BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18620.1 Length=495 Score E Sequences producing significant alignments: (Bits) Value Ahg946330 jgi|Araly1|946330|scaffold_702559.1 787 0.0 > Ahg946330 jgi|Araly1|946330|scaffold_702559.1 Length=535 Score = 787 bits (426), Expect = 0.0 Identities = 469/490 (96%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 1 ATGGAAAGTTCTAAGCAAAAACGATGTCGCTCTAGCGTAGTCGAGACCATTGAAGCACCA 60 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 21 ATGGAAAGTTCTAAGCAAAAACGATGTCACTCTAGCGTAGTCGAGACCATCGAAGCACCA 80 Query 61 TTACCACTAGTGTGGTCCATCCTACGTAGTTTCGACAAACCACAAGCTTATCAACGTTTC 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 81 TTACCACTAGTGTGGTCAATCCTACGTAGTTTCGACAAACCACAAGCTTATCAACGTTTC 140 Query 121 GTCAAAAGTTGCACCATGCGCTCTGGCGGCGGCGGCGGCAAAGGAGGAGAAGGAAAAGGC 180 ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| Sbjct 141 GTCAAAAGTTGCACCATGCGCTCCAGTGGCGGTGGCGGCAAAGGAGGAGAAGGAAAAGGC 200 Query 181 TCCGTCCGGGACGTGACGTTAGTCTCCGGCTTCCCGGCGGATTTCAGCACGGAGAGGCTC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 TCCGTCCGGGACGTGACGTTAGTCTCCGGCTTCCCGGCGGATTTCAGCACGGAGAGGCTC 260 Query 241 GAAGAGCTAGATGATGAGTCTCACGTGATGGTGGTAAGTATTATTGGCGGTAACCATAGG 300 ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 261 GAAGAGCTAGACGATGAGTCTCACGTGATGGTGATAAGTATCATTGGCGGTAACCATAGA 320 Query 301 CTTGTTAATTACAAATCGAAAACGAAGGTGGTCGCGTCGCCGGAGGATATGGCAAAGAAG 360 ||||||||||||||||||||||||| ||||||||||||||| |||||| || || ||||| Sbjct 321 CTTGTTAATTACAAATCGAAAACGACGGTGGTCGCGTCGCCCGAGGATGTGACAGAGAAG 380 Query 361 ACGGTGGTGGTGGAGAGTTACGTGGTGGATGTGCCGGAAGGAACTAGCGAGGAAGATAC- 419 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 381 ACGGTGGTGGTGGAGAGTTACGTGGTGGATGTGCCGGAAGGAAATAGCGAAGAAGATACG 440 Query 420 AATATTTTTTGTTGATAACATTATTCGGTATAACCTTACTTCACTTGCTAAGCTCACAAA 479 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 AA-ATTTTTTGTTGATAACATTATTCGGTATAACCTTACTTCACTTGCTAAGCTCACAAA 499 Query 480 GAAAATGATG 489 ||| |||||| Sbjct 500 GAAGATGATG 509 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17971282419 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5