BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18770.1
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946314 jgi|Araly1|946314|scaffold_702543.1 2037 0.0
Ahg492981 jgi|Araly1|492981|fgenesh2_kg.7__2414__AT4G18780.1 438 6e-122
> Ahg946314 jgi|Araly1|946314|scaffold_702543.1
Length=1313
Score = 2037 bits (1103), Expect = 0.0
Identities = 1265/1337 (95%), Gaps = 35/1337 (3%)
Strand=Plus/Plus
Query 19 tttttCTCCTTT-CCAAAACAATGGAGAATTTCGTCGACGAGAATGGTTTTGCTT-CTCT 76
|||||||||||| |||||| ||||||||||||||||||||| |||| ||||| || ||||
Sbjct 1 TTTTTCTCCTTTCCCAAAA-AATGGAGAATTTCGTCGACGAAAATGCTTTTG-TTCCTCT 58
Query 77 AAACCAAAACATCTTCACACGTGATCAAGAACACATGAAAGAAGAAGATTTTCCATTCGA 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AAACCAAAACATCTTCACACGTGATCAAGAACACATGAAAGAAGAAGATTTTCCATTCGA 118
Query 137 AGTCGTCGACCAATCAAAACCTACAAGCTTTCTTCAAGATTTtcaccatcttgatcatga 196
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 119 AGTCGTCGACCAATCAAAACCCATTAGCTTTCTTCAAGATTTTCACCATCTTGATCATGA 178
Query 197 tcatcagtttgatcatcatcatcatcatggctcctcatcttcacatcCTTTGCTCAGCGT 256
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 179 TCATCAGTTTG---ATCATCATCATCATGGCTCCTCATCTTCACATCCTTTGCTC-G-GT 233
Query 257 --CCAAACTACGTCTTCTTGTATCAATAATGCTCCTTTCGAGCATTGCTCTTACCAAGAA 314
|||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 234 CACCAAGCAACGTCGTCTTGTATCAATAATGCTCCTTTCCAGCATTGCTCTTACCAAGAA 293
Query 315 AACATG-GTCGA-TTTCTATGAAACTAAACCAAATTTGATGAATCATCATCATTTCCAAG 372
|||||| | ||| ||| |||||||| |||||| |||||||| | |||||||||||||||
Sbjct 294 AACATGAG-CGAGTTT-TATGAAACCAAACCACATTTGATG-A--ATCATCATTTCCAAG 348
Query 373 CAGTGGAAAACTCATACTTCACTCGTAATCATCATCATCATCAAGAGATCAATTTGGTCG 432
||| |||||||||||||||||||| |||| | |||||||||||||||||||| ||||||
Sbjct 349 CAGCGGAAAACTCATACTTCACTCATAAT-A--ATCATCATCAAGAGATCAATATGGTCG 405
Query 433 ATGAACATGATGATCCTATGGACTTGGAGCAAAACAACATGATGATGATGAGGATGATCC 492
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 406 ATGAAC---ATGATCCTATGGACTTGGATCAAAACAACATGATGATGATGAGGATGATCC 462
Query 493 CTTTTGATTACCCTCCTACAGAGACTTTCAAACCTATGAACTTCGTAATGCCAGATGAAA 552
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 463 CTTTTGATTACCCTCCTACAGAGACTTTCAAACCTATGAACTTCGTGATGCCAGATGAAA 522
Query 553 TTTCATGTGTTTCTGCAGATAATGATTGTTATAGAGCAACAAGTTTCAACAAGACCAAAC 612
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 523 TTTCATGTGTTTCTGCAGATAATGATTGTTATAGAGCGACGAGTTTCAACAAGACCAAAC 582
Query 613 CATTTCTTACACGAAAGTTGTCTTCTTCTTCTTCATCATCATCATGGAAAGAAACCAAAA 672
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 583 CATTTCTTACACGCAAGTTGTCTTCTTCTTCTTCATCATCATCATGGAAAGAAAACAAAA 642
Query 673 AGTCAACCTTAGTCAAAGGACAATGGACTGCTGAAGAAGACAGGGTACTGATTCAACTCG 732
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 643 AGTCAACCTTAGTCAAAGGACAATGGACTTCTGAAGAAGACAGGGTACTGATTCAACTCG 702
Query 733 TGGAGAAGTATGGATTGCGTAAATGGTCGCATATCGCTCAAGTGTTACCGGGAAGAATCG 792
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 703 TGGAGAAGTATGGATTGCGAAAATGGTCGCATATCGCTCAAGTGTTACCGGGAAGGATCG 762
Query 793 GGAAACAATGTAGAGAGAGGTGGCATAACCATTTGAGACCTGACATTAAGAAAGAAACAT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GGAAACAATGTAGAGAGAGGTGGCATAACCATTTGAGACCTGACATTAAGAAAGAAACAT 822
Query 853 GGAGTGAAGAAGAGGACAGAGTGTTGATAGAATTTCACAAAGAGATTGGAAACAAATGGG 912
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GGAGTGAAGAAGAGGACAGGGTGTTGATAGAATTTCACAAAGAGATTGGAAACAAATGGG 882
Query 913 CAGAGATTGCGAAAAGACTCCCGGGAAGAACAGAGAACTCGATCAAGAACCATTGGAACG 972
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 883 CAGAGATTGCTAAAAGACTCCCTGGAAGAACAGAGAACTCGATCAAGAACCATTGGAACG 942
Query 973 CAACAAAAAGAAGACAATTCTCTAAAAGAAAATGTAGATCTAAGTATCCAAGACCTTCTC 1032
| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 943 CGACAAAACGAAGACAATTCTCTAAAAGAAAGTGTAGATCTAAGTATCCAAGACCTTCTC 1002
Query 1033 TGTTGCAGGATTACATCAAGAGCTTGAATATGGGAGCTTTGAT-GGCTTCTTCTGTTCCT 1091
| |||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||
Sbjct 1003 TATTGCAGGATTACATCAAGAGCTTGAATATGGGAGTTTTG-TCGGCTTCATCTGTTCCT 1061
Query 1092 GCAAGAGGTAGACGCAGAGAGAGTAATAACAAGAAGAAGGATGTTGTTGTT---GCGGTT 1148
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1062 GCAAGAGGTAGACGCAGAGAGAG---TAACAAGAAGAAGGATGTTGTTGTTGCCGCGGTT 1118
Query 1149 GAGGAGAAGAAGAAGGAAGAGGAGGTGTATGGACAAGACAGGATTGTGCCTGAATGTGTG 1208
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1119 GAGGAGAAGAAGAAGGAAGAGGAGATTTATGGACAAGACAGGATTGTGCCTGAATGTGTG 1178
Query 1209 TTTACTGATGATTTTGGATTCAATGAGAAGCTGCTTGAGGAAGGATGTAGCATTGACTCT 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TTTACTGATGATTTTGGATTCAATGAGAAGCTGCTTGAGGAAGGATGTAGCATTGACTCT 1238
Query 1269 TTGCTTGATGACATTCCTCAGCCTGACATTGATGCttttgttcatggactctgatttgta 1328
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1239 TTGCTTGATGACATTCCTCAGCCTGACATTGATGCTTTTGTTCATGGAATCTGATTTATA 1298
Query 1329 ttt-tttattctgcttg 1344
|| ||| || ||||||
Sbjct 1299 CTTCTTT-TT-TGCTTG 1313
> Ahg492981 jgi|Araly1|492981|fgenesh2_kg.7__2414__AT4G18780.1
Length=3204
Score = 438 bits (237), Expect = 6e-122
Identities = 257/267 (96%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 1603 ATCTTCTCTTAGCAATCGATCAAAAGACAGTTCAGAGAAAGGGAAGTCGTATCGGTTTTG 1662
||||||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 3030 ATCTTCTTTTAGCAATCGATCAAAAGACAGTTCTGTGAAAGGGAGGTCGTATCGGTTTTG 2971
Query 1663 GAGACGAAAGGATTGATACGAACCCAAACAAGTGAAAACACAGAAGCAAGCAAGATAGAC 1722
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2970 GAGACGAAAGGATTGATACGAACCCAAACAAGTGAGAACACAGAAGCAAGCAAGATAGAC 2911
Query 1723 CAGAGAATAACAATAGTAGGTGTTCTGTTTTGTCTTCCCATAAGACCTTTGAGGAATGGA 1782
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2910 CAGAGAATAACAATGGTGGGTGTTCTGTTTTGTCTTCCCATAAGACCTTTGAGGAATGGA 2851
Query 1783 TAAAGATGAAGAATCACCCAAAAGGCGAAAAATACCTTCCCAAACAAAGGTCCCCAAGCT 1842
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2850 TAAAGATGAAGAATCACCCAAAAGGCGAAAAACACTTTCCCAAACAAAGGTCCCCAAGCT 2791
Query 1843 TCATAACCTTTGTTAAGAGCGTCAGAG 1869
|||||||||||||||||||| ||||||
Sbjct 2790 TCATAACCTTTGTTAAGAGCATCAGAG 2764
Score = 283 bits (153), Expect = 3e-75
Identities = 168/175 (96%), Gaps = 1/175 (1%)
Strand=Plus/Minus
Query 1391 CCACCAAACTTCAATAATTTGAAAAGATATAAAATATTTTGCTTTTTAAAAACATGTTGA 1450
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 3204 CCACCAAACTTCAATAATTTGAAAAGAAATAAAATATTTTGCTTTTT-AAAACATGTTGA 3146
Query 1451 TGTTGAAACAATAGAAACCTAACTTGCGGAACCCGCCAAGACTTGTTGCTAAAATAAGAA 1510
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3145 AGTTGAAACAGTAGAAACCTAACTTGCGGAATCCGCCAAGACTTGTTGCTAAAATAAGAA 3086
Query 1511 CATTACTTAACTTGTGGCTCAAGCAACCATATGAAAATTTATAAAACAACCAAAA 1565
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 3085 CATTACTTAACTTGTGGCTCAAGCAACTATATGAAAACTTATAAAACAACCAAAA 3031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70200321535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5