BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18590.1

Length=653
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329677 jgi|Araly1|329677|fgenesh1_pm.C_scaffold_7001904           494    4e-139


> Ahg329677 jgi|Araly1|329677|fgenesh1_pm.C_scaffold_7001904
Length=321

 Score =  494 bits (267),  Expect = 4e-139
 Identities = 304/322 (94%), Gaps = 2/322 (1%)
 Strand=Plus/Plus

Query  88   ATGGATACATCAAGTCCTGCTGCTTTTGTGAATGGAGCTTTGTTGAGAAGGTACATTGGT  147
            ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  1    ATGGATACATCAAGTCCTGCTGCTTTTGTTAATGGAGCTTTGTTGAGACGGTACATTGGT  60

Query  148  CAGAAAGTGAGAGCAGTGATTCAAGTTATCAGATCAGATGTTGGATCAGTGATTGGTAAA  207
            |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  61   CAGAAAGTGAGAGCAGTGATTCAAGTTATCAGGTCAGATATTGGATCAGTGATTGGTAAA  120

Query  208  TCGACTGATGATCAACAGATTGTTGTTAAAGGTTCTCCTCAA-CCGCCTTTAACTACTTA  266
            ||||||||||||||||||||||||||||| ||||| ||  || |||||||||||||||||
Sbjct  121  TCGACTGATGATCAACAGATTGTTGTTAAGGGTTCACCA-AATCCGCCTTTAACTACTTA  179

Query  267  CCTTGAGGTAATTGGAATTGCTGAGACTGACAACACTATTCGTGCTGAAGTTTGGACCAA  326
            | |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct  180  CATTGAGGTAATTGGAATTGCTGAGACTGAGAACACCATTCGAGCTGAAGTTTGGACCAA  239

Query  327  CTTTGGTGATAGTTTCGATGTGCAAAACTACAATGAGCTATGTAAGCTTGCAAATGGTGA  386
            ||||||||||||||| ||||  |||||||||||||| ||||||||||| |||||||||||
Sbjct  240  CTTTGGTGATAGTTTTGATGCACAAAACTACAATGAACTATGTAAGCTCGCAAATGGTGA  299

Query  387  GTTTAGACACTTGTTCATCTAA  408
            ||||||||||||||||||||||
Sbjct  300  GTTTAGACACTTGTTCATCTAA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23941191876


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5