BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18760.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946315 jgi|Araly1|946315|scaffold_702544.1 2122 0.0
Ahg942362 jgi|Araly1|942362|scaffold_602906.1 616 2e-175
Ahg926969 jgi|Araly1|926969|scaffold_202530.1 616 2e-175
> Ahg946315 jgi|Araly1|946315|scaffold_702544.1
Length=1337
Score = 2122 bits (1149), Expect = 0.0
Identities = 1251/1300 (96%), Gaps = 8/1300 (1%)
Strand=Plus/Plus
Query 1 ATGAAACCTCCGTCGTTACCGTTActcctcctcctcctccacctctcagccactatctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAAACCTCCGTCGTTACCGTTACTCCTCCTCCTCCTCCACCTCTCAGCCACTATCTCC 80
Query 61 gccgctccttccctctctccaactccatctccaaccacctctcccattccacctcacaaa 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 81 GCCGCTCCTTCCCTCTCTCCAACTCCATCTCCAACCATCTCTCCCATTCCACCTCACAAA 140
Query 121 ccttcctcatcctctTCCCCATTAGACCCAAAACAACTCAAAGCCCTTGAATCTCTCAAC 180
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 141 CCTTCCTCCTCCTCTTCCCCATTAGACCCAAAACAACTCAAAGCCCTCGAATCTCTCAAC 200
Query 181 ATCCCCACCGTCAAAGATCCTTGCAACCACCGTCCCACCACCAAATCCACCTCCTCCTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 ATCCCCACCGTCAAAGATCCTTGCAACCACCGTCCCACCACCAAATCCACCTCCTCCTCC 260
Query 241 GTCGTAACCTGCGACACCAGCTCCCCATTTCGCCTCGTCACTTCCATCTCCTTCACAAAT 300
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 261 GTCGTAACCTGCGACACCAGCTCCCCATTTCGTCTCGTTACTTCCATCTCCTTCACAAAT 320
Query 301 TGctccaccgatctctccatctccacaacagctctcagagctctctcaccatctctaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TGCTCCACCGATCTCTCCATCTCCACAACAGCTCTCAGAGCTCTCTCACCATCTCTAACC 380
Query 361 tctctctctttcctcaactgtccttcactctcccctcctccacgtctccctgactcactc 420
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 381 TCTCTCTCTTTCCTCAACTGCCCATCTCTCTCACCTCCTCCACGTCTCCCTGACTCACTC 440
Query 421 cactccttcaccgccgtctcctccttcctccGCCGCCGTAATGGCCTCTCCGGAGTCTTC 480
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 441 CACTCCTTCTCCGCCGTCTCCTCCTTCCTCCGCCACCGTAATGGCCTCTCCGGAGTCTTC 500
Query 481 TTAGCTCGTCTCGTTAACCTCACTGACCTCACAGTCTCTTCTGTTCCAGTCTCAACCTCT 540
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 501 CTAGCTCGTCTCGTTAACCTCACTGACCTCACAGTCTCCTCTGTTCCTGTCTCAACCTCT 560
Query 541 GGTCTCTTCGTTATCCTAGGAAATATGCACGAGATCGTCTCTTTGACAATCTCACACGCA 600
||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 561 GGTCTCTTCGTTATCCTCGGAAATATGCACAAGATCGTCTCTTTGACAATCTCTCACGCA 620
Query 601 AATCTCTCCGGAAACATCCCTAAATCATTCCACTCAAATCTCACATTCATTGACTTATCA 660
||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 621 AATCTCTCCGGAAACATACCTAAATCTTTCCACTCAAATCTCACATTCATCGATTTATCA 680
Query 661 GACAATCT--ACTCAAAGGCTCAATACCCACTTCCATTACTCTGCTCTCAAACCTAAAGT 718
|| || || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GATAA-CTTGA-TCAAAGGCTCAATACCCACTTCCATTACTCTGCTCTCAAACCTAAAGT 738
Query 719 CTCTAAATTTATCCAAAAACACCATCTCCGGAGACATACCCGACTCAATCGGTGACCTAA 778
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 739 CTCTAAATTTATCCAAAAACTCCATCTCCGGCGACATACCCGACTCAATCGGTGACCTAA 798
Query 779 TCTC-CTTAAAAAACCTATCTTTATCCTCAAACAAGCTATCAGGACCAATCCCAGATTCA 837
|||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 799 TCTCACT-AAAAAACCTATCTTTATCCTCTAACAAGCTATCAGGACCAATCCCAGATTCG 857
Query 838 ATCTCATCCATTCCAGAGCTTACACACTTAGATCTGAGTGGGAACCAACTAAACGGCACC 897
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ATCTCGTCGATTCCAGAGCTTACACACTTAGATCTGAGTGGGAACCAACTAAACGGCACC 917
Query 898 ATTCCAAGATTCATCTCCAAAATGAAGTATCTCACACACTTGAATCTAGCTAACAATGCC 957
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 918 GTTCCAAGATTCATCTCCAAGATGAAGTATCTCACACACTTGAATCTAGCTAACAATGCC 977
Query 958 TTCCATGGAGTTCTACCATTCAATGCGAGCTTTATCAAGAATCTCGAAGTGTTCAAAATC 1017
||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 978 TTCCATGGAGTTCTACCGTTCAATGCTAGCTTCATCAAGAAACTCGAAGTGTTCAAAATC 1037
Query 1018 GGTGGAAACAGTGATCTTTGTTACAACCATAGTGTAT-TGTCATCGAAGATGAAATTGGG 1076
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1038 GGTGGAAACAGTGATCTTTGTTACAACCATAGTGT-TCTGTCATCGAAGATGAAATTGGG 1096
Query 1077 TATTGCTCAGTGTGATAAACATGGTTTGCCTTTGTCTCCACCGCCGCAGAAAGAAGATTC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1097 TATTGCTCAGTGTGATAAACATGGTTTGCCTTTGTCTCCACCGCCGCAGAAAGAAAATTC 1156
Query 1137 GAATTCAGATTATGATTACGGAAATGAAGATGATACTAGTGAGAAGAAGAAAGAAGAGCA 1196
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1157 GAATTCAGATTATGATTATGGTAATGAAGATGACACTAGTGAGAAGAAGAAAGAAGAGCA 1216
Query 1197 TCATGGTCCTAATAAAGTTGTGCTTGGTGTTGCTATTGGACTTTCTTCACTTGTGTTCTT 1256
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1217 TCATGGTCCTAATAAAGTTGTGCTTGGTGTTGCTATTGGACTCTCTTCGCTTGTGTTCTT 1276
Query 1257 AATCATCTTCATGATCCTTCTCGCCAAATGGTGTGGTTGA 1296
|||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GATCATCTTCATGATCCTTCTCGCCAAATGGTGTGGTTGA 1316
> Ahg942362 jgi|Araly1|942362|scaffold_602906.1
Length=565
Score = 616 bits (333), Expect = 2e-175
Identities = 431/478 (90%), Gaps = 7/478 (1%)
Strand=Plus/Plus
Query 545 TCTTCGTTATCCTAGGAAATATGCACGAGATCGTCTCTTTGACAATCTCACACGCAAATC 604
||||||||||| | ||||| ||| || |||||||||||||||||||||| ||||||||||
Sbjct 1 TCTTCGTTATCATCGGAAACATGAACAAGATCGTCTCTTTGACAATCTCTCACGCAAATC 60
Query 605 TCTCCGGAAACATCCCTAAATCATTCCACTCAAATCTCACATTCATTGACTTATCAGACA 664
||||||||| |||||| ||||| ||||||||||||||||| ||||| || ||||| ||||
Sbjct 61 TCTCCGGAATCATCCCAAAATCTTTCCACTCAAATCTCACTTTCATCGATTTATCTGACA 120
Query 665 ATCTACTCAAAGGCTCAATACCCACTTCCATTACTCTGCTCTCAAACCTAAAGTCTCTAA 724
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATCTACTCAAAGGCTCAATACACACTTCCATTACTCTGTTCTCAAACCTAAAGTCTCTAA 180
Query 725 ATTTATCCAAAAACACCATCTCCGGAGACATACCCGACTCAATCGGTGACCTAATCTC-C 783
|||||||||||||| | |||||||| ||||||||||| ||||||| |||||||| || |
Sbjct 181 ATTTATCCAAAAACTCTATCTCCGGCGACATACCCGATTCAATCGACGACCTAATATCAC 240
Query 784 TTAAAAAACCTATCTTTATC-CTCAAACAAGCTATCAGGACCAATCCCAGATTCAATCTC 842
|| || ||||||||||||| ||||| ||| |||||||||||||||||||| |||||||
Sbjct 241 -TAGAATACCTATCTTTATCATTCAAA-AAGGTATCAGGACCAATCCCAGATCCAATCTC 298
Query 843 ATCCATTCCAGAGCTTACACACTTAGATCTGAGTGGGAACCAACTAAACGGCACCATTCC 902
|| |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 299 CTCAATTCAAGAGCTTACACACTTAGATCTGAGTGGAAACCAACTAAACGGCACCGTTCC 358
Query 903 AAGATTCATCTCCAAAATGAAGTATCTCACACACTTGAATCTAGCTAACAATGCCTTCCA 962
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGATTCATCTCCAAGGTTAAGTATCTCACACACTTGAATCTAGCTAACAATGCCTTCCA 418
Query 963 TGGAGTTCTACCA-TTCAATGCGAGCTTTATCAAGAATCTCGAAGTGTTCAAAATCGG 1019
|||||||||||| || | ||| ||||| ||||| || ||||||||||||||||||||
Sbjct 419 TGGAGTTCTACCGGTT-A-TGCAAGCTTCATCAAAAACCTCGAAGTGTTCAAAATCGG 474
> Ahg926969 jgi|Araly1|926969|scaffold_202530.1
Length=565
Score = 616 bits (333), Expect = 2e-175
Identities = 431/478 (90%), Gaps = 7/478 (1%)
Strand=Plus/Plus
Query 545 TCTTCGTTATCCTAGGAAATATGCACGAGATCGTCTCTTTGACAATCTCACACGCAAATC 604
||||||||||| | ||||| ||| || |||||||||||||||||||||| ||||||||||
Sbjct 1 TCTTCGTTATCATCGGAAACATGAACAAGATCGTCTCTTTGACAATCTCTCACGCAAATC 60
Query 605 TCTCCGGAAACATCCCTAAATCATTCCACTCAAATCTCACATTCATTGACTTATCAGACA 664
||||||||| |||||| ||||| ||||||||||||||||| ||||| || ||||| ||||
Sbjct 61 TCTCCGGAATCATCCCAAAATCTTTCCACTCAAATCTCACTTTCATCGATTTATCTGACA 120
Query 665 ATCTACTCAAAGGCTCAATACCCACTTCCATTACTCTGCTCTCAAACCTAAAGTCTCTAA 724
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATCTACTCAAAGGCTCAATACACACTTCCATTACTCTGTTCTCAAACCTAAAGTCTCTAA 180
Query 725 ATTTATCCAAAAACACCATCTCCGGAGACATACCCGACTCAATCGGTGACCTAATCTC-C 783
|||||||||||||| | |||||||| |||||||| || ||||||| |||||||| || |
Sbjct 181 ATTTATCCAAAAACTCTATCTCCGGCGACATACCTGATTCAATCGACGACCTAATATCAC 240
Query 784 TTAAAAAACCTATCTTTATC-CTCAAACAAGCTATCAGGACCAATCCCAGATTCAATCTC 842
|| || ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 241 -TAGAATACCTATCTTTATCATTCAAA-AAGGTATCAGGACCAATCCCAGATTCAATCTC 298
Query 843 ATCCATTCCAGAGCTTACACACTTAGATCTGAGTGGGAACCAACTAAACGGCACCATTCC 902
|| |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 299 CTCAATTCAAGAGCTTACACACTTAGATCTGAGTGGAAACCAACTAAACGGCACCGTTCC 358
Query 903 AAGATTCATCTCCAAAATGAAGTATCTCACACACTTGAATCTAGCTAACAATGCCTTCCA 962
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGATTCATCTCCAAGGTTAAGTATCTCACACACTTGAATCTAGCTAACAATGCCTTCCA 418
Query 963 TGGAGTTCTACCA-TTCAATGCGAGCTTTATCAAGAATCTCGAAGTGTTCAAAATCGG 1019
|||||||||||| || | ||| ||||| ||||| || ||||||||||||||||||||
Sbjct 419 TGGAGTTCTACCGGTT-A-TGCAAGCTTCATCAAAAACCTCGAAGTGTTCAAAATCGG 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5