BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18580.1
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493002 jgi|Araly1|493002|fgenesh2_kg.7__2435__AT4G18580.2 457 6e-128
> Ahg493002 jgi|Araly1|493002|fgenesh2_kg.7__2435__AT4G18580.2
Length=577
Score = 457 bits (247), Expect = 6e-128
Identities = 422/499 (85%), Gaps = 41/499 (8%)
Strand=Plus/Plus
Query 33 TTTCGCCACCGCTGATGTCTTGTTCTTCTCTTACTGAGTTTTGATAATTCGTCGACGATC 92
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TTTCGCCACCGCTAATCTCTTGTTCTTCTCTGACTGAGTTTTGATAATTCGTCGACGATC 60
Query 93 AAATTTCTCAAGATCTGATAAACGATTTTCTCTGAATCTTC------G-------A---- 135
|||||||| ||||| ||| |||||||||||| ||||||| | |
Sbjct 61 AAATTTCTGGAGATCCGATTGACGATTTTCTCTTAATCTTCGAAAAGGTAAAATCATTTT 120
Query 136 T--A--AGGACATGGCAACATTGGCACCAGTTCATGCTGTTTCTGTTCTGCATTCTCGGA 191
| | |||||||||||||||||||||||| |||||||||||| | | ||||| |||
Sbjct 121 TGAATCAGGACATGGCAACATTGGCACCAGGTCATGCTGTTTC-G---T--ATTCTTGGA 174
Query 192 AGAGGGGAGGCTGCAACGGAGTTCCTTTACCATATCTGATCCGACCTCGTAGGAAAATTC 251
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||
Sbjct 175 AGAGGGGAGGCTGCAATGGAGTTCCTTTACCATATTTGATCCGACCTCGTAGGATATTTC 234
Query 252 CCCCTGTTGATACGTTTGATTTCTACAACGATT-CTGA--TGATGA-GAGTGGTGAAGGT 307
||||| ||||||||||| ||||||||||||| | | ||| || || || |||| |
Sbjct 235 CCCCTATTGATACGTTTCCCTTCTACAACGATTATTCATCTGACGATGA-TGATGAA-GC 292
Query 308 GATAAAGGTCATTCAGATGACGAATATGTAGTCGTAGACAAAGCTGAAGCTATTATGCCC 367
| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 293 G--GCAGGTCATTCAGATGACGAATATGTAGTCGTTGACAAAGCTGAAGCTATTATGACC 350
Query 368 AATGT-TAAAACAGAGAAACCAGGAGCTATTCAAATGATGGAACTCTCAAAAGATGCA-G 425
||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||| || |
Sbjct 351 AAT-TCTAAAACAGAGAAACCAGGAGCGATTCAAATGATGGAACTCTCAAAGGATACAGG 409
Query 426 TCGGTGATGATGAGTCT-AAAGCCAAAGATGCTGGATACAGCAGTGATGAGTGGTTTGTT 484
| | ||||||||||| | ||| |||||||||||||||||||||||||||||||| | |||
Sbjct 410 T-GCTGATGATGAGTGTGAAA-CCAAAGATGCTGGATACAGCAGTGATGAGTGGGTGGTT 467
Query 485 GTGTAACTAGGAGGTGCAA 503
|||||| ||||||||||||
Sbjct 468 GTGTAATTAGGAGGTGCAA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5