BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18590.1 Length=653 Score E Sequences producing significant alignments: (Bits) Value Ahg329677 jgi|Araly1|329677|fgenesh1_pm.C_scaffold_7001904 494 4e-139 > Ahg329677 jgi|Araly1|329677|fgenesh1_pm.C_scaffold_7001904 Length=321 Score = 494 bits (267), Expect = 4e-139 Identities = 304/322 (94%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 88 ATGGATACATCAAGTCCTGCTGCTTTTGTGAATGGAGCTTTGTTGAGAAGGTACATTGGT 147 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1 ATGGATACATCAAGTCCTGCTGCTTTTGTTAATGGAGCTTTGTTGAGACGGTACATTGGT 60 Query 148 CAGAAAGTGAGAGCAGTGATTCAAGTTATCAGATCAGATGTTGGATCAGTGATTGGTAAA 207 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 61 CAGAAAGTGAGAGCAGTGATTCAAGTTATCAGGTCAGATATTGGATCAGTGATTGGTAAA 120 Query 208 TCGACTGATGATCAACAGATTGTTGTTAAAGGTTCTCCTCAA-CCGCCTTTAACTACTTA 266 ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||| Sbjct 121 TCGACTGATGATCAACAGATTGTTGTTAAGGGTTCACCA-AATCCGCCTTTAACTACTTA 179 Query 267 CCTTGAGGTAATTGGAATTGCTGAGACTGACAACACTATTCGTGCTGAAGTTTGGACCAA 326 | |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 180 CATTGAGGTAATTGGAATTGCTGAGACTGAGAACACCATTCGAGCTGAAGTTTGGACCAA 239 Query 327 CTTTGGTGATAGTTTCGATGTGCAAAACTACAATGAGCTATGTAAGCTTGCAAATGGTGA 386 ||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||| Sbjct 240 CTTTGGTGATAGTTTTGATGCACAAAACTACAATGAACTATGTAAGCTCGCAAATGGTGA 299 Query 387 GTTTAGACACTTGTTCATCTAA 408 |||||||||||||||||||||| Sbjct 300 GTTTAGACACTTGTTCATCTAA 321 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23941191876 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5