BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18730.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946318 jgi|Araly1|946318|scaffold_702547.1 1033 0.0
Ahg948390 jgi|Araly1|948390|scaffold_800277.1 726 0.0
> Ahg946318 jgi|Araly1|946318|scaffold_702547.1
Length=608
Score = 1033 bits (559), Expect = 0.0
Identities = 595/612 (97%), Gaps = 4/612 (1%)
Strand=Plus/Plus
Query 37 TTTGCTCATCTCCTTCGATTTCGAACCCCTAATCTTGAGATGGCATCGGAGAAGAAGCTC 96
||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1 TTTACTCATCTCCTTCGATTTCGAACTCCTAATCTTGAGATGGCGTCGGAGAAGAAGCTC 60
Query 97 TCGAACCCTATGAGGGATATTAAGGTCCAGAAGCTAGTTCTTAACATCTCTGTTGGTGAG 156
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCGAACCCTATGAGGGATATTAAGGTTCAGAAGCTAGTTCTTAACATCTCTGTTGGTGAG 120
Query 157 AGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAACAGCTCAGTGGTCAGACTCCT 216
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 121 AGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAACAGCTCAGTGGTCAAACCCCT 180
Query 217 GTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTCGGTATCAGGCGTAATGAAAAGATT 276
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAAAAGATT 240
Query 277 GCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGCTTGAAA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGCTTGAAA 300
Query 337 GTGAAGGAATACGAGCTGTTGAGGAGGAACTTCAGTGACACTGGCTGCTTCGGATTCGGT 396
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GTGAAGGAATACGAGCTGTTGAGGAGGAACTTCAGTGACACTGGCTGCTTTGGATTCGGT 360
Query 397 ATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCCTTCTACCGGTATCTACGGTATG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCCTTCTACCGGTATCTACGGTATG 420
Query 457 GATTTCTACGTTGTTCTTGAACGTCCAGGATACCGTGTGGCCCGTCGCCGTAGATGCAAG 516
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 421 GATTTCTACGTTGTTCTTGAACGCCCGGGATACCGTGTTGCCCGTCGCCGTAGATGCAAG 480
Query 517 ACTCGCGTTGGTATTCAACATAGAGTTACCAAGGATGATGCCATGAAGTGGTTCCAAGTT 576
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTCGTGTTGGTATTCAACATAGAGTTACCAAGGATGATGCCATGAAGTGGTTCCAAGTT 540
Query 577 AAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACATCACTGGTTGAAGAGCttttttt 636
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 AAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACATCACTGGTTGAAGAG-TTTTTTT 599
Query 637 tgtcattttgtt 648
|||||||||
Sbjct 600 ---CATTTTGTT 608
> Ahg948390 jgi|Araly1|948390|scaffold_800277.1
Length=639
Score = 726 bits (393), Expect = 0.0
Identities = 506/561 (90%), Gaps = 5/561 (1%)
Strand=Plus/Plus
Query 76 ATGGCATCGGAGAAGAAGCTCTCGAACCCTATGAGGGATATTAAGGTCCAGAAGCTAGTT 135
||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| || |||
Sbjct 34 ATGGCGTCGGAGAAGAAGCTCTCAAACCCCATGAGGGACATTAAGGTTCAGAAACTTGTT 93
Query 136 CTTAACATCTCTGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAA 195
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 94 CTCAACATTTCCGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCAAAGGTGTTGGAA 153
Query 196 CAGCTCAGTGGTCAGACTCCTGTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTCGGT 255
|||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 154 CAGCTCAGTGGTCAAACCCCTGTCTTCTCCAAGGCGAGGTACACTGTGAGGTCTTTTGGT 213
Query 256 ATCAGGCGTAATGAAAAGATTGCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAG 315
|| ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 214 ATTAGGCGTAATGAGAAGATTGCGTGTTATGTGACTGTGAGAGGTGAGAAGGCAATGCAG 273
Query 316 CTTCTTGAGAGTGGCTTGAAAGTGAAGGAATACGAGCTG-TTGAGGAGGAACTTCAGTGA 374
|||||||||||||| |||||||| ||||| || ||||| || ||||||||||| |||||
Sbjct 274 CTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTT-AGGAGGAACTTTAGTGA 332
Query 375 CACTGGCTGCTTCGGATTCGGTATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCC 434
|||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 333 CACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAGTATGATCC 392
Query 435 TTCTACCGGTATCTACGGTATGGA-TTTCTACGTTGTTCTTGAACGTCCAGGATACCGTG 493
||| || ||||||||||| ||||| ||| |||||||| |||||||| |||||||||||||
Sbjct 393 TTCCACTGGTATCTACGGAATGGACTTT-TACGTTGTCCTTGAACGCCCAGGATACCGTG 451
Query 494 TGGCCCGTCGCCGTAGATGCAAGACTCGCGTTGGTATTCAACATAGAGTTACCAAGGATG 553
|||| |||||||| ||||||||| |||| ||||||||||| || ||||| || |||||||
Sbjct 452 TGGCTCGTCGCCGAAGATGCAAGGCTCGTGTTGGTATTCAGCACAGAGTAACTAAGGATG 511
Query 554 ATGCCATGAAGTGGTTCCAAGTTAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACA 613
|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 512 ATGCAATGAAATGGTTCCAGGTCAAGTATGAAGGAGTTATTCTCAACAAGTCTCAGAACA 571
Query 614 TCACTGGTTGAAGAG-Ctttt 633
||||||||| || || |||||
Sbjct 572 TCACTGGTTAAAAAGTCTTTT 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5