BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18610.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946331 jgi|Araly1|946331|scaffold_702560.1 1044 0.0
Ahg927295 jgi|Araly1|927295|scaffold_202856.1 93.5 2e-18
> Ahg946331 jgi|Araly1|946331|scaffold_702560.1
Length=619
Score = 1044 bits (565), Expect = 0.0
Identities = 602/620 (97%), Gaps = 2/620 (0%)
Strand=Plus/Plus
Query 77 aaaTCAGAATTCCCCTAATAATGTCTTCGGATCGTCACACACCGACGAAAGATCCACCGG 136
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATTAGAATTCCCCTAATAATGTCTTCGGATCGTCACACACCGACGAAAGATCCACCGG 60
Query 137 ATCATCCGTCTTCTTCCTCCAACCACCACAAGCAACCACTTCCTCCTCAACCGCAGCAAC 196
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 ATCATCCGTCTTCTTCCTCCAACCACCACAAGCAACCACTTCCTCCTCAGCCGCAGCAAC 120
Query 197 CACTCAGCCGCTATGAATCGCAGAAACGCCGCGACTGGAACACGTTCGTCCAATACCTAA 256
||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 121 CACTCAGCCGCTACGAATCGCAGAAACGCCGCGATTGGAACACGTTCATCCAATACCTAA 180
Query 257 AATCACAAAATCCACCGTTGATGATGTCTCAATTCGACTACACGCACGTGCTAAGTTTCC 316
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 AATCACAAAATCCACCGTTGATGATGTCTCAGTTCGACTACACGCACGTGCTAAGTTTCC 240
Query 317 TAAGGTACTTAGATCAGTTTGGTAAGACCAAAGTACATCATCAAGCTTGTGTCTTCTTCG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAAGGTACTTAGATCAGTTTGGTAAGACCAAAGTACATCATCAAGCTTGTGTCTTCTTCG 300
Query 377 GACAACCGGATCCACCAGGTCCGTGCACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAG 436
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACAACCCGATCCACCAGGTCCGTGCACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAG 360
Query 437 ATGCTTTGATCGGACGGCTAAGAGCTGCTTACGAGGAACACGGTGGCGGGTCACCTGATA 496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGCTTTGATCGGACGGCTAAGAGCTGCTTACGAGGAACACGGTGGCGGGTCACCTGATG 420
Query 497 CTAACCCGTTTGCAAACGGGTCGATCCGGGTTCACTTGAGGGAAGTGAGAGAATCTCAAG 556
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 CTAACCCGTTTGCAAACGGGTCTATCCGGGTTCACTTGAGGGAAGTGAGAGAATCTCAAG 480
Query 557 CCAAGGCTCGTGGGATTCCGTACAGGAAGAAGAAAAGGAGGAAGACTAAAAACGAGGTCG 616
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 481 CCAAGGCTCGTGGGATTCCGTACAGGAAGAAGAAGAGGAGGAAGACTAAAAACGACGTCG 540
Query 617 TTGTTGTCAAGAAGGATGTTGCAAACTCTTCGACTCCTAATCAGTCGTTCACTTGATAAA 676
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TTGTTATCAAGAAGGATGTTGCAAACTCTTCGACTCCTAATCAGTCGTCCACTTGATAA- 599
Query 677 TTTATCATATAA-AAAATTT 695
|| ||||||| |||||||
Sbjct 600 TTAATCATATTTTAAAATTT 619
> Ahg927295 jgi|Araly1|927295|scaffold_202856.1
Length=617
Score = 93.5 bits (50), Expect = 2e-18
Identities = 155/203 (76%), Gaps = 17/203 (8%)
Strand=Plus/Plus
Query 406 TGTCCTCTCAAACAAGCTTGGGGAAGCCTAGATGCTTTGATCGGACGGCTAAGAGCTGCT 465
|||||| | |||||||| ||||| || |||||||||||||||||||||||||||| |||
Sbjct 328 TGTCCTTTGAAACAAGCGTGGGGGAGTTTAGATGCTTTGATCGGACGGCTAAGAGCGGCT 387
Query 466 TACGAGGA-ACACGGTGGCGGGTCACCTGATACTAACCCGTTTGCAAACGGGTCG-A-TC 522
| |||||| | |||| || | | || || | ||||| ||||| ||| || | |
Sbjct 388 TTCGAGGAGA-ACGGAGG-GT-TG-CCGGAGAGAAACCCTTTTGCCGGCGG--CGGAATT 441
Query 523 CGGGTTCA-CTTGAGGGAAGTGAGAGAATCTCAAGCCAAGGCTCGTGG-GATTCCGTACA 580
||||| || ||||||||||||||| || || || ||||| | || | |||||||||
Sbjct 442 AGGGTTTTTCT-GAGGGAAGTGAGAGATTCACAGGCGAAGGCAAGAGGAG-TTCCGTACA 499
Query 581 GGAAGAAG-AA-AAGGAGGAAGA 601
||| ||| || ||| |||||||
Sbjct 500 AGAA-AAGGAAGAAG-AGGAAGA 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5