BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18596.1
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492999 jgi|Araly1|492999|fgenesh2_kg.7__2432__AT4G18596.1 1046 0.0
Ahg494394 jgi|Araly1|494394|fgenesh2_kg.8__210__AT5G45880.1 619 7e-177
> Ahg492999 jgi|Araly1|492999|fgenesh2_kg.7__2432__AT4G18596.1
Length=667
Score = 1046 bits (566), Expect = 0.0
Identities = 639/672 (95%), Gaps = 13/672 (2%)
Strand=Plus/Plus
Query 1 AGTTGTCCTCTTCTCTAACATCTCAAACAAAGAAAACGATTACAAAAGAGAAGAGGTATC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTGTCCTCTTCTCTAACATCTC-AACAAAGAAAACGATTACAAAAGAGAAGAGGTATC 59
Query 61 AAAAAGAAGACCAGAATCTTTTAACATTTTGAAACAAATGGCGTCCAAAGCCA---TCTT 117
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 -AAAA-AAGACCAGAATCTTTTAACATTTTGAAACAAATGGCGTCCAAAGCCATCTTCTT 117
Query 118 CTTCTTCTTTGTCTCTGCCGTGTGCCTGTCCTCTCTCGCCGGTGTGGCCATCGCTGATGC 177
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 118 CTTCTTCTTTGTCTCCGCCGTGTGCCTGTCCTCTCTCGCCGGCGTGGCCATCGCTGACGC 177
Query 178 CGATGACTTTGACCGTTTCCAAATTCAGGGATCGGTTTATTGTGACACATGCCGTGTCCA 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 178 CGATGACTTTGACCGTTTCCAAATTCAAGGATCGGTTTATTGTGACACATGCCGTGTCCA 237
Query 238 ATTCGTTACCCGTCTCAGCAAGTTCCTTGAAGGCGCGAAAGTGAAGCTAGAATGCAGGAG 297
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 238 ATTCGTTACCCGCCTCAGCAAGTTCCTTGAAGGAGCGAAAGTGAAGCTAGAGTGCAGGAG 297
Query 298 CAGAACAAACGGAACCGTAACATTGACAAAAGAAGCCGTAACGGACAAAACAGGGAGCTA 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 CAGAACAAACGGAACCGTAACATTGACAAAAGAAGCCGTCACGGACAAAACAGGGAGCTA 357
Query 358 CAGAATGGAAGTGACCGGTGACCATGAGGAGGAAGTTTGCGAGCTTGTGCTCGTCGAATC 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 CAGAATGGAAGTGACCGGTGACCACGAGGAGGAAGTTTGCGAGCTTGTGCTCGTCGAATC 417
Query 418 ACCAGACAGTGGTTGCAGTGACGTTAGCAAAGAGGCTTACCTACGTAACGCCGCTAAGAT 477
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 ACCAGACAGTGGTTGCAGTGACGTTAGCAAAGAGGCTTACCTACGTAACGCTGCTAAGAT 477
Query 478 CAGCCTGACCGCGAATGACGGAATCGTCTCTCACGAGACACGTATCGTTAACCCTCTCGG 537
|||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 CAGCTTGACCGCGAATGATGGAATCGTCTCTCACGAGACACGTATTGTTAACCCTCTCGG 537
Query 538 TTTCATGGTTCAA-ACTCCGTCAGCTGAATGTCCCGCTGC-TTTCAAGGAGCTCGGGATC 595
||||||||| || || |||||| |||||||||||||||| ||| ||||||||||| |||
Sbjct 538 CTTCATGGTT-AAGACGCCGTCACCTGAATGTCCCGCTGCCTTT-AAGGAGCTCGGAATC 595
Query 596 GTTCCTGATGTCACCTTCTAAATTTAATGAT---TTCAAGATCGTCATTTAAGTGTAATC 652
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 596 GTTCCTGATGTCACCTTCTAAATTTAATGACGACTTCAAGATCGTCGTTTAAGTGTCATC 655
Query 653 TATTGTTTGTTT 664
||||||||||||
Sbjct 656 TATTGTTTGTTT 667
> Ahg494394 jgi|Araly1|494394|fgenesh2_kg.8__210__AT5G45880.1
Length=771
Score = 619 bits (335), Expect = 7e-177
Identities = 465/528 (88%), Gaps = 8/528 (2%)
Strand=Plus/Plus
Query 96 AAATGGCGTCCAAAGCCATCTTC-T-TC-TTC--T-TTGTCTCTGCCGTGTGCCTGTCCT 149
||||||| |||||||| |||||| | || ||| | |||| || |||||||| |||| |
Sbjct 100 AAATGGCTTCCAAAGCTATCTTCTTCTCTTTCTTTGTTGTTTCCGCCGTGTGTTTGTCTT 159
Query 150 CTCTCGCCGGTGTGGCCATCGCTGATGCCGATGACTTTGACCGTTTCCAAATTCAGGGAT 209
||||||||||| | ||| ||||||||| |||||||| || |||||||| ||||||||||
Sbjct 160 CTCTCGCCGGTTTCGCCGCCGCTGATGCTGATGACTTCGATCGTTTCCAGATTCAGGGAT 219
Query 210 CGGTTTATTGTGACACATGCCGTGTCCAATTCGTTACCCGTCTCAGCAAGTTCCTTGAAG 269
| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 220 CAGTTTACTGTGACACTTGCCGTGTCCAATTCGTTACCCGTCTCAGCAAATTCCTCGAAG 279
Query 270 GCGCGAAAGTGAAGCTAGAATGCAGGAGCAGAACAAACGGAACCGTAACATTGACAAAAG 329
| |||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 280 GTGCGAAAGTGAAGTTGGAGTGCAGGAGCAGAACAAACGGAACCGTAACATTGACCAAAG 339
Query 330 AAGCCGTAACGGACAAAACAGGGAGCTAC-AGAATGGAAGTGACCGGTGACCATGAGGAG 388
|||| || || ||||||||||| |||||| || |||||||| || |||||||| |||||
Sbjct 340 AAGCTGTTACCGACAAAACAGGAAGCTACAAG-ATGGAAGTAACTGGTGACCACGAGGAA 398
Query 389 GAAGTTTGCGAGCTTGTGCTCGTCGAATCACCAGACAGTGGTTGCAGTGACGTTAGCAAA 448
||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||
Sbjct 399 GAAGTTTGCGAGCTTGTTTTGGTCCAATCACCAGACAGTGGTTGCAGTGACGTCAGCAAA 458
Query 449 GAGGCTTACCTACGTAACGCCGCTAAGATCAGCCTGACCGCGAATGACGGAATCGTCTCT 508
||||||||| |||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 459 GAGGCTTACTTACGTAACGCCGCTAAGATCAGTTTAACGGCGAATGACGGAATCGTCTCT 518
Query 509 CACGAGACACGTATCGTTAACCCTCTCGGTTTCATGGTTCAAACTCCGTCAGCTGAATGT 568
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||
Sbjct 519 CACGAGACACGTATCGTTAACCCTCTCGGTTTCATGGTTCAGACTCCATTGGCTGATTGT 578
Query 569 CCCGCTGCTTTCAAGGAGCTCGGGATCGTTCCTGATGTCACCTTCTAA 616
|| ||||||||||||||||| || || || ||||| ||||| ||||||
Sbjct 579 CCTGCTGCTTTCAAGGAGCTTGGTATTGTCCCTGACGTCACATTCTAA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27219762738
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5