BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18780.1
Length=3251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492981 jgi|Araly1|492981|fgenesh2_kg.7__2414__AT4G18780.1 4743 0.0
Ahg941250 jgi|Araly1|941250|scaffold_601794.1 444 2e-123
> Ahg492981 jgi|Araly1|492981|fgenesh2_kg.7__2414__AT4G18780.1
Length=3204
Score = 4743 bits (2568), Expect = 0.0
Identities = 2889/3044 (95%), Gaps = 21/3044 (1%)
Strand=Plus/Plus
Query 1 TGTTATCCATCCAAATCTCAATCCCTAATTAGGG-TTCATTTCTCTGTTTCTCCAAACAG 59
||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1 TGTTACCCATCCAAATCTCAATCCCTAATTAGGGTTTC-TTTCTCTG-TTCTCCAAACAG 58
Query 60 GGGAATTCGAAGATGATGGAGTCTAGGTCTCCCATCTGCAACACTTGTGGTGAAGAGATT 119
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 59 GGGAATTCGAAGATGATGGAGTCTAGGTCTCCGATCTGCAACACTTGCGGTGAAGAGATT 118
Query 120 GGTGTAAAATCAAACGGAGAGTTCTTTGTGGCTTGTCATGAGTGTAGTTTCCCGATCTGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGTGTAAAATCAAACGGAGAGTTCTTTGTGGCTTGTCATGAGTGTAGTTTCCCGATCTGC 178
Query 180 AAAGCTTGTCTTGAGTATGAATTCAAAGAAGGTCGAAGAATTTGCTTGCGTTGCGGCAAT 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 AAAGCTTGTCTTGAGTATGAATTCAAAGAAGGTCGACGAATTTGCTTGCGTTGCGGCAAT 238
Query 240 CCTTACGATGAGAATGTGTTTGATGATGTTGAGACAAAGACATCTAAAACTCAATCCATT 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CCTTATGATGAGAATGTGTTTGATGATGTTGAGACAAAGACATCTAAAACTCAATCCATT 298
Query 300 GTTCCAACACAGACCAATAACACTTCTCA---GGATTCAGGGATTCATGCTAGACATATA 356
||||||||||| | |||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 299 GTTCCAACACACATCAATAACACTCCTCAGGTGGATTCTGGGATTCATGCTAGACATATA 358
Query 357 AGTACAGTCTCAACAATAGACAGTGAACTGAATGATGAATATGGCAATCCAATTTGgaag 416
||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 359 AGTACAGTCTCTACAATAGACAGTGATCTGAATGATGAATATGGGAATCCAATATGGAAG 418
Query 417 aacagagtggagagctggaaagacaagaaagacaagaagagcaagaagaagaagaaagat 476
|||||||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 419 AACAGAGTTGAGAGCT-----G----GAAAGACAAGAAGAGCAAGAAGAAGAAGAAAGAT 469
Query 477 ccaaaagcaacaaaagCTGAACAACATGA-GGCTCAGATTCCTACCCAACAGCACATGGA 535
|||| ||||||||||||||| ||||||| || || ||||||| ||||||| ||||||||
Sbjct 470 TCAAAGGCAACAAAAGCTGAAGAACATGATGG-TCGGATTCCTTCCCAACAACACATGGA 528
Query 536 AGATACGCCACCGAACACAGAATCTGGTGCTACAGATGTGCTTTCGGTTGTGATTCCTAT 595
||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 529 AGATATGCCATCGAACACAGAGGCTGGTGCTACAGATGTGCTTTCGGTTGTGATTCCTAT 588
Query 596 CCCAAGGACAAAAATCACTTCATATAGGATTGTCATCATCATGCGGTTGATCATCTTGGC 655
||| |||||||| || |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 589 CCCGAGGACAAAGATTACTTCATACAGGATCGTCATCATCATGCGGTTGATCATCTTGGC 648
Query 656 TCTGTTTTTTAACTACCGTATCACGCATCCTGTCGATAGCGCTTACGGTTTATGGCTAAC 715
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 649 TCTGTTTTTCAACTACCGTATCACGCATCCTGTCGATAGTGCTTACGGTTTATGGCTAAC 708
Query 716 ATCTGTGATATGTGAGATTTGGTTTGCTGTTTCTTGGGTGTTGGATCAGTTCCCTAAATG 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TTCTGTGATATGTGAGATTTGGTTTGCTGTTTCTTGGGTGTTGGATCAGTTCCCTAAATG 768
Query 776 GTCTCCTATTAACCGAGAAACTTACATCGACCGGTTATCCGCAAGATTCGAAAGAGAAGG 835
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 769 GTCTCCTATTAACCGTGAAACTTACATCGATCGGTTATCCGCAAGATTCGAAAGAGAAGG 828
Query 836 CGAGCAATCACAGCTTGCAGCTGTAGATTTCTTTGTTAGTACGGTAGATCCATTAAAGGA 895
|||||| ||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 829 CGAGCAGTCACAGCTTGCAGCTGTAGATTTCTTTGTTAGTACAGTTGATCCGTTGAAGGA 888
Query 896 GCCACCTTTGATAACTGCAAACACGGTTCTTTCGATCCTCGCGCTT-GATTATCCGGTGG 954
|||||||||||| ||||||||||| ||||||||||||||||| || |||||||| ||||
Sbjct 889 GCCACCTTTGATCACTGCAAACACTGTTCTTTCGATCCTCGC-ATTAGATTATCCTGTGG 947
Query 955 ATAAAGTCTCTTGCTATGTATCTGATGATGGTGCTGCAATGCTTTCGTTTGAGTCTTTGG 1014
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 948 ATAAAGTCTCTTGCTATGTATCTGATGATGGTGCGGCGATGCTTTCATTTGAGTCTTTGG 1007
Query 1015 TTGAGACAGCAGATTTTGCTAGGAAATGGGTACCTTTCTGCAAAAAGTACTCCATCGAGC 1074
||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1008 TTGAGACTGCTGATTTTGCTAGGAAATGGGTACCTTTCTGCAAGAAGTACTCAATCGAGC 1067
Query 1075 CACGAGCTCCCGAGTTTTACTTCTCGCTTAAAATCGATTACTTGAGGGATAAAGTTCAAC 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CACGAGCTCCCGAGTTTTACTTCTCGCTTAAAATCGATTACTTGAGGGATAAAGTTCAAC 1127
Query 1135 CTTCTTTTGTGAAAGAACGTAGAGCCATGAAAAGAGATTATGAAGAGTTTAAAATAAGAA 1194
|||||||||||||||||||||||||||||||||||||||| || ||||| || || ||||
Sbjct 1128 CTTCTTTTGTGAAAGAACGTAGAGCCATGAAAAGAGATTACGAGGAGTTCAAGATTAGAA 1187
Query 1195 TGAATGCTTTAGTCGCCAAGGCTCAAAAGACACCAGAAGAAGGATGGACAATGCAAGATG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 TGAATGCTTTAGTCGCCAAGGCTCAAAAGACACCAGAAGAAGGATGGACAATGCAAGATG 1247
Query 1255 GAACATCTTGGCCCGGGAACAACACTCGTGACCATCCCGGGATGATTCAGGTTTTTCTTG 1314
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GAACCTCTTGGCCCGGAAACAACACTCGTGACCATCCCGGGATGATTCAGGTTTTTCTTG 1307
Query 1315 GATATAGCGGTGCTCGCGACATTGAAGGAAATGAACTTCCAAGATTAGTTTACGTCTCTA 1374
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1308 GATATAGCGGTGCTCGCGACATTGAAGGAAACGAACTTCCAAGATTAGTTTACGTCTCTA 1367
Query 1375 GAGAGAAGAGACCTGGTTATCAGCATCACAAAAAGGCCGGGGCAGAGAACGCATTGGTGA 1434
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1368 GAGAGAAGAGACCTGGCTATCAACATCACAAAAAGGCCGGGGCAGAGAATGCATTGGTGA 1427
Query 1435 GGGTGTCTGCGGTTTTAACGAATGCTCCATTCATTCTTAACCTTGATTGTGATCACTACG 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1428 GGGTGTCTGCGGTTTTAACGAATGCTCCATTCATTCTTAACCTTGATTGTGATCACTATG 1487
Query 1495 TCAACAATAGCAAAGCCGTGCGTGAAGCAATGTGCTTTTTAATGGATCCTGTTGTTGGTC 1554
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1488 TCAACAATAGCAAAGCTGTGCGTGAAGCGATGTGCTTTTTAATGGATCCTGTTGTTGGTC 1547
Query 1555 AAGACGTTTGCTTTGTTCAGTTCCCACAGAGATTTGATGGAATCGACAAGAGTGATCGAT 1614
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 AAGACGTTTGCTTTGTTCAATTCCCACAGAGATTTGATGGAATCGACAAGAGTGATCGAT 1607
Query 1615 ATGCTAACCGCAACATTGTTTTCTTCGATGTTAATATGAGAGGGCTTGATGGGATTCAAG 1674
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1608 ATGCTAATCGCAACATAGTTTTCTTCGATGTTAATATGAGAGGACTTGATGGGATTCAAG 1667
Query 1675 GTCCAGTTTATGTTGGTACAGGTACTGTCTTTAGAAGACAAGCACTTTACGGATACAGTC 1734
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1668 GTCCAGTTTATGTTGGTACAGGAACTGTCTTTAGAAGACAAGCACTATACGGATATAGTC 1727
Query 1735 CACCTTCAAAACCGAGGATTTTACCGCAATCTTCATCATCGTCGTGTTGCTGTCTAACCA 1794
||||||| |||||||||||||||||||||||||| || ||||| ||||||||| ||||||
Sbjct 1728 CACCTTCTAAACCGAGGATTTTACCGCAATCTTCTTCCTCGTCTTGTTGCTGTTTAACCA 1787
Query 1795 AGAAGAAACAACCTCAAGATCCTTCCGAGATTTACAAAGATGCAAAGCGAGAAGAACTTG 1854
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1788 AGAAGAAACAACCTCAAGATCCTTCCGAGATATACAAAGACGCAAAGCGAGAAGAACTTG 1847
Query 1855 ATGCTGCAATCTTTAATCTTGGGGACCTAGACAACTACGATGAGTACGACAGATCGATGC 1914
|||| || |||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1848 ATGCAGCGATCTTTAATCTTGGAGACCTAGACAACTACGATGAGTATGAAAGATCGATGC 1907
Query 1915 TGATTTCACAAACAAGCTTTGAGAAAACGTTTGGTCTCTCTACGGTTTTCATCGAGTCTA 1974
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1908 TGATTTCACAAACAAGCTTTGAGAAAACGTTTGGTCTCTCCGCGGTTTTCATAGAGTCTA 1967
Query 1975 CTCTTATGGAGAATGGCGGTGTTCCCGACTCTGTAAACCCGTCAACGCTCATCAAAGAAG 2034
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1968 CTCTTATGGAGAATGGCGGTGTTCCTGACTCTGTAAACCCGTCAACGCTCATCAAAGAAG 2027
Query 2035 CTATTCATGTCATTAGCTGTGGATACGAAGAGAAAACTGAATGGGGAAAAGAAATAGGAT 2094
||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2028 CTATTCATGTCATTAGCTGCGGATACGAAGAGAAAACCGAATGGGGAAAAGAAGTAGGAT 2087
Query 2095 GGATTTACGGGTCGATCACCGAAGACATTTTGACGGGTTTCAAGATGCATTGTCGTGGAT 2154
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 GGATTTACGGGTCGATCACGGAAGACATTTTGACGGGTTTCAAGATGCATTGTCGTGGAT 2147
Query 2155 GGAGGTCGATTTACTGTATGCCATTAAGACCAGCATTTAAAGGATCTGCTCCAATCAATC 2214
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2148 GGAGGTCTATTTACTGTATGCCATTAAGACCGGCTTTTAAAGGATCTGCTCCAATCAATC 2207
Query 2215 TATCAGATAGGCTTCACCAGGTTCTACGTTGGGCTCTTGGCTCGGTTGAGATCTTCCTTA 2274
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2208 TATCAGATAGGCTTCACCAGGTTCTGCGTTGGGCTCTTGGTTCGGTCGAGATCTTCCTTA 2267
Query 2275 GCCGACATTGTCCTTTGTGGTACGGTTGCAGCGGAGGCCGCCTCAAGTTGCTCCAGAGAT 2334
|||| ||||||||| | |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 2268 GCCGGCATTGTCCTCTATGGTACGGCTGCAGTGGAGGCCGTCTCAAGTTGCTCCAGAGAT 2327
Query 2335 TAGCTTATATAAACACTATTGTCTA-CCCATTCACTTCTTTGCCTCTTGTTGCTTACTGT 2393
|||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 2328 TAGCTTATATCAACACTATTGTTTATCCC-TTCACTTCTTTGCCTCTTGTTGCTTACTGT 2386
Query 2394 ACTCTTCCAGCTATTTGCCTTCTTACCGGCAAATTTATCATCCCAACGCTATCAAACCTA 2453
|||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2387 ACTCTTCCTGCTATCTGCCTTCTCACCGGCAAATTCATCATCCCAACGCTATCAAACCTA 2446
Query 2454 GCAAGCATGCTGTTTCTAGGTCTCTTTATATCAATCATCTTAACGAGTGTCCTCGAGCTT 2513
|||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 2447 GCAAGCATGCTGTTTCTAGGTCTCTTCATATCAATCATCTTAACAAGTGCCCTCGAGCTT 2506
Query 2514 CGATGGAGCGGAGTCAGTATCGAAGACTTATGGAGAAACGAACAGTTTTGGGTTATTGGA 2573
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2507 CGATGGAGCGGAGTGAGCATCGAAGACTTATGGAGAAACGAACAGTTTTGGGTTATTGGA 2566
Query 2574 GGTGTCTCAGCTCATCTCTTTGCCGTTTTCCAAGGATTCCTCAAAATGCTCGCTGGTCTC 2633
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2567 GGCGTCTCAGCTCATCTCTTTGCCGTTTTCCAAGGATTCCTCAAAATGCTCGCTGGTCTC 2626
Query 2634 GACACAAATTTCACAGTCACATCGAAAACCGCAGATGATTTAGAATTCGGTGAGCTTTAC 2693
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 2627 GACACAAATTTCACAGTCACGTCGAAAACCGCAGACGATTTAGAATTCGGTGAGCTCTAC 2686
Query 2694 ATTGTCAAATGGACAACTCTCTTGATCCCTCCGACGTCACTTCTTATAATCAACTTGGTC 2753
|| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 2687 ATCGTCAAATGGACAACTCTCTTGATCCCTCCGACATCACTTCTCATAATTAACTTGGTT 2746
Query 2754 GGAGTTGTTGCTGGATTCTCTGACGCTCTTAACAAAGGTTATGAAGCTTGGGGACCTTTG 2813
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2747 GGAGTCGTTGCTGGATTCTCTGATGCTCTTAACAAAGGTTATGAAGCTTGGGGACCTTTG 2806
Query 2814 TTTGGGAAGGTATTTTTCGCCTTTTGGGTGATTCTTCATCTTTATCCATTCCTCAAAGGT 2873
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2807 TTTGGGAAAGTGTTTTTCGCCTTTTGGGTGATTCTTCATCTTTATCCATTCCTCAAAGGT 2866
Query 2874 CTTATGGGAAGACAAAACAGAACACCTACTATTGTTATTCTCTGGTCTATCTTGCTTGCT 2933
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2867 CTTATGGGAAGACAAAACAGAACACCCACCATTGTTATTCTCTGGTCTATCTTGCTTGCT 2926
Query 2934 TCTGTGTTTTCACTTGTTTGGGTTCGTATCAATCCTTTCGTCTCCAAAACCGATACGACT 2993
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2927 TCTGTGTTCTCACTTGTTTGGGTTCGTATCAATCCTTTCGTCTCCAAAACCGATACGACC 2986
Query 2994 TCCCTTTCTCTGAACTGTCTTTTGATCGATTGCTAAGAGAAGAT 3037
|||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 2987 TCCCTTTCACAGAACTGTCTTTTGATCGATTGCTAAAAGAAGAT 3030
Score = 283 bits (153), Expect = 5e-75
Identities = 168/175 (96%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 3075 TTTTGGTTGTTTTATAAATTTTCATATGGTTGCTTGAGCCACAAGTTAAGTAATGTTCTT 3134
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3031 TTTTGGTTGTTTTATAAGTTTTCATATAGTTGCTTGAGCCACAAGTTAAGTAATGTTCTT 3090
Query 3135 ATTTTAGCAACAAGTCTTGGCGGGTTCCGCAAGTTAGGTTTCTATTGTTTCAACATCAAC 3194
||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 3091 ATTTTAGCAACAAGTCTTGGCGGATTCCGCAAGTTAGGTTTCTACTGTTTCAACTTCAAC 3150
Query 3195 ATGTTTTTAAAAAGCAAAATATTTTATATCTTTTCAAATTATTGAAGTTTGGTGG 3249
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3151 ATGTTTT-AAAAAGCAAAATATTTTATTTCTTTTCAAATTATTGAAGTTTGGTGG 3204
> Ahg941250 jgi|Araly1|941250|scaffold_601794.1
Length=3119
Score = 444 bits (240), Expect = 2e-123
Identities = 699/915 (76%), Gaps = 54/915 (6%)
Strand=Plus/Plus
Query 2021 GCTCATCAAAGAAGCTATTCATGTCATTAGCTGTGGATACGAAGAGAAAACTGAATGGGG 2080
|||| | || || || || |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 2097 GCTCCTTAAGGAGGCAATCCATGTCATAAGCTGCGGTTATGAAGACAAGACTGAGTGGGG 2156
Query 2081 AAAAGAAATAGGATGGATTTACGGGTCGATCACCGAAGACATTTTGACGGGTTTCAAGAT 2140
|| || | || ||||| || || || ||||| || || ||||||||||||||||||||
Sbjct 2157 AACTGAGCTGGGTTGGATCTATGGCTCTATCACAGAGGATATTTTGACGGGTTTCAAGAT 2216
Query 2141 GCATTGTCGTGGATGGAGGTCGATTTACTGTATGCCATTAAGA--CCAGCATTTAAAGGA 2198
|||||||||||| |||||||| |||||||| ||||| | |||| || ||||| |||||
Sbjct 2217 GCATTGTCGTGGCTGGAGGTCTATTTACTGCATGCC-T-AAGAGGCCTGCATTCAAAGGT 2274
Query 2199 TCTGCTCCAATCAATCTATCAGATAGGCTTCA-CCAGGTTCTACGTTGGGCTCTTGGCTC 2257
|| ||||| || ||||||||||| ||| || | ||||||| | |||||||| || || ||
Sbjct 2275 TCAGCTCCTATTAATCTATCAGACAGG-TTAAACCAGGTTTTGCGTTGGGCACTCGGATC 2333
Query 2258 GGTTGAGATCTTCCTT-AGCCGACATTGTCCTTTGTGGTACGGTTGCAGCGGAGGCCGCC 2316
|||||||| || || ||||| || ||||| | ||||| || | || |||||| |
Sbjct 2334 TGTTGAGATATTT-TTCAGCCGGCACAGTCCTCTCTGGTATGGCTACAAAGGAGGCAAAC 2392
Query 2317 TCAAGTTGCTCCAGAGATTAGCTTATATAAACACTATTGTCTACCCATTCACTTCTTTGC 2376
|||||| ||| || | || |||||| ||||| | ||||||| ||||| ||| | |
Sbjct 2393 TCAAGTGGCTTGAGCGTTTTGCTTATGCCAACACAACAATCTACCCGTTCACATCTATAC 2452
Query 2377 CTCTTGTTGCTTACTGTACTC-TTCCAGCTATTTGCCTTCTTACCGGCAAATTTATCAT- 2434
| || |||| ||||||| || ||||||| || || || ||||| | |||||| |||||
Sbjct 2453 CACTCCTTGCGTACTGTA-TCCTTCCAGCCATCTGTCTCCTTACTGACAAATTCATCATG 2511
Query 2435 CCCAACGCTAT-CAAACCTAGCAAG-CATGCTGT-TTC-TAGGTC-TC-TTTATATCAAT 2488
||| || || || | | || || | | || | ||| || || | ||||| || ||
Sbjct 2512 CCCC-CGATAAGCACAT-TCGCTAGTC-T-CT-TCTTCATA--TCATTGTTTATGTCGAT 2564
Query 2489 CATCT-TAACGAGTGTCCTCGAGCTTC-GATGGAGCGGAGTCAGTATCGAAGACTTATGG 2546
||| | ||||| | || | || || ||||||| ||||| || || || || | |||
Sbjct 2565 CAT-TGTAACGGGAATCTTGGAA-TTGAGATGGAGTGGAGTTAGCATTGAGGAATGGTGG 2622
Query 2547 AGAAACGAACAGTTTTGGGTTATTGGAGGTGTCTCAGCTCATCTCTTTGCCGTTTTCCAA 2606
|||||||| || || ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct 2623 AGAAACGAGCAATTCTGGGTCATTGGAGGAATCTCAGCTCATCTCTTTGCTGTTGTCCAA 2682
Query 2607 GGAT-TCCTCAAAATGCTC-GCTGGTC-TCGACACAAATTTCACAGTCACATCGAAAACC 2663
|| | |||||||||| || || || | | |||||||| |||||||||||||| ||| |
Sbjct 2683 GG-TCTCCTCAAAAT-CTTAGCAGG-CATTGACACAAACTTCACAGTCACATC-AAAGGC 2738
Query 2664 G-CAGATGATT-TAGAATTCGGTGAGCTTTACATTGT-CAAATGGACAACTCT-CTTGAT 2719
|||||||| | || || || || |||||| || |||||||||||| || ||| ||
Sbjct 2739 AACAGATGATGAT-GACTTTGGAGAACTTTACGC-GTTCAAATGGACAACACTGCTT-AT 2795
Query 2720 CCCTCCGACGTCACT-TCTTA-TAATCAAC-TTGGTCGGAGTTGTTGCTGG-ATTCTCTG 2775
|||||| || ||| ||||| | || ||| ||| |||| |||||||| || || ||| |
Sbjct 2796 CCCTCCAACA--ACTGTCTTAATCATAAACATTG-TCGGCGTTGTTGCAGGCAT-CTCAG 2851
Query 2776 ACGCTC-TTAACAAAGGTTATGAAG-CTTGGGGACCTTTGTTTGGGAAGGTATTTTTCGC 2833
| || | ||||||| || || | | ||||||||||| | ||||| || | || ||| |
Sbjct 2852 ATGC-CATTAACAATGGATACCA-GTCTTGGGGACCTCTATTTGGTAAACTCTTCTTCTC 2909
Query 2834 CTTTTGGGTGATTCTTCATCTTTATCCATTCCTCAAAGGTCTTATGGGAAGACAAAACAG 2893
||||||||| ||| ||||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct 2910 CTTTTGGGTCATTGTTCATCTCTACCCATTCCTCAAAGGTCTGATGGGAAGACAGAACAG 2969
Query 2894 AACACCTACTATTGT 2908
|||||| || |||||
Sbjct 2970 AACACCAACCATTGT 2984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122697615352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5