BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18670.1
Length=3030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492992 jgi|Araly1|492992|fgenesh2_kg.7__2425__AT4G18670.1 1951 0.0
Ahg497051 jgi|Araly1|497051|fgenesh2_kg.9__16__AT4G13340.1 994 0.0
Ahg905564 jgi|Araly1|905564|Al_scaffold_0003_2692 966 0.0
> Ahg492992 jgi|Araly1|492992|fgenesh2_kg.7__2425__AT4G18670.1
Length=2467
Score = 1951 bits (1056), Expect = 0.0
Identities = 1268/1367 (93%), Gaps = 28/1367 (2%)
Strand=Plus/Plus
Query 1 ATGAAGACGAAGATGATGATGAAGAACACGtctctgatctttgttcttctttt--ta-tc 57
|||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |
Sbjct 1 ATGAAGACGAAGATGATGATGAAGAAGACGTCTCAGATCTTTGTTCTTCTTTTCACATTG 60
Query 58 accttcttcttcacaagtatctcttactctctttcacttactttcaATGGAGATCTCTCC 117
||||||||||||||| || || |||||||| |||| ||||||||||| ||||||||
Sbjct 61 TTCTTCTTCTTCACAAGCCTCACTCACTCTCTTCCACTCACTTTCAATGGCGATCTCTCA 120
Query 118 GACAATGAAGTCCGGCTAATCACACAACGTCAACTTCTCTACTTCCGCGACGAGTTCGGC 177
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 GACAACGAAGTCCGGCTAATCACACAACGTCAGCTTCTCTACTTCCGTGACGAGTTCGGC 180
Query 178 GACCGCGGCGAGAATGTCGACGTTGACCCATCTCTAGTCTTCGAGAATCCACGACTTCGA 237
||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |||
Sbjct 181 GACCGCGGCGAGAATGTCGTCGTTGATCCATCACTAGTCTTCGAGAATCCACGACTACGA 240
Query 238 AATGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCAAACAACTTC 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCAAACAACTTC 300
Query 298 ACAACAAACTGGATCGGTTCTGATGTTTGCAGTTACACCGGCGTTTACTGTGCTCCGGCT 357
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 ACAACAAACTGGATCGGTTCTGATGTTTGCAGTTACACCGGAGTTTACTGTGCTCCGGCG 360
Query 358 TTAGATAACCGCCGGATCCGTACCGTCGCCGGAATAGATCTAAACCACGCTGACATTGCT 417
|||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 361 TTAGATAATCGCCGGATCCGTACCGTCGCCGGAATAGATCTCAATCACGCTGATATTGCT 420
Query 418 GGTTATCTACCTCAAGAGCTTGGTTTGTTAACAGATCTCGCTTTGTTTCATATTAATTCA 477
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 GGTTATTTGCCTCAAGAGCTTGGTTTGTTAACAGATCTCGCTTTGTTTCATGTTAATTCA 480
Query 478 AACCGGTTTTGTGGAACCGTACCGCATCGGTTTAACCGTCTTAAGCTTTTATTCGAGCTT 537
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 481 AACCGGTTTTGTGGAACCGTACCGCATCGGTTTAATCGGCTTAAGCTTTTATTCGAGCTT 540
Query 538 GATCTCAGTAATAACCGGTTCGCCGGAATATTCCCTACTGTTGTCCTTCAGTTACCGTCG 597
|||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 541 GATCTCAGTAATAACCGGTTCGCCGGAATATTCCCTACCGTTGTACTCCAGTTGCCGTCG 600
Query 598 TTGAAGTTTCTGGATCTAAGGTTTAACGAATTCGAAGGACCTGTACCAAGAGAGCTCTTC 657
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 601 TTGAAGTTTCTGGATCTAAGGTTTAACGAGTTCGAAGGACCTGTGCCTAGAGAGCTCTTC 660
Query 658 AGCAAAGATCTTGATGCGATTTTTATCAACCATAACCGGTTCCGGTTTGAGTTACCGGAT 717
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 661 AGCAAAGATCTTGATGCGATTTTCATTAACCATAACCGGTTCCGGTTTGAGTTACCGGAT 720
Query 718 AATTTGGGAGATTCTCCGGTTTCCGTTATTGTTGTGGCGAATAATCATTTCCACGGTTGT 777
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 AATTTGGGAGATTCTCCGGTTTCCGTTATCGTTGTGGCGAATAATCATTTCCACGGTTGT 780
Query 778 ATTCCGACGAGTTTGGGTGATATGAGGAATCTTGAAGAGATCATCTTCATGGAA-AATGG 836
||||||||||||||||||||||||| |||||||||||||||||| || ||| || |||||
Sbjct 781 ATTCCGACGAGTTTGGGTGATATGAAGAATCTTGAAGAGATCATTTTTATG-AACAATGG 839
Query 837 GTTTAATTCTTGTTTACCGTCGCAGATCGGACGGTTGAAAAACGTAACGGTATTTGATTT 896
|||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 GTTTGATTCTTGTTTACCGCCGCAGATCGGACGGTTGAAAAACGTAACGGTTTTTGATTT 899
Query 897 CAGTTTTAACGAACTTGTTGGGTCGTTACCGGCGAGTATTGGCGGGATGGTTTCGATGGA 956
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 CAGTTTTAACGAACTGGTTGGGTCGTTACCGGCGAGTATTGGCGGGATGGTTTCGTTGGA 959
Query 957 GCAGTTAAATGTGGCGCATAATAGATTCTCTGGTAAGATTCCGGCGACTATTTGTCAGTT 1016
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 960 GCAGTTAAATGTGGCGCATAATAGATTCTCTGGTAGGATTCCGGCGAGTATTTGTCAGTT 1019
Query 1017 GCCGAGGTTGGAGAATTTCACTTTCAGTTATAATTTCTTCACTGGAGAGCCGCCGGTTTG 1076
|||||||||||||||||||||||||||||| ||||||||||| |||||||| || || ||
Sbjct 1020 GCCGAGGTTGGAGAATTTCACTTTCAGTTACAATTTCTTCACCGGAGAGCCACCCGTGTG 1079
Query 1077 TCTTGGGTTGCCTGGGTTTGATGATCGGCGGAATTGTTTGCCGGCGAGACCTGCGCAGAG 1136
||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 TCTCGGTTTGCCTGGGTTTGATGATCAGCGGAATTGTTTGCCGGCGAGACCTGCGCAGAG 1139
Query 1137 ATCACCAGGG-CAATGTGCGGCTTTCTCTTCTCTTCCGCCGGTGGATTGTGGTTCCTTTG 1195
||| || ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1140 ATCTCC-GGGACAATGTGCGGCTTTCTCTTCTCTTCCACCGGTGGATTGTGGTTCATTTG 1198
Query 1196 GATGTGGTCGTTCTACTCGGCCTCCAGTTGTTGTCCCATCACCGCCTACAACTCCGTCTC 1255
||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 1199 GATGTGGCCGTTCTACTCGGCCTCCGGTTGTAGTCCCGTCACCGCCGACAACTCCGTCTC 1258
Query 1256 CGGGTGGTTCTCCTCCTTCGCCTTCTATTTCTCCTAGTCCACCGATCACTGTCCCGTCAC 1315
| |||||||||||||||||||| ||| | |||||||||||||
Sbjct 1259 CAGGTGGTTCTCCTCCTTCGCC--------------GTC------T-ACTGTCCCGTCAC 1297
Query 1316 CGCCGACAACTCCATCTCCTGGTGGTTCTCCTCCTTCACCGTCTATT 1362
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1298 CGCCGACAACACCATCTCCTGGTGGTTCTCCTCCTTCACCGTCTATT 1344
Score = 630 bits (341), Expect = 1e-179
Identities = 459/511 (90%), Gaps = 27/511 (5%)
Strand=Plus/Plus
Query 2257 CCACCACCTCCACCAACGCCAATACACTCCCCTCCGCCACAATCACATCC-ACCGTGCAT 2315
||||||||||||||||||||| ||||| |||||||||||| ||||| || |||||||||
Sbjct 1900 CCACCACCTCCACCAACGCCACTACACCCCCCTCCGCCACCATCAC-CCCAACCGTGCAT 1958
Query 2316 AGAATACTCACCACCTCCACCTCCAACAGTCCATTATAATCCTCCACCACCACCATCACC 2375
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1959 AGAATACTCACCGCCTCCACCTCCAACAGTCCATTACAATCCTCCACCACCACCAACACC 2018
Query 2376 GGCGCACTACAGTCCTCCGCCTTCACCACCAGTTTACTACTACAATTCACCTCCACCTcc 2435
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||
Sbjct 2019 GGCGCACTACAGTCCTCCACCATCACCACCGGTTTACTACTACAATTCACCTCCACCACC 2078
Query 2436 accggctgtccactacagcccaccacctccaccggtaatacaccacagccaaccaccacc 2495
|||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 2079 ACCGGCTGTCCAGTACAGCCCACCACCTCCACCGGTAATTCACCACAGCCCACCACCACC 2138
Query 2496 acctccaATCTACGAAGGGCCACTACCGCCGATTCCCGGAATATCATACGCATCTCCTCC 2555
| |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 2139 AACTCCAATCTACGAAGGACCACTACCGCCGATTCCCGGAATATCATACGCTTCGCCTCC 2198
Query 2556 GCCGCCTCCCTTCTATTGATTCTTTTT-CAGAATGTTCTCAAAAGGGG-CCCACCACTTA 2613
||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 2199 GCCGCCTCCCTTCTATTGATTCTTTTTTCAGAATGTTCTCAAA-GGGGTCCCACCACTTA 2257
Query 2614 TGCCAAAACCCGAAAACGAAACGGTGTCGTGTCGTGTCAATAACACTTATCCGATTGATA 2673
|||||||||||||| |||||||||||||||||||||||||||| | | || |
Sbjct 2258 TGCCAAAACCCGAAGCCGAAACGGTGTCGTGTCGTGTCAATAAC--T---C---TT-A-- 2306
Query 2674 GAAACATGTAACACGGCGTCGTTTGACCATTTCTTGGAGAGAGATGTACGTGTTGGTGGT 2733
|| | |||||||||| ||||||||||||||| || |||||||| ||||||
Sbjct 2307 ----CA-----C--GGCGTCGTTTTCCCATTTCTTGGAGAGCGAGGTACGTGTCGGTGGT 2355
Query 2734 TGGGTATTCTCCGAAAGATTTATTTCGGTGA 2764
|||||||||||||||||||||||||||||||
Sbjct 2356 TGGGTATTCTCCGAAAGATTTATTTCGGTGA 2386
Score = 207 bits (112), Expect = 3e-52
Identities = 179/210 (85%), Gaps = 9/210 (4%)
Strand=Plus/Plus
Query 1994 CACCGCCTCAGACATATTCTCCCTTCCCGCCACCGCCACCTCCTCCGCCGCAAACATACT 2053
|||| |||| |||||| ||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 1688 CACCACCTCCGACATACTCTCCATTCCCATCGCCGCCACCTCCTCCGCCGCAAACATACT 1747
Query 2054 ATCCACCGCAACCATCTCCATCACAAC-CC-CCGCAATCTCCAATTTACGGCACTCCCCC 2111
|||||||||| ||| | ||| | |||| || |||||| ||||||||||| |||||||||
Sbjct 1748 ATCCACCGCAGCCAACACCA-C-CAACACCACCGCAAACTCCAATTTACTACACTCCCCC 1805
Query 2112 TCCTTCCCCTATACCTTACTTGCCGTCACCGCCTCAATTTGCATCCCCACCACCACCAG- 2170
|||||| ||| |||| ||| ||||||| |||| |||||| || || |||||||||||
Sbjct 1806 TCCTTCACCTCCACCTCACTCGCCGTCATCGCCCCAATTTTCA-CC--ACCACCACCAGT 1862
Query 2171 CCCCTTACTACTACAGCTCACCACAACCAC 2200
||||| |||||||||||||||||| |||||
Sbjct 1863 CCCCT-ACTACTACAGCTCACCACCACCAC 1891
Score = 189 bits (102), Expect = 1e-46
Identities = 132/146 (90%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 1690 CCATCAACTCCGCCAACTCCGATATCACCTGGTCAAAATTCACCGCCTATTATTCCTAGT 1749
||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1420 CCATCAACTCCACCAACTCCGATATCACCTGGTCAACATTCACCGCCTGTTATTCCTAGT 1479
Query 1750 CCACCGTTCACCGGCCCTTCTCCGCCGTCGTCACCTAGTCCTCCTTTACCGCCTGTTATT 1809
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1480 CCACCGTTCACAAGCCCTTCTCCGCCGTCGTCACCTAGTCCTCCTTCACCGCCTATTATC 1539
Query 1810 CCTAGTCCTCCCA--TTGTAGGCCCG 1833
|| ||||| || | || ||||||||
Sbjct 1540 CCCAGTCCGCC-AGGTT-TAGGCCCG 1563
Score = 145 bits (78), Expect = 2e-33
Identities = 90/96 (94%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 1525 TCATCGCCGACAACACCTTCTCCCGGTGGTTCTCCTCCTTCACCGTCTATTTCTCCTAGT 1584
||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1294 TCACCGCCGACAACACCATCTCCTGGTGGTTCTCCTCCTTCACCGTCTATTTCTCCTAGT 1353
Query 1585 CCTCCGATCACTGTCCCGTCTCCTCCGTCAACCCCA 1620
|||||||||||||||||||||||||| || || |||
Sbjct 1354 CCTCCGATCACTGTCCCGTCTCCTCCTTCCACGCCA 1389
> Ahg497051 jgi|Araly1|497051|fgenesh2_kg.9__16__AT4G13340.1
Length=1812
Score = 994 bits (538), Expect = 0.0
Identities = 875/1033 (85%), Gaps = 42/1033 (4%)
Strand=Plus/Plus
Query 198 CGTTGACCCATCTCTAGTCTTCGAGAATCC-ACGACTT-CGAAATGCTTACATAGCTCTT 255
|||||| || |||||| ||||||||||||| | || || ||||||||||| ||||||||
Sbjct 153 CGTTGATCCTTCTCTAATCTTCGAGAATCCGA-GA-TTACGAAATGCTTATATAGCTCTA 210
Query 256 CAAGCTTGGAAACAAGCTATTCTCTCTGATCCAAACAACTTCACAACAAACTGGATCGGT 315
||||||||||||||||| |||||||||||||||||||| ||||| | || ||||||||
Sbjct 211 CAAGCTTGGAAACAAGCGATTCTCTCTGATCCAAACAATTTCACTTCGAATTGGATCGGA 270
Query 316 TCTGATGTTTGCAGTTACACCGGCGTTTACTGTGCTCCGG-CTTTAGATAACCGCCGGAT 374
|| |||| || | |||||||| |||| |||| |||||| | || ||||| || |||
Sbjct 271 TCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTCCGGCCCTT-GATAATCGGAAGAT 329
Query 375 CCGTACCGTCGCCGGAATAGATCTAAACCACGCTGACATTGCTGGTTATCTACCTCAAGA 434
|||||||||||||||||| ||||| |||||||| || || ||||||||| ||||| ||||
Sbjct 330 CCGTACCGTCGCCGGAATCGATCTCAACCACGCCGATATCGCTGGTTATTTACCTGAAGA 389
Query 435 GCTTGGTTTGTTAACAGATCTCGCTTTGTTTCATATTAATTCAAACCGGTTTTGTGGAAC 494
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 390 GCTTGGTTTGTTATCAGATCTCGCTTTGTTTCATGTTAATTCAAACCGGTTTTGTGGTAC 449
Query 495 CGTACCGCATCGGTTTAACCGTCTTAAGCTTTTATTCGAGCTTGATCTCAGTAATAACCG 554
||||| || ||||||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 450 TGTACCACACCGGTTTAACCGGCTAAAGCTTTTATTCGAGCTTGATCTTAGTAACAACCG 509
Query 555 GTTCGCCGG-AATATTCCCTACTGTTGTCCTT-CAGTTACCGTCGTTGAAGTTTCTGGAT 612
|||||| || || ||| || || |||||| || || ||||| |||||||||||| | |||
Sbjct 510 GTTCGCTGGGAA-ATTTCCGACGGTTGTC-TTGCAATTACCATCGTTGAAGTTTTTAGAT 567
Query 613 CTAAGGTTTAACGAATTCGAAGGACCTGTACC-AAGAGAGCTCTTCAGCAAAGATCTTGA 671
|| ||||||| ||||| |||||| ||||||| || |||||| || || |||||||||||
Sbjct 568 CTCCGGTTTAATGAATTTGAAGGAACTGTACCGAA-AGAGCTTTTTAGTAAAGATCTTGA 626
Query 672 TGCGATTTTTATCAACCATAACCGGTTCCGGTTTGAGTTACCGGATAATTTGGGAGATTC 731
||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 627 CGCGATTTTTATAAACCATAACCGGTTCCGGTTTGAGTTACCGGAGAATTTTGGTGATTC 686
Query 732 TCCGGTTTCCGTTATTGTTGTGGCGAATAATCATTTCCACGGTTGTATTCCGACGAGTTT 791
|||||||| ||||||||| |||||||||| | ||||| |||||| | || |||||||
Sbjct 687 GCCGGTTTCGGTTATTGTTTTGGCGAATAACCGGTTCCATGGTTGTGTACCTTCGAGTTT 746
Query 792 GGGTG-ATATGAGGAATCTTGAA-GAGATCATCTTCATGGAA-AATGGGT-TTAATTCTT 847
|| || | |||| ||||||| || ||||||||||||||| || ||||| | |||||||||
Sbjct 747 GG-TGGAGATGAAGAATCTT-AACGAGATCATCTTCATG-AACAATGG-TCTTAATTCTT 802
Query 848 GTTTACCGTC-GCAGATCGGACGGTTGAAA-AACGTAACGGTATTTGATTTCAGTTTTAA 905
|||||||||| | | ||||||||||| ||| ||||| ||||| ||||| ||||||||||
Sbjct 803 GTTTACCGTCTG-ATATCGGACGGTT-AAAGAACGTGACGGTGTTTGACGTCAGTTTTAA 860
Query 906 CGAACTTGTTGGGTCGTTACCGGCGAGTATTGGCGGGATGGTTTCGATGGAGCAG-TTAA 964
||||||||||||| ||||||||| |||| |||| | |||||||||| |||||||| ||||
Sbjct 861 CGAACTTGTTGGGCCGTTACCGGAGAGTGTTGGTGAGATGGTTTCGGTGGAGCAGCTTAA 920
Query 965 ATGTGGCGCATAATA-GATTCTCTGGTAAGATTCCGGCGACTATTTGTCAGTTGCCGAGG 1023
|||||||||||||| | || || || ||||||||||||| |||||||||||| |||| |
Sbjct 921 -TGTGGCGCATAATAAG-TTGTCGGGGAAGATTCCGGCGAGTATTTGTCAGTTACCGAAG 978
Query 1024 -TTGGAGAATTTCACTT-TCAGTTATAATTTCTTCACTGGAGA-GCCGCCGGTTTGTCTT 1080
||| |||| ||||||| | ||||| |||||||| |||||||| || ||| || ||| ||
Sbjct 979 CTTG-AGAACTTCACTTAT-AGTTACAATTTCTTTACTGGAGAAGC-GCCTGTGTGT-TT 1034
Query 1081 G-GGTTGCCTGG-GTTTGATGATCGGCGGAATTGTTTGCCGGCGA-GACCTGCGCAGAGA 1137
| ||||||| || ||||||||||||| | ||||||||||||| || ||||||| ||||||
Sbjct 1035 GAGGTTGCC-GGAGTTTGATGATCGGAGAAATTGTTTGCCGG-GAAGACCTGCTCAGAGA 1092
Query 1138 TCACCAGGGCAATGTGCGGCTTTCTCT-TCTCTTCCGCCGGTGGATTGTGGTTCCTTTGG 1196
|| || || |||||| ||||| | | |||| |||||||||| ||||||| || ||| |
Sbjct 1093 TCGCCTGGTCAATGTAAAGCTTTTT-TGTCTCGTCCGCCGGTGAATTGTGGATCGTTTAG 1151
Query 1197 ATGTGGTCGTTCT 1209
|| |||||||||
Sbjct 1152 TTGCGGTCGTTCT 1164
> Ahg905564 jgi|Araly1|905564|Al_scaffold_0003_2692
Length=1479
Score = 966 bits (523), Expect = 0.0
Identities = 930/1122 (83%), Gaps = 46/1122 (4%)
Strand=Plus/Plus
Query 111 TCTCTCCGACAATGAAGTCCGGCTAAT-CACACAACGTCAACTTCTCTACTTCCGCGACG 169
||||||||||| |||||| | | || || || |||||||||||||||| ||||||||
Sbjct 99 TCTCTCCGACACCGAAGTCAGATTCATCCA-ACGCCGTCAACTTCTCTACTACCGCGACG 157
Query 170 AGTTCGGCGACCGCGGCGAGAATGTCGA-CGTTGACCCATCTCTAGTCTTCGAGAATCCA 228
||||||| |||||||| ||||| || | ||| || ||||||||| ||||||||||||||
Sbjct 158 AGTTCGGTGACCGCGGTGAGAAAGT-AACCGTAGATCCATCTCTAATCTTCGAGAATCCA 216
Query 229 CGACTTCGAAATGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCA 288
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 CGACTACGAAGTGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCT 276
Query 289 AACAACT-TCACAACAAACTGGATCGGTTCTGATGTTTGCAGTTACACCGGCGTTTACTG 347
|| || | |||| || |||||||| || |||| || | |||||||| |||| |||
Sbjct 277 AATAA-TATCACTGTTAATTGGATCGGATCCAATGTCTGTAACTACACCGGAGTTTTCTG 335
Query 348 TGCTCCG-GCT-TTAGATAACCGCCGGATCCGTACCGTCGCCGGAATAGATCTAAACCAC 405
| | | | ||| || |||||||| ||||||||||||||||||||| ||||| || |||
Sbjct 336 TTCAC-GAGCTCTT-GATAACCGGAAGATCCGTACCGTCGCCGGAATCGATCTCAATCAC 393
Query 406 GCTGACATTGCTGGTTATCTACCTCAAGAGCTTGGTTTGTTAACAGATCTCGCTTTGTTT 465
|| || || ||||| ||| ||||| ||||||||||||||||||||||||| |||||||||
Sbjct 394 GCCGATATCGCTGGGTATTTACCTGAAGAGCTTGGTTTGTTAACAGATCTAGCTTTGTTT 453
Query 466 CATATTAATTCAAACCGGTTTTGTGGAACCGTACCGCATCGGTTTAACC-GTCTTAAGCT 524
||| ||||||| || || || |||||||| || || ||| ||| || | | ||||||||
Sbjct 454 CATGTTAATTCGAATCGATTCTGTGGAACTGTTCCTCATAAGTTCAAGCAG-CTTAAGCT 512
Query 525 TTTATTCGAGCTTGATCTCAGTAATAACCGGTTCGCCGGAATA-TTCCCTACTGTTGTCC 583
||| |||||||||||||| ||||| || || |||||||||| | || || || || || |
Sbjct 513 TTTGTTCGAGCTTGATCTTAGTAACAATCGATTCGCCGGAA-AGTTTCCAACGGTGGTTC 571
Query 584 TTCAGTTACCGTCGTTGAAGTTTCTG-GATCTAAGGTTTAACGAATTCGAAGGACCTGTA 642
|||| || |||||||||||||| || ||||| ||||||| || || |||||| |||||
Sbjct 572 TTCATTTGCCGTCGTTGAAGTT-CTTAGATCTCCGGTTTAATGAGTTTGAAGGAACTGTA 630
Query 643 CC-AAGAGAGCTCTTCAGCAAAGATCTTGATGCGATTTTTATCAACCATAACCGGTTCCG 701
|| || |||||| || || ||| |||| ||||||||||| || |||||||||||||||||
Sbjct 631 CCGAA-AGAGCTTTTTAGTAAAAATCTAGATGCGATTTTCATTAACCATAACCGGTTCCG 689
Query 702 GTTTGAGTTACCGGATAATTTGGGAGATTCTCCGGTTTCCGTTATTGTTGTGGCGAATAA 761
||||||||||||||||||||| || |||||||||||||| ||||||||| | ||||||||
Sbjct 690 GTTTGAGTTACCGGATAATTTCGGTGATTCTCCGGTTTCGGTTATTGTTCTTGCGAATAA 749
Query 762 TCATTTCCACGGTTGTATTCCGACGAGTTTGGGTG-ATATGAGGAATCTTGAA-GAGATC 819
||||||||| |||||||||||||||||||||| || | |||| ||||||| || |||||
Sbjct 750 TCATTTCCATGGTTGTATTCCGACGAGTTTGG-TGGAGATGAAGAATCTT-AATGAGATT 807
Query 820 ATCTTCATGGAA-AATGGGTTT-AATTCTTGTTTACCGTCGCAGATCGGACGGTTGAAAA 877
|| |||||| || ||||| ||| ||||||||||||||| || | |||||| ||||||| |
Sbjct 808 ATTTTCATG-AATAATGG-TTTGAATTCTTGTTTACCGGCGGATATCGGAAGGTTGAAGA 865
Query 878 ACGTAACGGTATTTGAT-TTCAGTTTTAACGAACTTGTTGGGTC-GTTACCGGCGAGTAT 935
|||| ||||| |||||| || |||||||| || |||||||| || ||| ||| |||| |
Sbjct 866 ACGTGACGGTGTTTGATGTT-AGTTTTAATGAGCTTGTTGG-TCCGTTGCCGAAGAGTGT 923
Query 936 TGGCGGGATGGTTTCGATGGAGCAGTTAAATGTGGCGCATAATA-GATTCTCTGGTAAGA 994
||| || ||||| || | |||||||| |||||||| |||||| | || ||||| ||||
Sbjct 924 TGGTGGTATGGTGGCGGTTGAGCAGTTGAATGTGGCTCATAATCTG-TTATCTGGGAAGA 982
Query 995 TTCCGGCGACTATTTGTCAG-TTGCCGAGG-TTGGAGAATTTCACTT-TCAGTTATAATT 1051
||||||||| |||||||||| || |||| | ||| |||||||||||| | ||||||||||
Sbjct 983 TTCCGGCGAGTATTTGTCAGCTT-CCGAAGCTTG-AGAATTTCACTTAT-AGTTATAATT 1039
Query 1052 TCTTCACTGGAGA-GCCGCCGGTTTGTCTTG-GGTTGCCTGGGTTTGATGATCGGCGGAA 1109
|||| ||||| || || || || ||| ||| ||||||||| ||||||||||||| | ||
Sbjct 1040 TCTTTACTGGTGAAGCT-CCTGTGTGT-TTGAGGTTGCCTGAGTTTGATGATCGGAGAAA 1097
Query 1110 TTGTTTGCCGGCGA-GACCTGCGCAGAGATCACCAGGGCAATGTGCGGCTTTCTCT-TCT 1167
||||||||| | || ||||||| |||||||| || | |||||| | ||||||| | ||
Sbjct 1098 TTGTTTGCCTG-GAAGACCTGCTCAGAGATCTTCACGTCAATGTTCAGCTTTCT-TGTCA 1155
Query 1168 CTTCCGCCGGTGGATTGTGGTTCCTTTGGATGTGGTCGTTCT 1209
| ||||| ||||||||||| || ||||| ||||||||||||
Sbjct 1156 CGGCCGCCAGTGGATTGTGGATCTTTTGGTTGTGGTCGTTCT 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114423095980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5