BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18680.1 Length=708 Score E Sequences producing significant alignments: (Bits) Value Ahg492991 jgi|Araly1|492991|fgenesh2_kg.7__2424__AT4G18680.1 1011 0.0 > Ahg492991 jgi|Araly1|492991|fgenesh2_kg.7__2424__AT4G18680.1 Length=708 Score = 1011 bits (547), Expect = 0.0 Identities = 656/709 (93%), Gaps = 5/709 (1%) Strand=Plus/Plus Query 1 ATGAGTTTACAAACTAAACACATAGATGATCTCAAAGAAGCACTCATGTGTCAACGAAAC 60 ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1 ATGGGTTTACAAACTAAACACATAGAGGATCTCAAAGAAGCACTCATGTGTCAACAAAAC 60 Query 61 AACGATGACAAACTCGAAGACCTCGTTGGTAAAATCGTCAATGACTACCACACATATGCG 120 |||||| ||||| |||||||||| |||||||||||||||||||||| ||| |||||||| Sbjct 61 AACGATCACAAAGTCGAAGACCTAGTTGGTAAAATCGTCAATGACTTCCAAACATATGCA 120 Query 121 GGAAAACGATCAGAGCTCTCGTACCGATGCTGCGCTCACTACTTTGCACCGTCGTGGAAC 180 |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| Sbjct 121 AGAAAACGATCAGAGCTCTCGCACCGATGCTGCGCTAACTACTTTGCACCGTCATGGAAC 180 Query 181 ACTCCTATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTCCTATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGA 240 Query 241 CTTATATACGCACTTTGTGGATCCCAGGCCGAAACTCAGCTTTCTCAATATCTTCTTAAG 300 ||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||||| | Sbjct 241 CTTATATACGCGCTTTGTGGATCCCAGGCCGAAACTCTGCTTACTCAAAATCTTCTTCAT 300 Query 301 ATCGATGACGACTTCGATATAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAG 360 |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATCGATGAAAACTTTGACGTAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAG 360 Query 361 CTTGGAAAACTCAATGACTTGCATTTGGAGGTAATAAAGAAAGAAGACAAGATTACGAAG 420 |||| |||| ||||||| |||||| || | |||||||||||||||||||||||||||||| Sbjct 361 CTTGAAAAAATCAATGAGTTGCATATGAAAGTAATAAAGAAAGAAGACAAGATTACGAAG 420 Query 421 ACATCTGCGAATTTTCAAGACGATGTGGCGGATTTGCCAATCGCGGATGTGGTG---CAT 477 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 421 ACATCTGCGAATTTTCAAGACGATGTGGCGGATATGCCAATCGCGGATGTGGTGGTGCAT 480 Query 478 GCTGATGTAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGAATGGCGGTTTTACTG 537 | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 481 GGTGATGCAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGTATGGCGGTTTTACTG 540 Query 538 GCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGACGTTGTCACACCG 597 ||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||| Sbjct 541 GCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGAGGTTATGACTCCG 600 Query 598 CTTCAAGCGGTGGAGTTTTTGCTTGCCGGAAAAAGATTACAGCTGT-CGTTGCACGACCG 656 ||||||||| |||||||||||||||||| ||||||||||| || | ||||||||||||| Sbjct 601 GTTCAAGCGGCGGAGTTTTTGCTTGCCGGGAAAAGATTACA-CTTTTCGTTGCACGACCG 659 Query 657 GGGAAGAGTTAGAGCAGATGTTTGTGGAGGAGTGGGGGGCGCCGCTGTC 705 |||||||| |||||||||||||||||||||||| |||| || ||| ||| Sbjct 660 GGGAAGAGCTAGAGCAGATGTTTGTGGAGGAGTAGGGGACGACGCCGTC 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26037952311 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5