139 ACGAGTGTATGGTCCCAGGGAAATGGAGGGTTCTTAAAAACAAAGGTATGGCCCAACAAG 1198
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1136 ACGAGTGTATGGTCCCAGGTAAATGGAGGGTTCTTAAAAACAAAGGTATGGTCCAACAAG 1195
Query 1199 ACGATGGATCTTGGGAGTTAGTGGACCATGAGATTGATGATAATGAAGATTTGGATTTCT 1258
||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ACGATGGGTCTTGGAAGTTATTGGACCATGAGATTGATGATAATGAAGATTTGGATTTCT 1255
Query 1259 GATTTCTTGGTCATTTTTTCTTTGTCAAGTGTTGATGTTTGGAAA 1303
||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1256 GATTTTTTGGTCATTTTTTCTTTGTGAAGTGTTGATGTTTGGAAA 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5