BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18680.1
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492991 jgi|Araly1|492991|fgenesh2_kg.7__2424__AT4G18680.1 1011 0.0
> Ahg492991 jgi|Araly1|492991|fgenesh2_kg.7__2424__AT4G18680.1
Length=708
Score = 1011 bits (547), Expect = 0.0
Identities = 656/709 (93%), Gaps = 5/709 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTTACAAACTAAACACATAGATGATCTCAAAGAAGCACTCATGTGTCAACGAAAC 60
||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGGTTTACAAACTAAACACATAGAGGATCTCAAAGAAGCACTCATGTGTCAACAAAAC 60
Query 61 AACGATGACAAACTCGAAGACCTCGTTGGTAAAATCGTCAATGACTACCACACATATGCG 120
|||||| ||||| |||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 61 AACGATCACAAAGTCGAAGACCTAGTTGGTAAAATCGTCAATGACTTCCAAACATATGCA 120
Query 121 GGAAAACGATCAGAGCTCTCGTACCGATGCTGCGCTCACTACTTTGCACCGTCGTGGAAC 180
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 121 AGAAAACGATCAGAGCTCTCGCACCGATGCTGCGCTAACTACTTTGCACCGTCATGGAAC 180
Query 181 ACTCCTATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCCTATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGA 240
Query 241 CTTATATACGCACTTTGTGGATCCCAGGCCGAAACTCAGCTTTCTCAATATCTTCTTAAG 300
||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||||| |
Sbjct 241 CTTATATACGCGCTTTGTGGATCCCAGGCCGAAACTCTGCTTACTCAAAATCTTCTTCAT 300
Query 301 ATCGATGACGACTTCGATATAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAG 360
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCGATGAAAACTTTGACGTAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAG 360
Query 361 CTTGGAAAACTCAATGACTTGCATTTGGAGGTAATAAAGAAAGAAGACAAGATTACGAAG 420
|||| |||| ||||||| |||||| || | ||||||||||||||||||||||||||||||
Sbjct 361 CTTGAAAAAATCAATGAGTTGCATATGAAAGTAATAAAGAAAGAAGACAAGATTACGAAG 420
Query 421 ACATCTGCGAATTTTCAAGACGATGTGGCGGATTTGCCAATCGCGGATGTGGTG---CAT 477
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 ACATCTGCGAATTTTCAAGACGATGTGGCGGATATGCCAATCGCGGATGTGGTGGTGCAT 480
Query 478 GCTGATGTAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGAATGGCGGTTTTACTG 537
| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GGTGATGCAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGTATGGCGGTTTTACTG 540
Query 538 GCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGACGTTGTCACACCG 597
||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||
Sbjct 541 GCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGAGGTTATGACTCCG 600
Query 598 CTTCAAGCGGTGGAGTTTTTGCTTGCCGGAAAAAGATTACAGCTGT-CGTTGCACGACCG 656
||||||||| |||||||||||||||||| ||||||||||| || | |||||||||||||
Sbjct 601 GTTCAAGCGGCGGAGTTTTTGCTTGCCGGGAAAAGATTACA-CTTTTCGTTGCACGACCG 659
Query 657 GGGAAGAGTTAGAGCAGATGTTTGTGGAGGAGTGGGGGGCGCCGCTGTC 705
|||||||| |||||||||||||||||||||||| |||| || ||| |||
Sbjct 660 GGGAAGAGCTAGAGCAGATGTTTGTGGAGGAGTAGGGGACGACGCCGTC 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26037952311
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5