BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18650.1
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354881 jgi|Araly1|354881|fgenesh1_pg.C_scaffold_7002054 1011 0.0
> Ahg354881 jgi|Araly1|354881|fgenesh1_pg.C_scaffold_7002054
Length=687
Score = 1011 bits (547), Expect = 0.0
Identities = 649/696 (93%), Gaps = 15/696 (2%)
Strand=Plus/Plus
Query 27 ATGAGAAACCTAGTAGAAGAAAAGTTCCTAGAGTTCTATGAGAGTTGGGTTATTCAACTT 86
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAGAAACCTAGTAGAAGAAAAGTTCCTAGAGTTCTATGAGAGTTGGGTTATACAACTT 60
Query 87 GAGCTATATCTTCATCAACTTTTAATTGCTCATAACAATAACACTATGAGTGAGACCGAG 146
|||||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 61 GAGCTATATCTTCATCAACTTTTAATTG--C-T--C-ATAACACTATGAGTGAGACCGAG 114
Query 147 CTTCGA-CATTTGATCTCGAAGCTAACTACACATCACAAAGCTTATTATACAGCCAAATG 205
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 115 CTTCGAGC-TTTGATCTCGAAGCTAACTACACATCACAAAGCTTATTACACAGCCAAATG 173
Query 206 GGCAGCCATAAGAGAAGATGTCTTAGCTTT-TTTCGGATCAG-TTTGGTTAAACCCGTTA 263
|||||||||| |||||||||| |||||||| ||| ||| | | ||||| |||||||||||
Sbjct 174 GGCAGCCATAGGAGAAGATGTTTTAGCTTTCTTT-GGA-CCGATTTGGCTAAACCCGTTA 231
Query 264 GAGAATGCTTGCTCTTGGTTAACCGGATGGAAACCGTCGATGGTGTTTCGGATGGTTGAT 323
||||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 232 GAGAAAGCTTGCTTTTGGTTAACCGGATGGAAACCGTCTACGGTATTTCGGATGGTTGAT 291
Query 324 AGGCTGAGGAAG---TCGAGAGTGGTGCTTGTGGAGGCTCAGGTGAAGAAATTGGAGGAG 380
|||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 292 AGGCTGAGGAAGTACTCGAGGGTGGTGCTTGTGGAGGCTCAGGTGAGGAAATTGGAGGAG 351
Query 381 CTGAGAGTTAAGACCAAGTTCGATGAGCAAAAAATTGAGAGAGAGATGGAGCGGTATCAG 440
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 352 TTGAGAGTTAAGACCAAGTTCGATGAGCAAAAAATTGAGAGGGAGATGGAGCGGTATCAG 411
Query 441 GTGGCTATGGCTGATCGGAAAATGGTAGAGCTGGCGAGGCTTGGATGTCACGTCGGAGGA 500
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 412 GTGGCTATGGCTGATCGGAAGATGGTGGAACTGGCGAGGCTTGGATGTCACGTCGGAGGA 471
Query 501 GAATCGGTGATGGTGGTGGAGGCAGCGGTGAGAGGATTATCGATGGGTCTTGAGAAAATG 560
||||||||| |||||||||||||||||||||| |||||| ||| |||||||||||| |||
Sbjct 472 GAATCGGTGGTGGTGGTGGAGGCAGCGGTGAGGGGATTAGCGACGGGTCTTGAGAAGATG 531
Query 561 GTGAAGGCTGCGGATTGTGTGCGGCTGAAAACGCTTAAAGGTATATTAGACATTTTAACT 620
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 532 GTGAAAGCGGCGGATTGTGTGCGGCTGAAAACGCTTAAAGGTATTTTAGACATTTTAGCA 591
Query 621 CCACCGCAATGCGTTGAGTTTTTGGCAGCGGCGGCTACGTTTCAGGTTCAGTTACGTCGG 680
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CCACCACAGTGCGTTGAGTTTTTGGCAGCGGCGGCTACGTTTCAGGTTCAGTTACGTCGG 651
Query 681 TGGGGAAACCGAAGACATTATGTCACTCACTCCTGA 716
||||| |||||||||||| |||||||||||||||||
Sbjct 652 TGGGGGAACCGAAGACATAATGTCACTCACTCCTGA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29164031505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5