BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18570.1
Length=2309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493003 jgi|Araly1|493003|fgenesh2_kg.7__2436__AT4G18570.1 3301 0.0
> Ahg493003 jgi|Araly1|493003|fgenesh2_kg.7__2436__AT4G18570.1
Length=2256
Score = 3301 bits (1787), Expect = 0.0
Identities = 2152/2314 (93%), Gaps = 81/2314 (4%)
Strand=Plus/Plus
Query 19 AGTAGTCTCATCTTCTTCTTAATCCAAAGGCCCAAACTTTGAATCATCACTATCA----c 74
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1 AGTAGTCTCATCTTCTTCTTAATTCAAAGGCCCAAACTTTGAATCATCACTATCACTCTC 60
Query 75 tctctctctctctctctatctctcAAGAACTGCACGGACAACGACATGCTTTTAATTTCC 134
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCTCTCTCTCTCTTTCTCTCAAGAACTGCACGGACAACGACATGCTTTTAATTTCC 120
Query 135 ATGCAAATCTCTCCTTTCTTCTC-A--AG---TCATTTTTGAAAATCAATCAAAAAACTG 188
||||||||| ||||||||||||| | || ||||||||||||||||||| |||| |
Sbjct 121 ATGCAAATCCCTCCTTTCTTCTCAACTAGTCATCATTTTTGAAAATCAATC--AAAA-T- 176
Query 189 AAACTTGGTGGAGC-TTTTATCATTCA-C-T-CATCAATGGTGGCTGGTAAGGTTCGTGT 244
|| |||||| |||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 177 ----TT--TGGAGCTTTTTATCATTCATCATCCATCAATGGTGGCTGGTAAGGTTCGTGT 230
Query 245 AACAATGGGTTTTCACAAATCACCTTCTACTaaaaaaaCCAAAGACATGccttctccttt 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 231 AACAATGGGTTTTCACAAATCACCTTCTACTAAAAAAACCAAAGATATGCCTTCTCCTTT 290
Query 305 acctc-t--tcctcctcctcctcctcctccACTTAAACCACCTTCTTCCGGTTC--C-GC 358
||||| | ||||||||||||||||||||| |||||||| |||||||||||||| | ||
Sbjct 291 ACCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTTAAACCGCCTTCTTCCGGTTCTACTGC 350
Query 359 TACTACTAAACCACCGATTAATCCTAGTAAACCGGGTTTCACTCGCTCTTTCGGTGTTTA 418
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 TACTACTAAACCGCCGATTAATCCTAGTAAACCGGGTTTCACTCGCTCTTTCGGCGTTTA 410
Query 419 TTTCCCACGCGCTTCCGCTCAAGTTCACGCCACTGCTGCTGCTGCTTCTCATAACGGCGT 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 411 TTTCCCACGCGCTTCCGCTCAAGTTCACGCTACTGCTGCTGCTGCTTCTCATAACGGCGT 470
Query 479 CGTTTCTGAGCTTCGTCGTCAAGTCGAGGAGCTTCGTGAGAGAGAAGCTCTGTTGAAAAC 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CGTCTCTGAGCTTCGTCGTCAAGTCGAGGAGCTTCGTGAGAGAGAAGCTCTGTTGAAAAC 530
Query 539 AGAGAATCTCGAGGTCAAGCTTCTTAGAGAATCTGTTTCTGTTATTCCGTTGCTTGAATC 598
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 531 AGAGAATCTCGAGGTTAAGCTTCTAAGAGAATCTGTTTCTGTTATTCCGTTACTTGAATC 590
Query 599 GCAGATCGCTGATAAGAACGGCGAAATCGATGAGCTTAGGAAAGAGACGGCGAGATTAGC 658
||||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 591 GCAGATCGCGGAGAAGAACGGCGAAATCGAGGAGTTTAGGAAAGAGACGGCGAGGTTAGC 650
Query 659 GGAGGACAACGAGAGATTACGGCGAGAATTTGACCGGAGCGAGGAAATGAGGAGAGAGTG 718
|||||| ||||||||||||||||||| | | ||||||||||||||||| ||| |
Sbjct 651 GGAGGAGAACGAGAGATTACGGCGAG-A----A----AGCGAGGAAATGAGGAGGGAGAG 701
Query 719 TGAGACGAGGGAGAAGGAAATGGAGGCGGAGATTGTT-GAGCTTCGGAAACTTGTTTCGT 777
|||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 702 CGAGAGGAGGGAGAAGGAAATGGAGGCGGAGA-TGTTGGAGCTTCGGAAACTTGTTTCGT 760
Query 778 CGGAGAGTGACGACCACGCGCTCTCTGTTTCTCAGAGGTTTCAGGGTTTAATGGATGTGT 837
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CGGAGAGTGACGATCACGCGCTCTCTGTTTCTCAGAGGTTTCAGGGTTTAATGGATGTGT 820
Query 838 CGGCGAAATCTAACCTAATCAGAAGTTTAAAACGGGTCGGGTCGTTGAGGAATTTACCCG 897
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CGGCGAAATCGAATCTAATCAGAAGTTTAAAACGGGTCGGGTCGTTGAGGAATTTACCCG 880
Query 898 AACCGATTACGAATCAAGAGAATACCAACAAGAGCATTTCATCATCCGGAGACGCCGACG 957
| |||||| ||||||||||| | | ||||||| |||||||||||||||||||||| ||||
Sbjct 881 ACCCGATTCCGAATCAAGAG-A-A-CAACAAGGGCATTTCATCATCCGGAGACGCTGACG 937
Query 958 GCGACATTTATCGGAAAGACGAGATCGAGAGTTATTCACGGAGTAGTAACTCGGAGGAAC 1017
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 938 GTGACATTTATCGGAAAGACGAGATCGAGAGTTATGCACGGAGTAGTAACTCGGAGGAAC 997
Query 1018 TCACTGAGTCATCGTCTCTCTCAACCGTCAGATCTAGAGTTCCGAGAGTCCCTAAACCAC 1077
||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 998 TCACTGAGTCATCATCTCTCTCCGCCGTCAGATCTAGAGTTCCGAGAGTCCCGAAACCAC 1057
Query 1078 CGCCGAAACGGTCTATTTCGTTAGGTGATTCCACGGAGAACAGAGCAGACCCGCCACCGC 1137
|||| ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1058 CGCCTAAACGTTCTTTTTCATTAGGTGATTCCACGGAGAACAGAGCAGATCCGCCGCCGC 1117
Query 1138 AGAAATCGATTCCGCCTCCTCCTCCTCCACCTCCGCCACCGCTTCTTCAACAACCACCAC 1197
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1118 AGAAATCGATTCCG---CCTCCTCCTCCACCTCCGCCACCGCTTCTT---CAACCACCAC 1171
Query 1198 CACCTCCGTCTGTTTCCAAAGCTCCTCCTCCGCCTCCTCCACCACCGCCGCCGAAGAGTT 1257
|| | ||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 1172 CA----C--CTGTTTCTAAAGCTCCTCCTCCGCCTCCTCCACCGCCACCGCCGAAGAGTT 1225
Query 1258 TAAGCATTGCGTCGGCGAAAGTGAGAAGAGTACCGGAAGTGGTTGAGTTTTATCACTCGT 1317
||||||||||||| |||||||| |||||||| |||||||| || |||||||||||||| |
Sbjct 1226 TAAGCATTGCGTCTGCGAAAGTAAGAAGAGTGCCGGAAGTTGTGGAGTTTTATCACTCTT 1285
Query 1318 TGATGCGAAGAGACTCCACAAACTCGAGAAGAGATTCCACCGGCGGTGGAAACGCCGCCG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TGATGCGAAGAGACTCCACAAACTCGAGAAGAGATTCCACCGGCGGTGGAAACGCCGCCG 1345
Query 1378 CGGAAGCAATACTTGCTAA-CTCCAACGCCAGAGACATGATCGGAGAAATCGAAAACCGA 1436
|||| ||||||||||| || |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1346 CGGAGGCAATACTTGC-AAGCTCCAATGCCAGAGATATGATCGGAGAAATCGAAAACCGA 1404
Query 1437 TCGGTTTATCTCCTCGCGATAAAAACCGACGTAGAAACGCAAGGAGATTTCATAAGGTTC 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1405 TCGGTTTATCTCCTCGCGATAAAAACCGACGTAGAAACGCAAGGAGATTTCATAAGATTC 1464
Query 1497 TTGATCAAAGAAGTCGGAAACGCTGCGTTTTCAGACATTGAAGACGTTGTTCCTTTCGTC 1556
|||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1465 TTGATCAAAGAAGTCGAAAACGCAGCGTTTTCAGATATTGAAGACGTCGTTCCTTTCGTC 1524
Query 1557 AAATGGCTCGACGACGAACTCTCTTACCTGGTTGATGAGAGAGCAGTGTTGAAACATTTC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 AAATGGCTCGACGACGAACTCTCTTACCTGGTTGATGAGAGAGCAGTGTTGAAACATTTC 1584
Query 1617 GAGTGGCCGGAGCAAAAAGCTGATGCTTTACGTGAAGCAGCGTTTTGTTATTTCGATCTA 1676
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1585 GAATGGCCGGAGCAAAAAGCTGATGCGTTACGTGAAGCAGCGTTTTGTTATTTCGATCTG 1644
Query 1677 AAGAAACTCATATCAGAAGCTTCTCGTTTCCGGGAAGATCCTCGTCAATCTTCTAGCTCT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 AAGAAACTCATATCAGAAGCTTCTCGTTTCCGGGAAGATCCTCGTCAATCTTCTAGCTCT 1704
Query 1737 GCTCTTAAGAAAATGCAAGCTTTGTTTGAAAAGTTAGAGCATGGTGTTTATAGTCTTTCG 1796
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1705 GCTCTTAAAAAAATGCAAGCTTTATTTGAAAAGTTAGAGCATGGTGTTTATAGTCTGTCG 1764
Query 1797 AGGATGAGAGAATCGGCGGCAACAAAATTCAAGAGTTTCCAGATTCCGGTTGATTGGATG 1856
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1765 AGGATGAAAGAATCGGCGGCCACAAAATTCAAGAGTTTCCAGATTCCGGTTGATTGGATG 1824
Query 1857 CTCGAAACCGGTATTACTAGCCAGATTAAACTGGCATCCGTGAAACTAGCGATGAAGTAT 1916
|||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1825 CTCGAAACCGGTATAACCAGCCAGATTAAACTGGCATCAGTGAAACTTGCGATGAAGTAT 1884
Query 1917 ATGAAGAGAGTATCCGCAGAGCTAGAGGCTATTGAAGGTGGTGGCCCTGAAGAGGAAGAG 1976
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1885 ATGAAGAGAGTATCCGCAGAGCTTGAGGCTATTGAAGGTGGTGGCCCTGAAGAGGAAGAG 1944
Query 1977 CTAATTGTCCAAGGTGTTCGATTCGCATTCCGTGTTCATCAGTTTGCCGGAGGATTTGAT 2036
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1945 CTAATTGTACAAGGCGTTCGATTCGCATTCCGTGTTCATCAGTTTGCGGGAGGATTTGAT 2004
Query 2037 GCAGAAACAATGAAGGCATTTGAAGAGCTAAGAGATAAAGCAAGATCATGTCATGTTCAG 2096
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2005 GCAGAGACAATGAAGGCATTCCAAGAGCTAAGAGATAAAGCAAGATCATGTCATGTTCAG 2064
Query 2097 TGTCAAAGCCAAACACATCAACATAAACTTTGTTTTCGATCTACCCCTTGTTAAAGAAGC 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 TGTCAAAGCCAAACACATCAACATAAACTTTGTTTTCGATCTACCCCTTGTTAAAGAAGC 2124
Query 2157 AATCTTAGCTTCATATATAATCCACCTCTTGTTGTCATTTTCTCGATTTAATTTGttttt 2216
|||||||||||| | | |||||||||||||| |||||||||||||||
Sbjct 2125 AATCTTAGCTTC-T-T--------------GTTGTCATTTTCTCTATTTAATTTGTTTTT 2168
Query 2217 ttGTT-CTTTCGTCTTAAAAGACCTATAACTCTTGTGAATATACGTTCTCGATCGTCTTG 2275
|| || || |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2169 TTTTTACT--CGTCTTAAAAGACCTATAACTCTTGTGAATATACGTTCTC--T--TCTTG 2222
Query 2276 CTGAAAAAGGATTAAAACAGTTGATATTCAAAGG 2309
|||||||||||| |||||||||||||||||||||
Sbjct 2223 CTGAAAAAGGATAAAAACAGTTGATATTCAAAGG 2256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86960029335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5