BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18630.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492995 jgi|Araly1|492995|fgenesh2_kg.7__2428__AT4G18630.1 2362 0.0
> Ahg492995 jgi|Araly1|492995|fgenesh2_kg.7__2428__AT4G18630.1
Length=1708
Score = 2362 bits (1279), Expect = 0.0
Identities = 1543/1666 (93%), Gaps = 35/1666 (2%)
Strand=Plus/Plus
Query 50 ACACAAAACAAAGACTCTGTTTGTTATTCTTCCTTCTTTTTGTTTTCAAGAATGGAGGGA 109
|||||||||| ||||||||||| ||| || ||| ||| | |||| |||||||||||||
Sbjct 33 ACACAAAACAGAGACTCTGTTTCTTA---TT-CTT-TTTCT-TTTTAAAGAATGGAGGGA 86
Query 110 AAGAAATTGAATTTGTATGCTCCATTACCATCAATCAGGCGAATTCCGTCTATGATAGAG 169
| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 87 AGGAAATTGAATTTGTATGCTCCATTACCATCAATAAGACGGATTCCGTCTATGATAGAG 146
Query 170 CGTTCAAGTGAGTTAGAGAATAAGAAGACGACGATTACAAGACCAGAGCTTCGATCATGT 229
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 147 CGTTCCGGTGAGTTAGAGAACAAGAAGACGACGATTACAAGACCAGAGCTTCGATCATGT 206
Query 230 CCGAGCACAAAACAAGAAACGCCGGTTTTTGTATTACCAGACCAGAGCTTTGATCATCTC 289
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 CCAAGCACAAAACAAGAAACGCCGGTTTTTGTATTACCAGACCAGAGCTTTGATCATCTC 266
Query 290 ACAGAACCAGCTTCAATTCCTTTTATGTGGGAACAAATCCCTGGAAAACCAAAAGATGAC 349
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 267 ACAGAACCAGCTTCAATTCCTTTTATGTGGGAACAAATCCCAGGAAAACCAAAAGATGAC 326
Query 350 ATGGCTACATTGATTCAAGAGTCAGGTCTACTAGAAACCGATGATGAAGAAGAAGACGAA 409
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 327 ATGGCTACATTGATTCAAGAATCAGGTTTACTAGAAACCGATGATGAAGAAGAAGAAGAC 386
Query 410 GTAGATGAAGATTTGGATACGGTTTCTTCAAATGTAAGCTTCTCTGTTAACTGCAGCACA 469
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 G-A-A-GAAGATTTGGATACGGTTTCTTCAAATGTAAGCTTCTCTGTTAACTGCAGCACG 443
Query 470 AGTGGAGTTAGCGAAATCGAGAAGACCGGTGAGAGATCTGATTGTGATGA-GAAGTCTAG 528
|||||||||||||||||||||||||||||||||| |||||||| |||||| | ||||||
Sbjct 444 AGTGGAGTTAGCGAAATCGAGAAGACCGGTGAGAAATCTGATTCTGATGATG-TGTCTAG 502
Query 529 AGAAAGTCTTGATCTAATGATGTCAAGATTCTTACCAGCTGCTAAAGCAATGGCTCTTCA 588
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 503 AGAAAGTCTTGATCTAATGATGTCGAGATTCTTACCAGCTGCTAAAGCAATGGCTCTTCA 562
Query 589 GACACATCAGAAACATCAATCTTCTTATAACTCTTCAGAGCAGAAGCTAATCACTCAGAA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 563 GACACATCAGAAACATCAATCTTCTTATAACTCTTCAGAGCAGAAGCTAATCACTCAAAA 622
Query 649 CAGAGAAGCTCTCGTAGCTCGTCAAAGAAGTCAACTGGTTGCAGAACATGAACATTTCGC 708
||||||||||||| || ||| ||||||||||| | || ||||||||||||||||||||
Sbjct 623 CAGAGAAGCTCTCCTAATTCGCCAAAGAAGTCAGTTAGTCGCAGAACATGAACATTTCGC 682
Query 709 CATTGTTCAGAGTCTTTACGATGACTTAAACATtgatgatgatactgaagacgacga-ga 767
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
Sbjct 683 CATTGTTCAGAGTCTTTATGATGATTTAAACATTGATGATGATACTGACGACGACGATG- 741
Query 768 atgatgatgatggtgatgatta-tggtcatgttgatCACAAGATCTACCCAGCTGAAGTT 826
|||||||| ||| ||| | || ||| ||| ||||||||||||||| ||| ||||||
Sbjct 742 ATGATGATTATGATGA-CAATAGCGGTGATGGTGATCACAAGATCTATCCA---GAAGTT 797
Query 827 ACCAAGAAAGCTTGCGGATTCTTGCCAAGGCTTTGTGCGAAGAACTCATTCAAGTTTCTA 886
|||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 798 ACCAAGAAAGTTTGTGGATTCTTGCCAAGGCTTTGTGCTAAGAACTCATTCAAGTTTCTA 857
Query 887 AACCCGGTTCCTTTGGATTCAGTATCAAACCGGTCTATGAAACATTCGGGTGATCAAACC 946
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 858 AACCCGGTTCCTTTGGATTCAGTATCAAACCGGTCTAAGAAACATTCGGGTGATCAAACC 917
Query 947 AGTTTACCAAACTGGTCAACTAGGCGTCTTTCCGGTTTTATCTCTCCGTACCGAACCTCT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 918 GGTTTACCAAACTGGTCAACTAGGCGTCTTTCCGGTTTTATCTCTCCGTACCGAACTTCT 977
Query 1007 TGTTCGGATTCCGGTTTTCTCGGAACTCCCGAGAAACCAGAGAGCTTCAAAAGGCTAAAC 1066
|||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 978 TGTTCGGATTCCGGTTTTATCGCAACTCCGGAGAAACCAGAGAGCTTCAAAAGGCTAAAC 1037
Query 1067 AGAGGAATAAGCAAGTCTCAAGAACTGTATCCAACAAGAACAAGAAGAGAGGTTCTTCCT 1126
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1038 AGAGGAATAAGCAAGTCTCAAGAACTGTATCCAACCAGAACAAGAAGAGAGGTTCTTCCT 1097
Query 1127 AATTACTCAAATTCTGGAGAGATCAAAATGTTTAGAAACTCGATCTCTACTCCTTCGAGG 1186
||||| || ||||||||||| |||| |||||||||||||||| |||| |||||| |||||
Sbjct 1098 AATTATTCGAATTCTGGAGAAATCAGAATGTTTAGAAACTCGGTCTCCACTCCTACGAGG 1157
Query 1187 ATCCAACGGACCACAATTCACGATTCTAGGTTTCTTGTTGAGGAAGTAAACAGAAGAAGG 1246
|||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1158 ATCCAACGTACGACAATTCACGATTCGAGGTTTCTTGTGGAGGAAGTAAACAGAAGAAGG 1217
Query 1247 AACAACAAGTCAGGGAATCTTCAAC-AAACATCGTCGGAATATACACCTGCGCTTTCTCC 1305
||| | | ||||||| |||||| | |||||||||||||||||||||| || ||||||||
Sbjct 1218 AACGATAGGTCAGGGCATCTTC-TCAAAACATCGTCGGAATATACACCCGCACTTTCTCC 1276
Query 1306 TCCTCCGTTACCGGAAACTCCGTCTCGTTCCTGGCTCGGACGAACCCTCCTACCGCCGGT 1365
||| ||||| || |||||||||||||| |||||||| ||| ||||||||||||||||| |
Sbjct 1277 TCCGCCGTTGCCAGAAACTCCGTCTCGATCCTGGCTTGGAAGAACCCTCCTACCGCCGTT 1336
Query 1366 GAACCCGAGACCGTACGGCGTCGTTTTAGGTCAAGTTGGTATCAAGAAACTGAATCAAGA 1425
|||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1337 AAACCCGAGACAACACGGTGTCGTTTTAGGTCAAGTTGGTAACAAGAAACTGAATCAAGA 1396
Query 1426 AGTTCTTGAATCTACGAAATGGGAAACGATCGTTAAAACATCGTATGTTCACAACGATCA 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 AGTTCTTGAATCTACGAAATGGGAAACGATCGTTAAAACATCGTATGTTCACAACGATCA 1456
Query 1486 CGCTCGTTATTCTCAGGAGCTGATTGTTTATCCATCTCGCCAGCAAAATACATAAAACCA 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 CGCTCGTTATTCTCAGGAGCTGATTGTTTATCCATCTCGCCAGCAAAATACATAAAACCA 1516
Query 1546 GACAAATTAC-T--TCTTGTTTTTACATTACAATT-AAGTTAATAAATAGTTTTAAGGTT 1601
|||||||||| | |||| |||||||| ||| || || |||||||||||||||||||||
Sbjct 1517 GACAAATTACATCATCTT-TTTTTACAGTACTATCGAA-TTAATAAATAGTTTTAAGGTT 1574
Query 1602 TGCCTCTTATTTTTCTTGTAGGCAACA-CA-AA-TGTACCCGAGATTGATTCTTTATGTT 1658
||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||
Sbjct 1575 TGCCTCTTATTTTTCTTGTAGGCAACAACATAAATGTACCCGAGATTGATTCTTTGTGTT 1634
Query 1659 TCAATATTTT-TGTGTGT-G-T---TATAATTGTGGCGTTTGTTTT 1698
||||| |||| ||||||| | | |||||||||||||||||||||
Sbjct 1635 TCAATTTTTTGTGTGTGTAGCTCAATATAATTGTGGCGTTTGTTTT 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5