BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18690.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492990 jgi|Araly1|492990|fgenesh2_kg.7__2423__AT4G18690.1 1443 0.0
Ahg492991 jgi|Araly1|492991|fgenesh2_kg.7__2424__AT4G18680.1 601 4e-171
> Ahg492990 jgi|Araly1|492990|fgenesh2_kg.7__2423__AT4G18690.1
Length=1042
Score = 1443 bits (781), Expect = 0.0
Identities = 962/1046 (92%), Gaps = 25/1046 (2%)
Strand=Plus/Plus
Query 1 ATTCACGAACTAACCAACGAAGAAAGATGGCGACTAGTTCTTCGAGTTATGGGATTGAAC 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 ATTCACGAACTAACCAACGAAGAGAGATGGCGACTAGTTCTTCGAGTTGTGGGATTGAAC 60
Query 61 AACTTCAAAAAGGATGTTACTATGAGTGGATGAGTGTGCAGGCTAAACACATAGTTGATC 120
||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 61 AACTTCAAAAAGGATGTTACTATGAGTGGATGAGTGTACAAGCTACACACATAGTTGATC 120
Query 121 TCAAAGAAGCACTCATGAGTCATCGATCCAAAGAAGATCACAAGCTTGAAGAACTCGTTG 180
||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 121 TCAAAGAAGCACTCACGAGTCATCGATCCAAAGACGATCACAAGCTTGAAGAAGTCGTAG 180
Query 181 GTAAAATCGTCAATGACTTCCAAAAATACACCGAAAAACGATCTGAGCTCTCTCGCCGAA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GTAAAATCGTCAATGACTTCCAAAAATACACCGAAAAACGATCCGAGCTCTCTCGCCGAA 240
Query 241 GCTGCTCAAGCTACTTTGCACCGTCGTGGAACTCTCCTCTAGAGAACGGTTTACTATGGA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GCTGCTCAAGCTACTTTGCACCGTCGTGGAACTCTTCTCTAGAGAACGGTTTACTATGGA 300
Query 301 TGGGAGGATGTCGTCCATCGTCTTTCATTAGAGTTATTTACTCTCTTTGTGGATCCCAAG 360
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGGAGGATGTCGTCCTTCGTCCTTCATTAGAGTTATTTACTCTCTTTGTGGATCCCAAG 360
Query 361 CCGAAACGCAGCTTTCTCAGTATCTTCTAAAGATCGATGAAAATGTCGAAGTAAACCATG 420
| |||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||| |
Sbjct 361 CTGAAACGCAGCTTTCTCAGTATCTTCTCAAGGTCGATGAAAACGTCGAAGAAAACCAAG 420
Query 421 GTGGTTCCATGAGTGATCTAAACGCGTCGCAGCTTGCAAAAATCAATGATTTGCATATAA 480
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GTGGTTCCATGAGTGATCTTAACGCGACGCAGCTTGCAAAAATCAATGATTTGCATATAC 480
Query 481 AGGTTATAGAGAAAGAGGACAAGATAACAAAGAAATCGGCGAATTTGCAAGAGAATGTTG 540
||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 481 AGGTTATAGAGAAGGAAGACAAGATAACAAAGAAATCGGCGAATCTGCAAGAGGATGTTG 540
Query 541 CGGATATGCCTATAGCCATCGCGGCTTATGCCACGGACTTGATGAATGGTGACGTGGTGG 600
||||||||||||| |||||||||||||| |||||||| ||| || ||||||||||| |||
Sbjct 541 CGGATATGCCTATCGCCATCGCGGCTTACGCCACGGATTTGGTGGATGGTGACGTGCTGG 600
Query 601 TGGAAGATGCTTTAGATAAGTATGAGGAGGGCATGGCGGTTTTAATGGTGGAAGCTGATA 660
|||| ||||||||||||||| | ||||||| |||||||||||||||| |||||||||||
Sbjct 601 TGGAGGATGCTTTAGATAAGCACGAGGAGGACATGGCGGTTTTAATGACGGAAGCTGATA 660
Query 661 AACTGAGGTTTGAGACGCTTAGGAAGATCGTGGATGTTGTTACGCCGGTTCAAGCGGCGG 720
| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || |
Sbjct 661 AGCTGAGGTTTGAGACGCTTAGGAAAATCGTGGAGGTTGTTACTCCGGTTCAAGCCGCTG 720
Query 721 AGTTTTTGCTCGCAGGGAAAAGATTACACATATCATTGCACGAGTGGGGAAGAGTTAGAG 780
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTTTTTACTCGCCGGTAAAAGATTACACATATCATTGCACGAGTGGGGAAGAGTTAGAG 780
Query 781 AAGAGCA-ACGTTTTGGGTGTGTACGTACGGATGCAGCGGCTGCCACGGGAGGAGCGGGA 839
||||| | |||||||| ||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 781 AAGAG-AGACGTTTTGAGTGTGCACGTACGGATGCAGCCGCTGCCACGGGAGGAGCAGGA 839
Query 840 ACCGAGAAGTCAAAGAGGTCAAGC---TTGTTGATGTGAGTTT-A-----AAGTTGAATA 890
||||||||||||||||| ||| || |||||||||||||| | | ||||||||||
Sbjct 840 ACCGAGAAGTCAAAGAGATCA-GCCACTTGTTGATGTGAGTGTGAGTTTGAAGTTGAATA 898
Query 891 TATATAACTTGTGTTATATTTGTCTATGTAGAGAT-A-A-A-A---TCG-T-GT-T-TAA 939
|||||||||||||| ||||||||||| |||||||| | | | | ||| | || | |||
Sbjct 899 TATATAACTTGTGTAATATTTGTCTAAGTAGAGATCATATATAAGATCGATCGTGTCTAA 958
Query 940 GTGTCTTTATGTGTAATATATGTATGAGAGAGTGCGGCTAGTTTCGAGATGATGCAAGCA 999
||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||
Sbjct 959 GTGTCTTTATGTGTAATATGTGTATGAGAGT-T-CGACTAGTTTCGAGATGATGCAAGCA 1016
Query 1000 TAAGCTTTTGCTTTTGTCTTATATAA 1025
||||||||||| ||||||||||||||
Sbjct 1017 TAAGCTTTTGCCTTTGTCTTATATAA 1042
> Ahg492991 jgi|Araly1|492991|fgenesh2_kg.7__2424__AT4G18680.1
Length=708
Score = 601 bits (325), Expect = 4e-171
Identities = 574/690 (83%), Gaps = 34/690 (5%)
Strand=Plus/Plus
Query 103 CTAAACACATAGTTGATCTCAAAGAAGCACTCATGAGTCATCGATCCAAAGAA-GATCAC 161
|||||||||||| ||||||||||||||||||||| |||| | | ||| || ||||||
Sbjct 14 CTAAACACATAGAGGATCTCAAAGAAGCACTCATGTGTCA---A-CAAAACAACGATCAC 69
Query 162 -AAGCTTGAAGAACTCGTTGGTAAAATCGTCAATGACTTCCAAAAATA--CACCGAAAAA 218
||| | ||||| || |||||||||||||||||||||||||||| ||| || |||||
Sbjct 70 AAAG-TCGAAGACCTAGTTGGTAAAATCGTCAATGACTTCCAAACATATGCAA-GAAAA- 126
Query 219 CGATCTGAGCTCTCTCGCCGAAGCTGCTC-AAGCTACTTTGCACCGTCGTGGAACTCTCC 277
||||| |||||||| | |||| ||||| | || ||||||||||||||| |||||||||||
Sbjct 127 CGATCAGAGCTCTCGCACCGATGCTGCGCTAA-CTACTTTGCACCGTCATGGAACTCTCC 185
Query 278 TCTAGAGAACGGTTTACTATGGATGGGAGGATGTCGTCCATCGTCTTTCATTAGAGTTAT 337
| |||||||| || | ||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 186 TATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGACTTAT 245
Query 338 TTACTCTCTTTGTGGATCCCAAGCCGAAACGCAGCTTTCTCAGTATCTTCTAAAGATCGA 397
||| | |||||||||||||| |||||||| | |||| |||| ||||||| | |||||
Sbjct 246 ATACGCGCTTTGTGGATCCCAGGCCGAAACTCTGCTTACTCAAAATCTTCTTCATATCGA 305
Query 398 TGAAAA-TGTCGAAGTAAACCATGGTGGTTCCATGAGTGATCTAAACGCGTCGCAGCTTG 456
|||||| | | || |||||||||||||||| |||||||||||| | |||| | |||||||
Sbjct 306 TGAAAACTTT-GACGTAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAGCTTG 364
Query 457 CAAAAATCAATGATTTGCATAT-AAAGGTTATAGAGAAAGAGGACAAGATAACAAAGAAA 515
|||||||||||| |||||||| |||| | ||| ||||||| |||||||| || |||| |
Sbjct 365 AAAAAATCAATGAGTTGCATATGAAAG-TAATAAAGAAAGAAGACAAGATTACGAAGACA 423
Query 516 TCGGCGAATTTGCAAGA-GAATGTTGCGGATATGCCTATAGCCATCGCGGCTTATGCCAC 574
|| |||||||| ||||| || ||| ||||||||||| | | |||||| |||
Sbjct 424 TCTGCGAATTTTCAAGACGA-TGTGGCGGATATGCC-A-A----TCGCGG---ATGT--- 470
Query 575 GGACTTGATGAATGGTGACGTGGTGGTGGAAGATGCTTTAGATAAGTATGAGGAGGGCAT 634
|| | | || ||||||| | | |||||| |||||||| |||||| |||| ||||| ||
Sbjct 471 GG--TGG-TGCATGGTGATGCAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGTAT 527
Query 635 GGCGGTTTTAATGGTGGAAGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATCGTGGA 694
|||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 528 GGCGGTTTTACTGGCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGA 587
Query 695 TGTTGTTACGCCGGTTCAAGCGGCGGAGTTTTTGCTCGCAGGGAAAAGATTACACATATC 754
||| | || |||||||||||||||||||||||||| || ||||||||||||||| | ||
Sbjct 588 GGTTATGACTCCGGTTCAAGCGGCGGAGTTTTTGCTTGCCGGGAAAAGATTACACTTTTC 647
Query 755 ATTGCACGAGTGGGGAAGAGTTAGAGAAGA 784
|||||||| ||||||||| ||||| |||
Sbjct 648 GTTGCACGACCGGGGAAGAGCTAGAGCAGA 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5