BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18790.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492980 jgi|Araly1|492980|fgenesh2_kg.7__2413__AT4G18790.1 2501 0.0
Ahg496866 jgi|Araly1|496866|fgenesh2_kg.8__2682__AT5G67330.1 483 2e-135
> Ahg492980 jgi|Araly1|492980|fgenesh2_kg.7__2413__AT4G18790.1
Length=1590
Score = 2501 bits (1354), Expect = 0.0
Identities = 1518/1597 (95%), Gaps = 11/1597 (1%)
Strand=Plus/Plus
Query 1 ATGACGGGA-TCCACCGTTTCCCGCCAAGAAAACAGCCCTAAGA-GACCAAACGACAGTA 58
||||| ||| || |||||||||||||||||||| ||||| || | |||| ||||||||||
Sbjct 1 ATGAC-GGATTCTACCGTTTCCCGCCAAGAAAATAGCCC-AAAACGACCTAACGACAGTA 58
Query 59 ACGGCGAATTCAAACGTCTATTAGTTCCCGAAACCTCTCAGCCAGAGGAGGACGAGCTTC 118
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 59 ACGGCGAATTCAAACGTCTATTAGTTCCCGAAACCTCTCAGCC---GGAGGACGAGCGCC 115
Query 119 ACGAATCGCCACCGGAGAATCAGATCCTGAACGTAGAAGAAGACAGAGACAAAACCTACG 178
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 116 GCGAATCGCCACCGGAGAATCAGGTCCTGAACGTAGAAGAAGACAGAGACAAAACCTACG 175
Query 179 ATTCAGTTCCGCCATTCTCATGGGCAAAGCTATGGAAATTCACCGGACCTGGATTTCTCA 238
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATTCGGTCCCGCCATTCTCATGGGCAAAGCTATGGAAATTCACCGGACCTGGATTTCTCA 235
Query 239 TGAGCATCGCGTTTC-TAGATCCAGGAAATATCGAAGGAGATTTACAAGCCGGAGCTGTG 297
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 236 TGAGCATCGCG-TTCTTAGATCCAGGAAACATCGAAGGAGATTTACAAGCCGGAGCTGTG 294
Query 298 GCTGGTTACTCTCTCCTATGGCTTCTTCTATGGGCGACGCTAATGGGACTTCTGATGCAG 357
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GCTGGGTACTCTCTCCTATGGCTTCTTCTATGGGCGACGCTAATGGGACTTCTGATGCAG 354
Query 358 CTTCTCTCTGCTCGTATCGGTGTCGCCACGGGTCGACATTTAGCGGAGATTTGTC-GAAG 416
|| ||||| ||||| ||||||||||| |||||||| ||| ||||||||||||| | |||
Sbjct 355 CTCCTCTCAGCTCGGATCGGTGTCGCGACGGGTCGGCATCTAGCGGAGATTTGCCGGAA- 413
Query 417 TGAGTATCCTTCGTGGGCGCGAATCTTGCTTTGGTTCATGGCGGAGGTTGCTTTGATCGG 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGAGTATCCATCGTGGGCGCGAATCTTGCTTTGGTTCATGGCGGAGGTTGCTTTGATCGG 473
Query 477 AGCTGATATTCAAGAAGTCATCGGAAGCGCGATCGCTCTTCAGATTTTGACTCGAGGGTT 536
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 474 AGCTGATATTCAAGAAGTCATCGGAAGCGCAATTGCTCTTCAGATTTTGACCCGAGGGTT 533
Query 537 TTTACCTATTTGGGTTGGTGTTATCATCACATCATTTGATTGCTTCTTGATTTCGTATTT 596
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 534 TTTACCGATTTGGGTTGGTGTTATCATCACATCGTTTGATTGCTTTTTGATTTCGTATCT 593
Query 597 GGAGAAATGTGGAATGAGGAAATTAGAAGGTCTTTTCGCGGTTTTGATTGCGACAATGGC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GGAGAAATGTGGAATGAGGAAATTAGAAGGTCTTTTCGCGGTTTTGATTGCGACAATGGC 653
Query 657 GCTTTCGTTCGCTTGGATGTTTAATGAAACTAAGCCAAGTGTTGAAGAACTATTCATAGG 716
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GCTTTCGTTTGCTTGGATGTTTAATGAAACTAAGCCAAGTGTTGAAGAACTATTCATAGG 713
Query 717 TATTATTATTCCGAAACTCGGATCAAAGACGATTAGAGAAGCTGTTGGAGTTGTGGGATG 776
|||| || ||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 714 TATTCTTGTTCCGAAGCTTGGATCAAAGACGATAAGAGAAGCTGTTGGAGTTGTGGGATG 773
Query 777 TGTAATAACGCCTCACAATGTGTTCTTGCATTCAGCTTTAGTGCAGTCTAGGAAGACGGA 836
||| || || || |||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 774 TGTGATTACTCCACACAATGTGTTCTTGCATTCGGCATTAGTGCAGTCGAGGAAGACGGA 833
Query 837 TCCAAAGGAGATAAACAGAGTTCAAGAAGCTCTTAACTACTATACAATCGAATCGTCAGC 896
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 834 TCCAAAGGAGATAAACAGAGTTCAGGAAGCTCTTAACTACTATACAATCGAATCATCAGC 893
Query 897 CGCGCTTTTTGTTTCGTTCATGATCAATTTGTTTGTAACTGCGGTTTTCGCGAAAGGGTT 956
|||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct 894 CGCGCTTTTTGTTTCGTTCATGATCAATCTGTTTGTTACAGCGGTTTTCGCTAAAGGGTT 953
Query 957 TTATGGAACCAAACAAGCTGATAGTATAGGACTGGTTAACGCGGGATATTACCTACAAGA 1016
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 954 TTATGGAACCAAACAAGCTGATAGTATAGGACTGGTTAACGCGGGGCATTACCTACAGGA 1013
Query 1017 GAAATATGGCGGTGGTGTTTTCCCGATACTATACATTTGGGGGATTGGTTTATTAGCTGC 1076
||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1014 GAAATATGGCGGTGGGGTTTTCCCGATACTTTACATTTGGGGAATCGGTTTATTAGCTGC 1073
Query 1077 TGGACAAAGCAGTACTATAACCGGGACTTATGCTGGACAGTTTATAATGGAAGGGTTCTT 1136
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1074 TGGACAAAGCAGTACTATAACCGGGACTTACGCTGGACAGTTTATAATGGAAGGGTTCTT 1133
Query 1137 AGATCTTCAAATGGAACAATGGCTATCAGCTTTTATAACGAGAAGCTTTGCTATTGTACC 1196
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1134 AGATCTTCAGATGGAACAATGGCTATCAGCTTTTATAACAAGAAGCTTTGCGATTGTACC 1193
Query 1197 TACTATGTTTGTTGCTATTATGTTTAACACATCCGAGGGCTCGCTCGATGTTTTAAACGA 1256
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 TACTATGTTTGTTGCTATTATGTTTAACACATCCGAGGGCTCACTCGATGTTTTAAACGA 1253
Query 1257 ATGGCTTAACATTCTTCAGTCGATGCAGATTCCTTTCGCGGTTATTCCTCTTTTGACTAT 1316
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATGGCTTAACATTCTTCAATCGATGCAGATTCCTTTCGCGGTTATTCCTCTTTTGACTAT 1313
Query 1317 GGTTTCTAATGAACATATCATGGGTGTCTTCAAGATCGGACCTTCGCTTGAGAAGCTAGC 1376
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1314 GGTTTCTAATGAACATATCATGGGTGTCTTCAAAATCGGACCTTCGCTCGAGAAGCTAGC 1373
Query 1377 TTGGACTGTGGCGGTGTTTGTGATGATGATAAATGGGTATCTTCTTCTAGATTTCTTCAT 1436
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1374 GTGGACTGTGGCGGTGTTTGTGATGATGATAAATGGGTACCTTCTTCTTGATTTCTTCAT 1433
Query 1437 GGCTGAAGTGGAAGGGTTTCTTGTTGGGTTTCTGGTTTTTGGTGGAGTAGTTGGATACAT 1496
|||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 1434 GGCTGAAGTGGAAGGGTTCCTTGTTGGGTTTCTGGTTTTTGCTGGAATAGTTGGATACAT 1493
Query 1497 CAGTTTCATCATCTATCTTGTTTCTTATAGAAGCTCACAATCTTCTTCCTGGTCGAGTTT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CAGTTTCATCATCTATCTTGTTTCTTATAGAAGCTCACAATCTTCTTCCTGGTCGAGTTT 1553
Query 1557 AGAAATGTCAGAGAGAGTTGTTTCCACAGAGACGTAG 1593
|||||||||| ||||||||||||||||||||||||||
Sbjct 1554 AGAAATGTCACAGAGAGTTGTTTCCACAGAGACGTAG 1590
> Ahg496866 jgi|Araly1|496866|fgenesh2_kg.8__2682__AT5G67330.1
Length=1793
Score = 483 bits (261), Expect = 2e-135
Identities = 892/1188 (75%), Gaps = 78/1188 (7%)
Strand=Plus/Plus
Query 192 ATTCTCATGGGCA-AAGCTATGGAAATTCACCGGACCTGGATTTCTCATGAGCATCGCGT 250
|||||||| || | ||||| ||| ||||||||||||||| ||||| ||||| ||||| |
Sbjct 200 ATTCTCAT-GGAAGAAGCTTTGGCTATTCACCGGACCTGGGTTTCTGATGAGTATCGC-T 257
Query 251 TTC-TAGATCCAGGAAATATCGAAGGAGAT-TTACAAGCCGGAGCTGTGGCTGGTTACTC 308
||| | |||||||| ||| |||| || ||| || ||||| ||||| | ||||| |||||
Sbjct 258 TTCATCGATCCAGGTAATCTCGAGGGCGATCTT-CAAGCTGGAGCCATCGCTGGCTACTC 316
Query 309 TCTCCTATGGCTTCTT-CTATGGGCGAC-GCTAATGGGACTTCTGATGCAGCTTCTCTCT 366
| | | |||| |||| | ||||| || || || || ||| |||| || |||||||||
Sbjct 317 TTTGATTTGGC-TCTTGATGTGGGCTACTGC-GATTGGCCTTTTGATCCAACTTCTCTCT 374
Query 367 GCTCGTATCGGTGTCGCCACGGGTCGACATTTAGCGGAGATT-TGTC--GAAGTGAGTAT 423
|||||| |||||||||| || ||||| ||| | |||||| || |||| ||| ||||||
Sbjct 375 GCTCGTCTCGGTGTCGCGACTGGTCGGCATCTGGCGGAG-TTGTGTCGTGAA--GAGTAT 431
Query 424 CCTTCGTGGGCGCGAATCTTGCTTTGG-TTCATGGCGGAGGTTGCTTTGATCGGAGCTGA 482
|| | ||||| | || |||||||| || ||||||||| |||||||||||||||||||
Sbjct 432 CCGACTTGGGCAAGGATGGTGCTTTGGATT-ATGGCGGAGATTGCTTTGATCGGAGCTGA 490
Query 483 TATTCAAGAAGTCATCGGAAGCGCGATCGCTCTTCA-GATTTTGACTCGAGGGTTT--TT 539
|||||||||||| || || || || || ||| | || ||| ||| || | || || ||
Sbjct 491 TATTCAAGAAGTTATTGGTAGTGCTATAGCTAT-CAAGATCTTGTCTA-ATGGATTGGTT 548
Query 540 ACCTATTTGGGTTGGTGTTATCATCACAT-CAT-TTGATTGCTTCTTGATTTCGTATTT- 596
||| |||||| ||||||| | ||||| | | | ||||||| ||| | |||| |||||
Sbjct 549 -CCTCTTTGGGCTGGTGTTGTTATCAC-TGC-TCTTGATTGTTTCATC-TTTC-TATTTT 603
Query 597 -GGAGAAATGTGGAATGAGGAAATTAGAAGGTCT-TTTCGCGGTTTTGATTGCGACAATG 654
|||||| | |||||| |||||| |||||| | | ||| || |||||||||| ||||||
Sbjct 604 TGGAGAATTATGGAATAAGGAAACTAGAAGCTGTGTTT-GCTATTTTGATTGCAACAATG 662
Query 655 GCGCTTTCGTTCGCTTGGATGTTTAATGAAACTAAGCCAAGTGTTGAA--GAACTA-TTC 711
|| ||| | || |||||||||||| | | ||||| || |||| ||| ||||| ||
Sbjct 663 GCTCTTGCATTTGCTTGGATGTTTGGTCAGACTAAACCCAGTG--GAACCGAACTCCTTG 720
Query 712 ATAGGTATTATTATTCCGAAA-CTCGGATCAAAGACGATTAGAGAAGCTGTTGGAGTTGT 770
| || | ||| ||| || ||| | || | ||| || | | |||||||||| |||||
Sbjct 721 TT-GG-AGCATTGGTCCCTAAGCTCAGTTCGAGGACTATCAAACAAGCTGTTGGTGTTGT 778
Query 771 GGGATGTGTAATAACGCCTCACAATGTGTTCTTGCATTCAGCT-TTAGTGCAGTCTAG-G 828
||||||| | || | ||||||||||||||||||||||||||| || ||||| || || |
Sbjct 779 GGGATGTATTATCATGCCTCACAATGTGTTCTTGCATTCAGCACTT-GTGCAATCCAGAG 837
Query 829 AAGACGGATCC-AAAG-GAGATAAACAGAGTTCAA-GAAGCTCTTAACTACTA-TACAAT 884
||| || |||| ||| ||||| | | || ||| |||||||| || ||||| | || |
Sbjct 838 AAGTCG-ATCCTAAAAAGAGATTC-CGG-GT-CAAAGAAGCTCTCAAGTACTACTCCATT 893
Query 885 CGAATCGT-CAGCCGCGCTTTTTGTTTCGTTCATGATCAATTTGTTTGTAACTGCGGTTT 943
||||| | | | || ||| ||||| ||||| ||||| | ||||| || ||||||
Sbjct 894 -GAATC-TACTGGTGCTCTTGCGGTTTCCTTCATTATCAACGTCTTTGTGACCACGGTTT 951
Query 944 TCGCGAAAGG-GTTTTATGGAACCAAACA-AGCTGATAGTATAGGACTGGTTAACGCGGG 1001
| || || | |||||| ||||| | | | ||| |||| || || || | || || ||
Sbjct 952 TTGCCAA-GTCGTTTTACGGAAC-AGAGATAGCGGATACCATCGGTCTTGCAAATGCTGG 1009
Query 1002 ATATTACCTACAAGAGAAATATGGCGGTGGTGTTTT-CCCGATACTATACATTTGGGGGA 1060
| | ||| |||| || ||||| || || || ||||| ||||||||| || || |||| ||
Sbjct 1010 ACAGTACTTACAGGACAAATACGGTGGCGG-GTTTTTCCCGATACTGTATATATGGGCGA 1068
Query 1061 TTGGTTTATTAGCTGCTGGACAAAGCAGTACTATAACCGGGACTTATGCTGGACAGTTTA 1120
|||| | ||||||||||| || || ||||| || || || ||||| |||||||||||||
Sbjct 1069 TTGGAGTCTTAGCTGCTGGTCAGAGTAGTACCATCACAGGTACTTACGCTGGACAGTTTA 1128
Query 1121 TAATGGAAGGGTTCTTAGA-TCTTCAA-ATGGAACAA-TGGCT-ATCAGCTTTTATAACG 1176
|||||| ||||||||| || ||| ||| ||| || || ||| | | ||| || || ||
Sbjct 1129 TAATGGGAGGGTTCTT-GAATCT-CAAGATG-AAGAAATGGGTTAG-AGCCTTAATCACA 1184
Query 1177 AGAAGCTTTGCTATTGTACCTACTATGTTTGTTGCTATTATGTTTAACACATCCGAGGGC 1236
||||||| || || | || || ||| ||||||| || | ||| | |||| || |
Sbjct 1185 AGAAGCTGCGCAATCATCCCAACAATGATTGTTGCGCTTTTCTTTGATTCATCGGATT-C 1243
Query 1237 TC-GCTCGATGTTTTAAACGAATGGCTTAACATTCTTCAGTC-GATGCAGATTCCTTTCG 1294
| |||||| | | ||||||||||| || ||||||| || | | ||||| |||||||
Sbjct 1244 TATGCTCGACGAGCTCAACGAATGGCTAAATGTTCTTCAATCAGTT-CAGATCCCTTTCG 1302
Query 1295 CGGTTATTCCTCTT-T-TGACTATGGTTTCTAATGAACATATCATGGG 1340
| || || ||||| | || || |||| || ||||| || ||||||||
Sbjct 1303 CCGTCATCCCTCTGCTCTG-CT-TGGTCTCCAATGACCAAATCATGGG 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5