BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18640.1
Length=2861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946328 jgi|Araly1|946328|scaffold_702557.1 3291 0.0
Ahg494398 jgi|Araly1|494398|fgenesh2_kg.8__214__AT5G45840.1 857 0.0
> Ahg946328 jgi|Araly1|946328|scaffold_702557.1
Length=2076
Score = 3291 bits (1782), Expect = 0.0
Identities = 1985/2082 (95%), Gaps = 17/2082 (1%)
Strand=Plus/Plus
Query 620 GTTGTAAAAAACCTTATAATGATGGGTTGTGGATTTCACTTCCCTTGGTTCTTCTTCTTG 679
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 7 GTTGT-AAAAACCTTATAATGATGGGTTGTGGATTTCGCTTCCCTTGGTTCTTCTTCTTG 65
Query 680 ATCATTGGCCTTCAAGCTCCTCTCTCATTGTCCCTCACTTCCCAAGGATCCGCATTGTTG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 ATCATTGGCCTTCAAGCTCCTCTCTCATTGTCCCTCACTTCCCAAGGATCCGCATTGTTG 125
Query 740 AAGTTCCGGGCAAGAGTCAACTCAGATCCTCATGGGACTCTTGCGAATTGGAATGTTTCT 799
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 126 AAATTCCGGGCAAGAGTGAACTCGGATCCTCATGGGACTCTTGCAAATTGGAATGTTTCT 185
Query 800 GGTATTAATGATCTCTGCTATTGGTCAGGGGTTACTTGTGTTGACGGTAAAGTGCAGATT 859
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GG---TAATGATCTCTGCTTTTGGTCAGGGGTTACTTGTGTTGACGGTAAAGTGCAGATT 242
Query 860 CTGGATCTTAGCGGATATTCTTTGGAAGGAACGTTAGCTCCTGAGCTTAGCCAATTGAGT 919
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 243 CTGGATCTTAGCGGATGTTCCTTGGAAGGAACGTTAGCTCCTGAGCTTAGCCAATTGAGT 302
Query 920 GACTTAAGATCTCTAATACTCTCTCGGAACCATTTCTCCGGTGGAATTCCAAAGGAGTAT 979
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 303 GATTTAAGATCTCTAATACTCTCTAGGAACCATTTCTCCGGTGGAATTCCAAAGGAGTAT 362
Query 980 GGGAGTTTCGAAAACTTGGAAGTCCTGGATTTGAGAGAGAATGATTTGAGCGGACAAATT 1039
||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 363 GGGAGTTTCGAAAACTTGGAAGTATTGGATTTGAGAAATAATGATTTGAGCGGACAAATT 422
Query 1040 CCACCTGAGCTAAGCAATGGCTTATCGCT-A-AAACACTTGTTGCTTTCTGGTAACAAAT 1097
|| | |||||||||| ||| ||| | || | ||||||||||||||||||||||||||||
Sbjct 423 CCGCTTGAGCTAAGCGATGACTTGT--CTAACAAACACTTGTTGCTTTCTGGTAACAAAT 480
Query 1098 TTTCGGA-TGATATGAGAATAAAGATCGTGAGACTTCAATCTTCGTATGAAGTTC-GGTT 1155
||| || ||||| ||||||||||||||||||||||||||| || ||||||| || ||||
Sbjct 481 TTT-TGAGTGATACGAGAATAAAGATCGTGAGACTTCAATCGTCCTATGAAG-TCTGGTT 538
Query 1156 AAAGAAGAGTCCAAAGTTATCACCTTTGGCTGTTCTCGGCTGTATTAACAGAAAACTTGG 1215
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAAGAATAGTCCAAAGTTATCACCTTTGGCTGTTCTCGGCTGTATTAACAGAAAACTTGG 598
Query 1216 ACACTGTGTTTCAAGAAACCGTATCATTCAAGTAAAAAAGGTAGAAGCTATTGTATTCCG 1275
||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 599 ACATTGTGTTTCAAGAAACCGAATCATTCGAGTAAAAAAGGTAGAAGCTATTGTATTCCG 658
Query 1276 GATCAAAGCAACCTCCAGACGTTTCTTGAAAGCATTCCCTAGCTTTTTGGAGGAAACTGA 1335
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 GATCAAAGCAACCTCCAGACGTTTCTTGAAAGCATTCCCTAGCTTTTTGGAGCAAACTGA 718
Query 1336 TATCTACAAACGACGTGAGCTACTCGAGGAGACAAGTAATTTAGCGGCTGAGCCTGCTCC 1395
||||| ||||||||||||| ||||||||||| |||||||||| | |||||||||||||||
Sbjct 719 TATCTTCAAACGACGTGAGTTACTCGAGGAGTCAAGTAATTTGGAGGCTGAGCCTGCTCC 778
Query 1396 TTCAGCTCCTAGTCCTTCTCCCGGGATTATAACTGAAGCTTCACCTCGAAGCAGCGGGTC 1455
||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 779 TTCCGCTCCTAGTCCTTCTCCCGAGATTATAACTGAAGCTTCCCCTCGAAGCAGCGGGTC 838
Query 1456 TTTCCCTGCAGTAACCAATGCAAAGAAGAGAAGACCACCTTTAGTCCCTCCTGTACCTTC 1515
|||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 839 TTTCCCTGCAGTAAGCAATGCAAAGAAGAGAAGACCGCCTTTACACCCTCCTTTACCTTC 898
Query 1516 TCCTGATAAGGGCAGTACTAGTCCTGATATCTCTAAGAATCAGCCACAAGATAATAAACA 1575
||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 TCCTGATAA--G-AACACTAGTCTTGATATCTCTAAGAATCAGCCACAAGATAATAAACA 955
Query 1576 GTCAAAAGGATCAAAACATGTATGGCTGTATGTGGTTATCGCGGTTGCTTCTTTCGTCGG 1635
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct 956 GTCAAAAGGATCAAAACATGTATGGCTGTATGTGATTATCGCCGTTTCTTCTTTCGTCGG 1015
Query 1636 TTTACTGATTATAGTAGCGGTTATCTTCTTCTGCCGGAAAAGAGCTGTCAAGAGCATAGG 1695
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1016 TTTACTGATTATAGTAGCGGTTATCTTCTTCTGCCGAAAAAGAGCCGTAAAGAGCATAGG 1075
Query 1696 TCCTTGGAAAACTGGTCTTAGTGGACAATTGCAGAAAGCTTTTGTTACCGGGGTACCAAA 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCCTTGGAAAACTGGTCTTAGTGGACAATTGCAGAAAGCTTTTGTTACCGGGGTACCAAA 1135
Query 1756 GCTCAATCGGTCTGAGCTTGAAACAGCGTGTGAAGATTTCAGCAACATCATAGAGACATT 1815
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 1136 GCTCAATCGGTCTGAGCTTGAAACAGCGTGTGAGGATTTCAGCAACATTATAAAGACATT 1195
Query 1816 TGACGGTTACACTGTGTATAAAGGAACATTGTCGAGTGGTGTTGAGATAGCGGTAGCTTC 1875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGACGGTTACACTGTGTATAAAGGAACATTGTCGAGTGGTGTTGAGATAGCGGTAGCTTC 1255
Query 1876 AACCGCGATTGCTGAATCTAAAGAATGGACAAGAGCCATGGAAATGGCATACCGTAGAAA 1935
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1256 AACCGCGATTGCTGAATCTAAAGAATGGACAAGGGCCATGGAAATGGCATACCGTAGAAA 1315
Query 1936 GATTGATAC-TCTGTCACGGATCAACCATAAGAACTTTGTGAATCTGATTGGATACTGCG 1994
||||||| | | | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1316 GATTGATGCAT-TATCACGGATCAACCATAAAAACTTTGTGAATCTGATTGGATACTGCG 1374
Query 1995 AAGAAGATGATCCTTTTAATAGGATGATGGTCTTTGAATATGCTCCAAATGGAACTCTTT 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AAGAAGATGATCCTTTTAATAGGATGATGGTCTTTGAATATGCTCCAAATGGAACTCTTT 1434
Query 2055 TCGAACATTTGCACGATAAGGAGACAGAGCATCTTGATTGGAGCGCACGGATGAGAATAA 2114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TCGAACATTTGCACGATAAGGAGACAGAGCATCTTGATTGGAGCGCACGGATGAGAATAA 1494
Query 2115 TAATGGGAACGGCTTACTGTCTTCAACATATGCACGGGATGAACCCGCCTATGGCTCATA 2174
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1495 TAATGGGAACGGCTTACTGTCTACAACATATGCACGCGATGAACCCGCCTATGGCTCATA 1554
Query 2175 CGGACTTCAATTCATCGGAAATCTACCTAACCGATGACTACGCAGCCAAGGTCTCGGAGA 2234
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CGGACTTCAACTCATCGGAAATCTACCTAACCGATGACTACGCAGCCAAGGTCTCGGAGA 1614
Query 2235 TTCCATTCAACTTAGAGGCAAGATTAAATCCGAAGAAACACGTGAGTGGAGACTTAGAGC 2294
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1615 TTCCATTCAACTTAGAGGCAAGATTAAATCCGAAGAAACATGTGAGTGGTGACTTAGAGC 1674
Query 2295 AAACGTCATTGTTACTACCTCCAGAACCGGAGGCTAACGTCCATAGCTTCGGAGTCCTGA 2354
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1675 AAACGTCATTGCTACTACCTCCAGAACCAGAGGCTAACGTCCATAGCTTCGGAGTCTTAA 1734
Query 2355 TGCTCGAAATCATCTCTGGAAAGCTCTCTTTCTCAGACGAATACGGATCTATCGAGCAAT 2414
|||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1735 TGCTCGAAATAATCTCCGGAAAGCTCTCTTTCTCAGACGATTACGGATCTATAGAGCAAT 1794
Query 2415 GGGCATCGAAGTACCTTGAAAAAGACGACTTGGGAGAGATGATAGATCCATCGTTAAAGA 2474
|||| || |||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1795 GGGCTTCAAAGTACCTTGAAAACGACGAATTAGGAGAGATGATAGATCCATCGTTAAAGA 1854
Query 2475 CATTCAAAGAAGAGGAGCTTGAAGTGATCTGCGATGTGATACGAGAATGTCTGAAAACAG 2534
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 CATTCAAAGAAGAAGAGCTTGAAGTGATCTGCGATGTGATACGAGAATGTCTGAAAACAG 1914
Query 2535 AACAGAGACAACGACCTTCAATGAAAGATGTAGCGGAACAACTGAAACAAGTTATCAACA 2594
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1915 AACAGAGACATCGACCTTCGATGAAAGATGTAGCGGAACAACTAAAACAAGTTATCAACA 1974
Query 2595 TAACTCCTGAGAAAGCTACTCCAAGATCCTCTCCTCTTTGGTGGGCAGAGCTCGAAATCT 2654
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 TAACTCCTGAAAAAGCTACTCCAAGATCCTCTCCTCTTTGGTGGGCAGAGCTCGAAATCT 2034
Query 2655 TGTCCTCTGAAGCTACTTGACCAATCAGAGGTTTCTCCTATT 2696
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 TGTCCTCTGAAGCTACTTGACCAATCAGAGGTTTCTCCTATT 2076
> Ahg494398 jgi|Araly1|494398|fgenesh2_kg.8__214__AT5G45840.1
Length=2010
Score = 857 bits (464), Expect = 0.0
Identities = 1090/1382 (79%), Gaps = 83/1382 (6%)
Strand=Plus/Plus
Query 1329 AAACTGA-TATCTACAAACGACGTGAGCTACTCGA-GGAGACAAGTAATTTAGCGGCTGA 1386
||||| | ||||| |||| | |||||| ||||||| ||| ||||| |||||||||||| |
Sbjct 668 AAACT-AGTATCTTCAAAAGGCGTGAGTTACTCGAGGGA-ACAAGCAATTTAGCGGCT-A 724
Query 1387 -GCCTGCTCCTTCA-GCTCCTAGTCCTTCTCCCGGGATTATAA-CTGAAGCT-TCACCTC 1442
||| || || | | || |||||||||||||| | |||| ||| | | || | | ||||
Sbjct 725 TGCCGGCGCC-TGATGCGCCTAGTCCTTCTCCTGAGATTGTAACCAG-AG-TGTTTCCTC 781
Query 1443 GAAGCAGCGGGTC-TTTCCCTGCAGTAACCAATGCAAAGAAGAGAAGACCACC-TTTAGT 1500
||||||||||||| |||||| ||| |||| |||||||||||||||| |||||| || | |
Sbjct 782 GAAGCAGCGGGTCTTTTCCC-GCATTAACTAATGCAAAGAAGAGAATACCACCATTGA-T 839
Query 1501 CCCTCCTGTACCTTCTCCTGATAAGGGCAGTACTAGTCCTGA-TATCTCTAA-GAAT-CA 1557
| ||||| | |||||||| | || ||| | | | ||| |||| | || ||
Sbjct 840 CTCTCCT-T--CTTCTCCT--TCTCCGC-CTACCA-ACAACACCATCGCTAATG-ATCCA 891
Query 1558 GCC-A-CAAGA-T--AATAAACAGTCAAAAGGATCAAAACATGTATGGCTGTATGTGGTT 1612
|| | || | | || ||| | || ||||| | || | || ||| ||||||| |||
Sbjct 892 -CCGAGGAA-ATTCGAAGAAA-AATCGAAAGGGTTTAAGGACGTTTGGTTGTATGTTGTT 948
Query 1613 ATCGCG-GTTGCTTCTTTCGTCG-GTTTACTGATTATAGTAGCGGTTATCTTCTTCTGCC 1670
|| | | |||||| ||||| | | | | ||||| || ||||||||||| ||||||| ||
Sbjct 949 ATTG-GTGTTGCTGCTTTCATAGCG-ATGCTGATAATTGTAGCGGTTATATTCTTCTTCC 1006
Query 1671 GGAAAAGAGCTGTCAAGAGCATAGGTCCTTGGAAAACTGGTCTT-AGTGGACAATTGCAG 1729
||||||||||||| ||||| |||||||| ||||| |||||| || |||||||||||||||
Sbjct 1007 GGAAAAGAGCTGTGAAGAGTATAGGTCCATGGAAGACTGGT-TTGAGTGGACAATTGCAG 1065
Query 1730 AAAGCTTTTGTTACCGGGGTACCAAAGCTCAATCGGTCTGAGCTTGAAACAGCGTGTGAA 1789
|||||||||||||| || ||||| ||||| || | |||||| || |||||||| ||||||
Sbjct 1066 AAAGCTTTTGTTACTGGTGTACCTAAGCTAAACCTGTCTGAACTAGAAACAGCCTGTGAA 1125
Query 1790 GATTTCAGCAACATCATAG-AGACATTTGACGGTTACACTGTGTATAAAGGAACATTGTC 1848
|||||||| || ||||| | || ||||||| ||||||||||| ||||||||||| |||||
Sbjct 1126 GATTTCAGTAATATCATTGAAG-CATTTGATGGTTACACTGTCTATAAAGGAACTTTGTC 1184
Query 1849 GAGTGGTGTTGAGATAGCGGTAGCTTCAACCGCGATTGCT-GAATCTAAAGAATGGACAA 1907
||||| |||||||| ||||| ||||||||||||||| | ||| ||| |||||||||||
Sbjct 1185 AAGTGGCGTTGAGATTGCGGTTGCTTCAACCGCGATT-TTGGAAACTAGAGAATGGACAA 1243
Query 1908 GAGCCATGGAAATGGCATACCGTAGAAAGATTGATACTCTGTCACGGA-TCAACCATAAG 1966
|||| ||||||||| | ||||| |||| ||||||||| ||||| || |||||||||||
Sbjct 1244 GAGCTATGGAAATGACTTACCGCAGAAGGATTGATACAATGTCA-AGAGTCAACCATAAG 1302
Query 1967 AACTTTGTGAATCTGATTGGATACTGCGAAGAAGATGATCCTTTTAATAGGATGATGGTC 2026
|||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||
Sbjct 1303 AACTTTGTGAATCTAATTGGATATTGCGAAGAAGATGAACCGTTTAATAGGATGATGGT- 1361
Query 2027 TTT-GAATATGCTCCAAATGGAACTCTTTTCGAACATTTGCACGATAAGGAGACAGAGCA 2085
||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1362 TTTCGAATATGCTCCAAATGGAACTCTTTTCGAACATTTGCACGATAAGGAAATGGAACA 1421
Query 2086 TCTTGATTGGAGCGC-ACGGATGAGAATAATAATGGGAACGGCTTACTGTCTTCAACATA 2144
||||||||||| ||| | ||||||| |||||||||||||| ||||| ||||| ||| |||
Sbjct 1422 TCTTGATTGGAACGCGA-GGATGAGGATAATAATGGGAACTGCTTATTGTCTGCAATATA 1480
Query 2145 TGCACGGGATGAACCCGCCTATGGCTCATACGGA-CTTCAATTCATCGGAAATCTACCTA 2203
|||||| | | || ||||| || | || || | ||| | |||| | ||||||| ||
Sbjct 1481 TGCACGAGCTTAATCCGCCAATCTCACACACTAAACTTGTCT-CATCAGCAATCTACTTA 1539
Query 2204 ACCGATGACTACGCAGCCAAGGTCTCGGAGA--TTCCATTCAACTTAGAGGCAAG-ATTA 2260
|| ||||| |||||||| |||||| ||||| |||| |||| | | | | | | ||
Sbjct 1540 ACAGATGATTACGCAGCAAAGGTC--GGAGAGGTTCCTTTCAGCGGACAAACCGGGAGTA 1597
Query 2261 AATCCGAAGAAACAC-G-TGAGTGGAGACTTAGAGCAAACGTCATTGTTACTACCTCCAG 2318
|| |||| |||| || | |||| || || ||||| ||| | | |||| | |||| || |
Sbjct 1598 AA-CCGA-GAAA-ACCGATGAGCGGTGATTTAGACCAATCTTTATTGCCATTACCACCTG 1654
Query 2319 AACCGGAGGCTAACGTCCATAGCTTCGGAGTCCTGATGCTCGAAATCATCTCTGGAAAGC 2378
|||| ||| |||| ||| ||||||| ||||| | ||||| || || |||||||||||||
Sbjct 1655 AACCAGAGACTAATGTCTATAGCTTTGGAGTATTAATGCTTGAGATAATCTCTGGAAAGC 1714
Query 2379 TCTCTT-TCTCAGACGAATACGGATCTAT-CGAGCAATGGGCATCGAAGTACCTTGAAAA 2436
|||| | ||||| ||| | ||||| || | | |||||||||| ||||| || || ||
Sbjct 1715 TCTCAGAT-TCAGAAGAAGAAGGATCAATTCTAA-AATGGGCATCAAAGTATCTGGAGAA 1772
Query 2437 AGACGACTTGGGAGAGATGATAGATCC-ATCGTTAA-AGACATTCAAAGAAGAGGAGCTT 2494
|| | ||| |||| ||||| ||||| | | ||| | || || |||||||| || |||
Sbjct 1773 TGATAATTTGAGAGATATGATTGATCCTA-CACTAACA-ACGTTTAAAGAAGAAGAACTT 1830
Query 2495 GAAG-TGATCTGCGATGTGATACGAGAATGTCTGAAAACA-GAAC-AGAGACAACGACCT 2551
|||| | || || || ||| | || | ||||||||| | || | | || ||| ||||
Sbjct 1831 GAAGCT-ATATGTGACGTGGCAAGACACTGTCTGAAA-CTTGA-CGAAAGCCAAAGACCA 1887
Query 2552 TCAATGAAAGATGT-AGCGGAACAACTGAAACAAGTTATCAACATAACTCCTGAGA-AAG 2609
|||||||||||| | || ||||| ||||| |||| || |||||| ||| || | |||
Sbjct 1888 AAAATGAAAGATGTGATCG-AACAATTGAAAGAAGTAATAAACATATCTCAAGA-ACAAG 1945
Query 2610 CTACTCCAAGA-TCCTCTCCTCTTTGGTGGGCAGAGCTCGAAATCTTGTCCTCTGAAGCT 2668
| || |||||| || ||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1946 CAACACCAAGACTC-TCTCCTCTTTGGTGGGCAGAGCTTGAGATCTTATCCTCTGAAGCT 2004
Query 2669 AC 2670
||
Sbjct 2005 AC 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107985844575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5