BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18593.1
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493000 jgi|Araly1|493000|fgenesh2_kg.7__2433__AT4G18593.1 848 0.0
> Ahg493000 jgi|Araly1|493000|fgenesh2_kg.7__2433__AT4G18593.1
Length=648
Score = 848 bits (459), Expect = 0.0
Identities = 594/656 (91%), Gaps = 21/656 (3%)
Strand=Plus/Plus
Query 1 ACTTAAACCGAACAGATTTGTCACGAAGAAGAAATCAGTGTA--G-CAGACACCATCCAT 57
||||||||||||||||||||||||||||||| ||||||||| | || | | | |||
Sbjct 1 ACTTAAACCGAACAGATTTGTCACGAAGAAGGTATCAGTGTAGGGTTAGTGA-C-T-CAT 57
Query 58 CCCT-GAGCA-AAGATAGAAGA-AA---AGCTATGACTGATTTGCAAATGGAGGTAGAGG 111
| | | | |||||||||| || | ||||| |||| |||||||||||||||||||
Sbjct 58 --GTAGTGGATTAGATAGAAGAGAAGCTATCTATGTCTGAGTTGCAAATGGAGGTAGAGG 115
Query 112 TAGATACCAATTCTTCTTTGCAGGAGTCT-CTCCCGAAGCCGCAAGTCATGTACAGATGT 170
|||| || ||||||||||| || |||||| | ||||||||||||||||||||||||||||
Sbjct 116 TAGAGACTAATTCTTCTTTACAAGAGTCTAC-CCCGAAGCCGCAAGTCATGTACAGATGT 174
Query 171 AAGAAATGTAGAAGGATAGTTGCTATTGAGGAAAACATAGTCCCGCATGAACCAGGAAAG 230
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||
Sbjct 175 AAGAAATGTAGAAGGATAGTCGCTATTGAGGAAAACATAGTACCGCATGAACCGGGGAAG 234
Query 231 GGTGAAGAATGCTTTGCTTGGAAAAAGAGAAGTGGAAACTCTGAACAAGTGCAATGCTCT 290
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 235 GGTGAAGAATGCTTTGCTTGGAAAAAGAGAAGCGGAAACTCTGAACCAGTGCAATGCTCT 294
Query 291 TCCATCTTTGTCGAGCCTATGAAATGGATGCAGACAATACATGATGGAATGGTGGAAGAG 350
|| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 295 TCGATCTTTGTCGAGCCTATGAAATGGATGCAGACAATACATGATGGATTAGTGGAAGAG 354
Query 351 AAGCTTCTATGTTTTGGATGTAACGGGAGATTAGGTTATTTCAACTGGGCTGGGATGCAA 410
|||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 355 AAGCTTCTTTGTTTTGGATGTAACGGTCGGTTAGGTTATTTCAACTGGGCTGGGATGCAA 414
Query 411 TGTAGCTGTGGTGCATGGGTTAATCCGGCTTTTCAGCTTAATAAAAGCCGAATAGACGAG 470
|||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 415 TGTAGCTGCGGCGCATGGGTGAATCCGGCTTTCCAGCTTAATAAAAGCCGAATAGACGAG 474
Query 471 TGTAAATCCGAGCCAAACCCGAACCTGAATATGGAAACTTGATGAAAAA-GGAGAAGATG 529
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 475 TGTAAATCCGAGCCAAACTCGAACCTGAATATGGAAACTGGATGAAAAAAGGAGAAGATG 534
Query 530 TAAACTCTTGGATAACTAAAGATTGATAAAAAGATCAAATTAAAGCCTTATTGTATTGAC 589
||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||
Sbjct 535 TAAACTCTTGGATAACTAAAGATTGATAATAAGATCAAATTGA-GCCGTATTGTATTGAC 593
Query 590 TATCCCTAATGGGGTTTTTAGTTTCAT-TG-TTTAAATTCAAACATAGAATTAGTT 643
||||| ||||| ||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 594 TATCC-TAATGAGGTTTTTAGTTTCATGTTATTTAAATTCAAACATAAAATTAGTT 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23826823125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5