BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18710.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946319 jgi|Araly1|946319|scaffold_702548.1 1988 0.0
> Ahg946319 jgi|Araly1|946319|scaffold_702548.1
Length=1184
Score = 1988 bits (1076), Expect = 0.0
Identities = 1149/1185 (97%), Gaps = 1/1185 (0%)
Strand=Plus/Plus
Query 182 ctctctgtgtctctATCGCCATGGCTGATGATAAGGAGATGCCTGCTGCTGTAGTTGATG 241
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTGTGTCTCTATAGCCATGGCTGATGATAAGGAGATGCCTGCTGCTGTAGTTGATG 60
Query 242 GACATGATCAAGTCACTGGTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAAC 301
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GACATGATCAAGTCACTGGTCATATAATTTCCACCACAATCGGTGGCAAAAATGGTGAAC 120
Query 302 CAAAACAGACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATCG 361
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CAAAACAGACTATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGAATCG 180
Query 362 TTTTCCAAGCAAAATGTTTGGAGACTGGAGAAACCGTGGCGATAAAGAAGGTTTTGCAAG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTTCCAAGCAAAATGTTTGGAGACTGGAGAAACCGTGGCGATAAAGAAGGTTTTGCAAG 240
Query 422 ATAGAAGATACAAGAACCGAGAACTTCAGTTGATGCGTGTGATGGATCATCCGAATGTGG 481
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAGAAGATACAAGAACCGAGAACTTCAGTTGATGCGTGTGATGGATCATCCGAATGTGG 300
Query 482 TTTGTTTGAAGCATTGCTTCTTTTCGACTACAAGTAAAGACGAGCTTTTCTTGAACTTGG 541
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct 301 TTTGTTTGAAGCATTGCTTCTTTTCGACAACAAGTAAAGACGAGCTTTTCCTGAATTTGG 360
Query 542 TTATGGAGTATGTCCCTGAGAGCTTGTATCGAGTTCTGAAACATTATAGTAGTGCAAACC 601
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 361 TTATGGAGTATGTTCCTGAGAGCTTGTATCGAGTTCTGAAACACTATAGCAGTGCTAACC 420
Query 602 AAAGAATGCCTCTTGTCTATGTTAAACTTTACATGTATCAGATCTTCCGGGGACTTGCTT 661
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 421 AAAGAATGCCTCTTGTCTATGTTAAACTTTACATGTACCAGATCTTCCGGGGGCTTGCTT 480
Query 662 ACATTCACAATGTTGCTGGAGTTTGTCACAGAGATCTAAAGCCTCAAAATCTTCTGGTTG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACATTCACAATGTTGCTGGAGTTTGTCACAGAGATCTAAAGCCTCAAAATCTTCTGGTTG 540
Query 722 ATCCTCTTACTCATCAAGTCAAAATCTGTGACTTTGGCAGTGCGAAACAGCTCGTTAAAG 781
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCCTCTTACTCACCAAGTCAAGATCTGTGACTTTGGCAGTGCGAAACAGCTCGTTAAAG 600
Query 782 GTGAAGCCAACATTTCTTACATCTGCTCACGATTCTACCGTGCACCCGAGCTCATATTTG 841
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 601 GTGAAGCCAATATTTCTTACATCTGTTCACGATTCTACCGTGCACCTGAGCTCATATTTG 660
Query 842 GTGCCACTGAGTACACAACTTCTATTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 GTGCCACTGAGTACACAACTTCTATTGATATCTGGTCTGCTGGTTGTGTTCTTGCCGAGC 720
Query 902 TTCTTCTTGGTCAGCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTA 961
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 TTCTTCTCGGTCAGCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATAA 780
Query 962 TAAAAGTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTACACAG 1021
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 781 TAAAAGTTCTTGGTACACCAACTCGAGAAGAAATACGTTGTATGAATCCACATTACACAG 840
Query 1022 ATTTCAGGTTTCCACAGATAAAGGCACATCCCTGGCACAAGATCTTCCACAAAAGGATGC 1081
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 ATTTCAGGTTTCCACAGATAAAGGCACATCCGTGGCACAAGATCTTCCACAAAAGGATGC 900
Query 1082 CCCCAGAAGCGATTGATTTTGCATCAAGGCTGCTTCAATACTCTCCAAGTCTAAGATGCA 1141
| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 901 CTCCAGAAGCTATTGATTTTGCATCGAGGCTGCTTCAATACTCTCCAAGTCTTAGATGCA 960
Query 1142 CAGCGCTCGAAGCTTGTGCACATCCGTTCTTTGATGAACTCAGAGAACCAAACGCTCGTT 1201
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 961 CAGCACTCGAAGCTTGTGCCCATCCGTTCTTTGATGAACTGAGAGAACCAAACGCTCGTT 1020
Query 1202 TACCAAATGGACGGCCTTTCCCGCCTCTCTTCAACTTCAAACAAGAAGTAGCTGGATCAT 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 TACCAAATGGACGGCCTTTCCCGCCTCTCTTCAACTTCAAACAAGAAGTAGCTGGAGCAT 1080
Query 1262 CACCTGAACTGGTCAACAAGTTGATTCCAGACCATATCAAGAGACAATTGGGTCTAAGCT 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1081 CACCTGAACTGGTCAACAAGTTGATTCCAGACCATATCAAGAGACAATTGGGTCTAAGTT 1140
Query 1322 TCTTGAATCAATCTGGAACTTAAAAGGGATCCTGCAAAAGACAAC 1366
||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1141 TCTTGAATCAATCTGGAACATAAAAGG-ATTCTGCAAAAGACAAC 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5