BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18620.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946330 jgi|Araly1|946330|scaffold_702559.1 787 0.0
> Ahg946330 jgi|Araly1|946330|scaffold_702559.1
Length=535
Score = 787 bits (426), Expect = 0.0
Identities = 469/490 (96%), Gaps = 2/490 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAGTTCTAAGCAAAAACGATGTCGCTCTAGCGTAGTCGAGACCATTGAAGCACCA 60
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 21 ATGGAAAGTTCTAAGCAAAAACGATGTCACTCTAGCGTAGTCGAGACCATCGAAGCACCA 80
Query 61 TTACCACTAGTGTGGTCCATCCTACGTAGTTTCGACAAACCACAAGCTTATCAACGTTTC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TTACCACTAGTGTGGTCAATCCTACGTAGTTTCGACAAACCACAAGCTTATCAACGTTTC 140
Query 121 GTCAAAAGTTGCACCATGCGCTCTGGCGGCGGCGGCGGCAAAGGAGGAGAAGGAAAAGGC 180
||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 141 GTCAAAAGTTGCACCATGCGCTCCAGTGGCGGTGGCGGCAAAGGAGGAGAAGGAAAAGGC 200
Query 181 TCCGTCCGGGACGTGACGTTAGTCTCCGGCTTCCCGGCGGATTTCAGCACGGAGAGGCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCCGTCCGGGACGTGACGTTAGTCTCCGGCTTCCCGGCGGATTTCAGCACGGAGAGGCTC 260
Query 241 GAAGAGCTAGATGATGAGTCTCACGTGATGGTGGTAAGTATTATTGGCGGTAACCATAGG 300
||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 261 GAAGAGCTAGACGATGAGTCTCACGTGATGGTGATAAGTATCATTGGCGGTAACCATAGA 320
Query 301 CTTGTTAATTACAAATCGAAAACGAAGGTGGTCGCGTCGCCGGAGGATATGGCAAAGAAG 360
||||||||||||||||||||||||| ||||||||||||||| |||||| || || |||||
Sbjct 321 CTTGTTAATTACAAATCGAAAACGACGGTGGTCGCGTCGCCCGAGGATGTGACAGAGAAG 380
Query 361 ACGGTGGTGGTGGAGAGTTACGTGGTGGATGTGCCGGAAGGAACTAGCGAGGAAGATAC- 419
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 381 ACGGTGGTGGTGGAGAGTTACGTGGTGGATGTGCCGGAAGGAAATAGCGAAGAAGATACG 440
Query 420 AATATTTTTTGTTGATAACATTATTCGGTATAACCTTACTTCACTTGCTAAGCTCACAAA 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 AA-ATTTTTTGTTGATAACATTATTCGGTATAACCTTACTTCACTTGCTAAGCTCACAAA 499
Query 480 GAAAATGATG 489
||| ||||||
Sbjct 500 GAAGATGATG 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5