BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18660.1

Length=1393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329668 jgi|Araly1|329668|fgenesh1_pm.C_scaffold_7001895           577    9e-164


> Ahg329668 jgi|Araly1|329668|fgenesh1_pm.C_scaffold_7001895
Length=843

 Score =  577 bits (312),  Expect = 9e-164
 Identities = 419/471 (89%), Gaps = 6/471 (1%)
 Strand=Plus/Plus

Query  97   GGTTTAAGCATGGCGTTGGGTGAGACACGTGGTGGAATCGGAGGAGGAGAGTCGATGAGT  156
            ||| |||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct  376  GGTCTAAGCATGGCTTTGGGTGAGACACGTGGTGGAATCGGAGCAGGAGAGTCTAAGAGT  435

Query  157  GATCTTACGGCTGAACAGTTATTCAAGATCAACGAGCTTCATCTAAAAACGGTGGAGGCA  216
            |||||||||||||||||| || |||||||||||||||| ||||| |||||  |  |||||
Sbjct  436  GATCTTACGGCTGAACAGATAATCAAGATCAACGAGCTCCATCTGAAAACAATAAAGGCA  495

Query  217  GAGAACAAGCTGACTAAGGTATCCGCGAGCTTACAAGAAGACACGGCGGATACGCCTATC  276
            ||||| |||||||||||  | || || ||||||||||||||||||||||||| |||||||
Sbjct  496  GAGAATAAGCTGACTAAACTGTCGGCAAGCTTACAAGAAGACACGGCGGATATGCCTATC  555

Query  277  GCCGTTGCAGCGTTTTACAAAGAAGTAATCGGACAAGCTGACGTGGTGGTCGAGCGTGCG  336
            ||||| |||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||
Sbjct  556  GCCGTCGCAGCGTTTTACAAAGAAGTGATCGGACAAGCTGACATGGCGGTGGAGCGTGCG  615

Query  337  CTTGATAAGCATGAGGAGGACATGGGTGGTTTATTGGTTGAAGCAGATAAGCTGAGGATG  396
            |||||||||||||| ||||| |||| ||||||||||||| |||| || ||||||||| ||
Sbjct  616  CTTGATAAGCATGAAGAGGATATGGCTGGTTTATTGGTTCAAGCGGAAAAGCTGAGGTTG  675

Query  397  ACCACGTTGACCAAAATTGTTGACATTTTAACGGC-GGTTCAAGCTGCGGATTTTCTTCT  455
            ||||| ||||| ||||| ||||| || |||||||| || |||||| ||||||||||||||
Sbjct  676  ACCACATTGACTAAAATCGTTGATATATTAACGGCAGG-TCAAGCGGCGGATTTTCTTCT  734

Query  456  TGCCGGGAAAAAACTTCATTTGGCGATGCATGAGTGGGGAAAATCAAGAGAACATCGACG  515
             |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct  735  CGCCGGGAAAAAACTTCATTTGGCGATGCATGAGTGGGGAAGATCAAGAGAACATCGCCG  794

Query  516  GC-TTGAAGCTAGTGGTGGTGATTCCGGTGGA-AATGTTACCAGAGAGTAA  564
             | |||||||||||||||||||| ||  |||| || ||| || ||||||||
Sbjct  795  -CATTGAAGCTAGTGGTGGTGATACCATTGGAGAA-GTTGCCCGAGAGTAA  843



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52069364915


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5